From 3b33f478cde9916c29797578687f15efa1e22a42 Mon Sep 17 00:00:00 2001 From: Mahmudur Date: Wed, 6 Nov 2024 00:12:39 -0500 Subject: [PATCH 01/35] add bin files to ignore --- .gitignore | 3 +++ 1 file changed, 3 insertions(+) diff --git a/.gitignore b/.gitignore index c9474082..cb7ddcea 100644 --- a/.gitignore +++ b/.gitignore @@ -172,3 +172,6 @@ gtdb-rs214-reps.k31_0.9995_pretrained/ # added by mahmudhera src/cpp/main.o .gitignore +src/cpp/utils.o +src/yacht/run_yacht_train_core +.vscode/settings.json From f557d9c4740bd87b493a0331a18459857a6ca431 Mon Sep 17 00:00:00 2001 From: Mahmudur Date: Wed, 6 Nov 2024 00:13:12 -0500 Subject: [PATCH 02/35] add sketch reader to utils --- Makefile | 2 +- src/cpp/main.cpp | 27 +-------------------------- src/cpp/utils.cpp | 25 +++++++++++++++++++++++++ src/cpp/utils.h | 33 +++++++++++++++++++++++++++++++++ 4 files changed, 60 insertions(+), 27 deletions(-) create mode 100644 src/cpp/utils.cpp create mode 100644 src/cpp/utils.h diff --git a/Makefile b/Makefile index 8248777f..ca7d70d4 100644 --- a/Makefile +++ b/Makefile @@ -7,7 +7,7 @@ SRC_DIR = src/cpp BIN_DIR = src/yacht # Source files -SRC_FILES = $(SRC_DIR)/main.cpp +SRC_FILES = $(SRC_DIR)/main.cpp $(SRC_DIR)/utils.cpp # Object files OBJ_FILES = $(SRC_FILES:.cpp=.o) diff --git a/src/cpp/main.cpp b/src/cpp/main.cpp index 39fc606e..653e364f 100644 --- a/src/cpp/main.cpp +++ b/src/cpp/main.cpp @@ -6,6 +6,7 @@ #include "argparse.hpp" #include "json.hpp" +#include "utils.h" #include #include @@ -59,32 +60,6 @@ vector> similars; -vector read_min_hashes(const string& json_filename) { - - // Open the JSON file - ifstream inputFile(json_filename); - - // Check if the file is open - if (!inputFile.is_open()) { - cerr << "Could not open the file!" << endl; - return {}; - } - - // Parse the JSON data - json jsonData; - inputFile >> jsonData; - - // Access and print values - vector min_hashes = jsonData[0]["signatures"][0]["mins"]; - - // Close the file - inputFile.close(); - - return min_hashes; -} - - - void read_sketches_one_chunk(int start_index, int end_index) { for (int i = start_index; i < end_index; i++) { diff --git a/src/cpp/utils.cpp b/src/cpp/utils.cpp new file mode 100644 index 00000000..8ae1b3eb --- /dev/null +++ b/src/cpp/utils.cpp @@ -0,0 +1,25 @@ +#include "utils.h" + +std::vector read_min_hashes(const std::string& json_filename) { + + // Open the JSON file + std::ifstream inputFile(json_filename); + + // Check if the file is open + if (!inputFile.is_open()) { + std::cerr << "Could not open the file!" << std::endl; + return {}; + } + + // Parse the JSON data + json jsonData; + inputFile >> jsonData; + + // Access and print values + std::vector min_hashes = jsonData[0]["signatures"][0]["mins"]; + + // Close the file + inputFile.close(); + + return min_hashes; +} \ No newline at end of file diff --git a/src/cpp/utils.h b/src/cpp/utils.h new file mode 100644 index 00000000..ce6648a2 --- /dev/null +++ b/src/cpp/utils.h @@ -0,0 +1,33 @@ +#ifndef UTILS_H +#define UTILS_H + +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include + +#include "json.hpp" + +using json = nlohmann::json; + +typedef unsigned long long int hash_t; + +std::vector read_min_hashes(const std::string&); + + +#endif \ No newline at end of file From b8bcd9f8f244d591e4884b2e7ae04d250e5eaab0 Mon Sep 17 00:00:00 2001 From: Mahmudur Date: Wed, 6 Nov 2024 11:59:05 -0500 Subject: [PATCH 03/35] move computation of hash index to header --- src/cpp/main.cpp | 36 +----------------------------------- src/cpp/utils.cpp | 34 ++++++++++++++++++++++++++++++++++ src/cpp/utils.h | 2 ++ 3 files changed, 37 insertions(+), 35 