microbiome2function/requirements.txt at main · BonhamLab/microbiome2function · GitHub

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annotated-types==0.7.0
anyio==4.10.0
certifi==2025.8.3
charset-normalizer==3.4.2
crc32c==2.7.1
distro==1.9.0
docopt==0.6.2
donfig==0.8.1.post1
et_xmlfile==2.0.0
filelock==3.18.0
fsspec==2025.7.0
ftpretty==0.4.0
goatools==1.4.12
h11==0.16.0
hf-xet==1.1.7
httpcore==1.0.9
httpx==0.28.1
huggingface-hub==0.34.3
idna==3.10
Jinja2==3.1.6
jiter==0.10.0
joblib==1.5.1
markdown-it-py==3.0.0
MarkupSafe==3.0.2
mdurl==0.1.2
mpmath==1.3.0
networkx==3.5
numcodecs==0.16.1
numpy==2.3.2
openai==1.99.3
openpyxl==3.1.5
packaging==25.0
pandas==2.3.1
patsy==1.0.1
pyarrow==21.0.0
pydantic==2.11.7
pydantic_core==2.33.2
pydot==4.0.1
Pygments==2.19.2
pyparsing==3.2.3
python-dateutil==2.9.0.post0
pytz==2025.2
PyYAML==6.0.2
regex==2025.7.34
requests==2.32.4
rich==14.1.0
safetensors==0.6.1
scikit-learn==1.7.1
scipy==1.16.1
setuptools==80.9.0
six==1.17.0
sniffio==1.3.1
statsmodels==0.14.5
sympy==1.14.0
threadpoolctl==3.6.0
tokenizers==0.21.4
torch==2.8.0
tqdm==4.67.1
transformers==4.55.0
typing-inspection==0.4.1
typing_extensions==4.14.1
tzdata==2025.2
urllib3==2.5.0
xlsxwriter==3.2.5
zarr==3.1.1