deletions(-) diff --git a/src/cpp/main.cpp b/src/cpp/main.cpp index 653e364f..3f50d3b8 100644 --- a/src/cpp/main.cpp +++ b/src/cpp/main.cpp @@ -187,40 +187,6 @@ void show_empty_sketches() { } -void compute_index_from_sketches() { - // create the index using all the hashes - for (uint i = 0; i < sketches.size(); i++) { - for (uint j = 0; j < sketches[i].size(); j++) { - hash_t hash = sketches[i][j]; - if (hash_index.find(hash) == hash_index.end()) { - hash_index[hash] = vector(); - } - hash_index[hash].push_back(i); - } - } - - size_t num_hashes = hash_index.size(); - - // remove the hashes that only appear in one sketch - vector hashes_to_remove; - for (auto it = hash_index.begin(); it != hash_index.end(); it++) { - if (it->second.size() == 1) { - hashes_to_remove.push_back(it->first); - } - } - for (uint i = 0; i < hashes_to_remove.size(); i++) { - hash_index.erase(hashes_to_remove[i]); - } - - size_t num_hashes_after_removal = hash_index.size(); - - cout << "Total number of distinct hashes: " << num_hashes << endl; - cout << "Total number of distinct hashes that appear in only one sketch: " << num_hashes - num_hashes_after_removal << endl; - cout << "Size of the index: " << num_hashes_after_removal << endl; - -} - - void compute_intersection_matrix_by_sketches(int sketch_start_index, int sketch_end_index, int thread_id, string out_dir, int pass_id, int negative_offset) { // process the sketches in the range [sketch_start_index, sketch_end_index) @@ -440,7 +406,7 @@ int main(int argc, char *argv[]) { // **************************************************************** auto index_build_start = chrono::high_resolution_clock::now(); cout << "Building index from sketches..." << endl; - compute_index_from_sketches(); + compute_index_from_sketches(sketches, hash_index); auto index_build_end = chrono::high_resolution_clock::now(); auto index_build_duration = chrono::duration_cast(index_build_end - index_build_start); cout << "Time taken to build index: " << index_build_duration.count() << " milliseconds" << endl; diff --git a/src/cpp/utils.cpp b/src/cpp/utils.cpp index 8ae1b3eb..4cbc6bf8 100644 --- a/src/cpp/utils.cpp +++ b/src/cpp/utils.cpp @@ -22,4 +22,38 @@ std::vector read_min_hashes(const std::string& json_filename) { inputFile.close(); return min_hashes; +} + + +void compute_index_from_sketches(std::vector>& sketches, std::unordered_map>& hash_index) { + // create the index using all the hashes + for (uint i = 0; i < sketches.size(); i++) { + for (uint j = 0; j < sketches[i].size(); j++) { + hash_t hash = sketches[i][j]; + if (hash_index.find(hash) == hash_index.end()) { + hash_index[hash] = std::vector(); + } + hash_index[hash].push_back(i); + } + } + + size_t num_hashes = hash_index.size(); + + // remove the hashes that only appear in one sketch + std::vector hashes_to_remove; + for (auto it = hash_index.begin(); it != hash_index.end(); it++) { + if (it->second.size() == 1) { + hashes_to_remove.push_back(it->first); + } + } + for (uint i = 0; i < hashes_to_remove.size(); i++) { + hash_index.erase(hashes_to_remove[i]); + } + + size_t num_hashes_after_removal = hash_index.size(); + + std::cout << "Total number of distinct hashes: " << num_hashes << std::endl; + std::cout << "Total number of distinct hashes that appear in only one sketch: " << num_hashes - num_hashes_after_removal << std::endl; + std::cout << "Size of the index: " << num_hashes_after_removal << std::endl; + } \ No newline at end of file diff --git a/src/cpp/utils.h b/src/cpp/utils.h index ce6648a2..21a0f3f8 100644 --- a/src/cpp/utils.h +++ b/src/cpp/utils.h @@ -29,5 +29,7 @@ typedef unsigned long long int hash_t; std::vector read_min_hashes(const std::string&); +void compute_index_from_sketches(std::vector>&, std::unordered_map>&); + #endif \ No newline at end of file From 08d8014bef15e22a57084a9864e7b640f3aae6f2 Mon Sep 17 00:00:00 2001 From: Mahmudur Date: Wed, 6 Nov 2024 12:12:34 -0500 Subject: [PATCH 04/35] move sketch reading to header --- src/cpp/main.cpp | 58 ++-------------------------------------- src/cpp/utils.cpp | 67 +++++++++++++++++++++++++++++++++++++++++++++++ src/cpp/utils.h | 6 +++++ 3 files changed, 75 insertions(+), 56 deletions(-) diff --git a/src/cpp/main.cpp b/src/cpp/main.cpp index 3f50d3b8..a54b1c0c 100644 --- a/src/cpp/main.cpp +++ b/src/cpp/main.cpp @@ -60,60 +60,6 @@ vector> similars; - -void read_sketches_one_chunk(int start_index, int end_index) { - for (int i = start_index; i < end_index; i++) { - auto min_hashes_genome_name = read_min_hashes(sketch_names[i]); - sketches[i] = min_hashes_genome_name; - if (sketches[i].size() == 0) { - mutex_count_empty_sketch.lock(); - count_empty_sketch++; - empty_sketch_ids.push_back(i); - mutex_count_empty_sketch.unlock(); - } - genome_id_size_pairs[i] = {i, sketches[i].size()}; - } -} - - - -void read_sketches() { - for (uint i = 0; i < num_sketches; i++) { - sketches.push_back( vector() ); - genome_id_size_pairs.push_back({-1, 0}); - } - - int num_threads = arguments.number_of_threads; - - int chunk_size = num_sketches / num_threads; - vector threads; - for (int i = 0; i < num_threads; i++) { - int start_index = i * chunk_size; - int end_index = (i == num_threads - 1) ? num_sketches : (i + 1) * chunk_size; - threads.push_back(thread(read_sketches_one_chunk, start_index, end_index)); - } - for (int i = 0; i < num_threads; i++) { - threads[i].join(); - } - -} - - -void get_sketch_names(const std::string& filelist) { - // the filelist is a file, where each line is a path to a sketch file - std::ifstream file(filelist); - if (!file.is_open()) { - std::cerr << "Could not open the filelist: " << filelist << std::endl; - return; - } - std::string line; - while (std::getline(file, line)) { - sketch_names.push_back(line); - } - num_sketches = sketch_names.size(); -} - - void parse_arguments(int argc, char *argv[]) { argparse::ArgumentParser parser("yacht train using indexing of sketches"); @@ -384,9 +330,9 @@ int main(int argc, char *argv[]) { // ********************************************************* auto read_start = chrono::high_resolution_clock::now(); cout << "Reading all sketches in filelist using all " << arguments.number_of_threads << " threads..." << endl; - get_sketch_names(arguments.file_list); + get_sketch_names(arguments.file_list, sketch_names, num_sketches); cout << "Total number of sketches to read: " << num_sketches << endl; - read_sketches(); + read_sketches(num_sketches, sketches, genome_id_size_pairs, arguments.number_of_threads, sketch_names, count_empty_sketch, empty_sketch_ids, mutex_count_empty_sketch); auto read_end = chrono::high_resolution_clock::now(); cout << "All sketches read" << endl; diff --git a/src/cpp/utils.cpp b/src/cpp/utils.cpp index 4cbc6bf8..7eec213d 100644 --- a/src/cpp/utils.cpp +++ b/src/cpp/utils.cpp @@ -56,4 +56,71 @@ void compute_index_from_sketches(std::vector>& sketches, std std::cout << "Total number of distinct hashes that appear in only one sketch: " << num_hashes - num_hashes_after_removal << std::endl; std::cout << "Size of the index: " << num_hashes_after_removal << std::endl; +} + + + +void get_sketch_names(const std::string& filelist, std::vector& sketch_names, uint& num_sketches) { + // the filelist is a file, where each line is a path to a sketch file + std::ifstream file(filelist); + if (!file.is_open()) { + std::cerr << "Could not open the filelist: " << filelist << std::endl; + return; + } + std::string line; + while (std::getline(file, line)) { + sketch_names.push_back(line); + } + num_sketches = sketch_names.size(); +} + + + +void read_sketches_one_chunk(int start_index, int end_index, + std::vector& sketch_names, + std::vector>& sketches, + std::vector>& genome_id_size_pairs, + std::mutex& mutex_count_empty_sketch, + int& count_empty_sketch, + std::vector& empty_sketch_ids) { + + for (int i = start_index; i < end_index; i++) { + auto min_hashes_genome_name = read_min_hashes(sketch_names[i]); + sketches[i] = min_hashes_genome_name; + if (sketches[i].size() == 0) { + mutex_count_empty_sketch.lock(); + count_empty_sketch++; + empty_sketch_ids.push_back(i); + mutex_count_empty_sketch.unlock(); + } + genome_id_size_pairs[i] = {i, sketches[i].size()}; + } +} + + + +void read_sketches(const uint num_sketches, std::vector>& sketches, + std::vector>& genome_id_size_pairs, + const uint num_threads, std::vector& sketch_names, + int& count_empty_sketch, std::vector& empty_sketch_ids, std::mutex& mutex_count_empty_sketch) { + + for (uint i = 0; i < num_sketches; i++) { + sketches.push_back( std::vector() ); + genome_id_size_pairs.push_back({-1, 0}); + } + + int chunk_size = num_sketches / num_threads; + std::vector threads; + for (int i = 0; i < num_threads; i++) { + int start_index = i * chunk_size; + int end_index = (i == num_threads - 1) ? num_sketches : (i + 1) * chunk_size; + threads.push_back(std::thread(read_sketches_one_chunk, start_index, end_index, + std::ref(sketch_names), std::ref(sketches), + std::ref(genome_id_size_pairs), std::ref(mutex_count_empty_sketch), + std::ref(count_empty_sketch), std::ref(empty_sketch_ids))); + } + for (int i = 0; i < num_threads; i++) { + threads[i].join(); + } + } \ No newline at end of file diff --git a/src/cpp/utils.h b/src/cpp/utils.h index 21a0f3f8..69cf440e 100644 --- a/src/cpp/utils.h +++ b/src/cpp/utils.h @@ -31,5 +31,11 @@ std::vector read_min_hashes(const std::string&); void compute_index_from_sketches(std::vector>&, std::unordered_map>&); +void get_sketch_names(const std::string&, std::vector&, uint&); + +void read_sketches(const uint, std::vector>&, + std::vector>&, + const uint, std::vector&, + int&, std::vector&, std::mutex&); #endif \ No newline at end of file From 5532e3c83bce4eeab5501e62383a373c427d24e7 Mon Sep 17 00:00:00 2001 From: Mahmudur Date: Wed, 6 Nov 2024 18:10:58 -0500 Subject: [PATCH 05/35] move show mpty sketches to header --- src/cpp/main.cpp | 15 +-------------- src/cpp/utils.cpp | 15 +++++++++++++++ src/cpp/utils.h | 2 ++ 3 files changed, 18 insertions(+), 14 deletions(-) diff --git a/src/cpp/main.cpp b/src/cpp/main.cpp index a54b1c0c..d39ee524 100644 --- a/src/cpp/main.cpp +++ b/src/cpp/main.cpp @@ -120,19 +120,6 @@ void show_arguments() { } -void show_empty_sketches() { - cout << "Number of empty sketches: " << count_empty_sketch << endl; - if (count_empty_sketch == 0) { - return; - } - cout << "Empty sketch ids: "; - for (int i : empty_sketch_ids) { - cout << i << " "; - } - cout << endl; -} - - void compute_intersection_matrix_by_sketches(int sketch_start_index, int sketch_end_index, int thread_id, string out_dir, int pass_id, int negative_offset) { // process the sketches in the range [sketch_start_index, sketch_end_index) @@ -338,7 +325,7 @@ int main(int argc, char *argv[]) { cout << "All sketches read" << endl; // show empty sketches - show_empty_sketches(); + show_empty_sketches(num_sketches, empty_sketch_ids); // show time taken to read all sketches auto read_duration = chrono::duration_cast(read_end - read_start); diff --git a/src/cpp/utils.cpp b/src/cpp/utils.cpp index 7eec213d..28ca4089 100644 --- a/src/cpp/utils.cpp +++ b/src/cpp/utils.cpp @@ -123,4 +123,19 @@ void read_sketches(const uint num_sketches, std::vector>& sk threads[i].join(); } +} + + + + +void show_empty_sketches(const uint count_empty_sketch, const std::vector& empty_sketch_ids) { + std::cout << "Number of empty sketches: " << count_empty_sketch << std::endl; + if (count_empty_sketch == 0) { + return; + } + std::cout << "Empty sketch ids: "; + for (int i : empty_sketch_ids) { + std::cout << i << " "; + } + std::cout << std::endl; } \ No newline at end of file diff --git a/src/cpp/utils.h b/src/cpp/utils.h index 69cf440e..dfcc39e0 100644 --- a/src/cpp/utils.h +++ b/src/cpp/utils.h @@ -38,4 +38,6 @@ void read_sketches(const uint, std::vector>&, const uint, std::vector&, int&, std::vector&, std::mutex&); +void show_empty_sketches(const uint, const std::vector&); + #endif \ No newline at end of file From 567eec1102cd48170b18a3a635e1f3daa6993b35 Mon Sep 17 00:00:00 2001 From: Mahmudur Date: Wed, 6 Nov 2024 18:43:17 -0500 Subject: [PATCH 06/35] move computation of int matrix to utils --- src/cpp/main.cpp | 124 +---------------------------------------- src/cpp/utils.cpp | 138 ++++++++++++++++++++++++++++++++++++++++++++++ src/cpp/utils.h | 7 +++ 3 files changed, 148 insertions(+), 121 deletions(-) diff --git a/src/cpp/main.cpp b/src/cpp/main.cpp index d39ee524..85edc6c6 100644 --- a/src/cpp/main.cpp +++ b/src/cpp/main.cpp @@ -120,126 +120,6 @@ void show_arguments() { } -void compute_intersection_matrix_by_sketches(int sketch_start_index, int sketch_end_index, int thread_id, string out_dir, int pass_id, int negative_offset) { - - // process the sketches in the range [sketch_start_index, sketch_end_index) - for (uint i = sketch_start_index; i < sketch_end_index; i++) { - for (int j = 0; j < sketches[i].size(); j++) { - hash_t hash = sketches[i][j]; - if (hash_index.find(hash) != hash_index.end()) { - vector sketch_indices = hash_index[hash]; - for (uint k = 0; k < sketch_indices.size(); k++) { - intersectionMatrix[i-negative_offset][sketch_indices[k]]++; - } - } - } - } - - // write the similarity values to file. filename: out_dir/passid_threadid.txt, where id is thread id in 3 digits - string id_in_three_digits_str = to_string(thread_id); - while (id_in_three_digits_str.size() < 3) { - id_in_three_digits_str = "0" + id_in_three_digits_str; - } - string pass_id_str = to_string(pass_id); - string filename = out_dir + "/" + pass_id_str + "_" + id_in_three_digits_str + ".txt"; - ofstream outfile(filename); - - // only write the values if larger than the threshold - for (int i = sketch_start_index; i < sketch_end_index; i++) { - for (uint j = 0; j < num_sketches; j++) { - // skip obvious cases - if ((uint)i == (uint)j) { - continue; - } - - // if nothing in the intersection, then skip - if (intersectionMatrix[i-negative_offset][j] == 0) { - continue; - } - - // if either of the sketches is empty, then skip - if (sketches[i].size() == 0 || sketches[j].size() == 0) { - continue; - } - - // if the divisor in the jaccard calculation is 0, then skip - if (sketches[i].size() + sketches[j].size() - intersectionMatrix[i-negative_offset][j] == 0) { - continue; - } - - double jaccard = 1.0 * intersectionMatrix[i-negative_offset][j] / ( sketches[i].size() + sketches[j].size() - intersectionMatrix[i-negative_offset][j] ); - double containment_i_in_j = 1.0 * intersectionMatrix[i-negative_offset][j] / sketches[i].size(); - double containment_j_in_i = 1.0 * intersectionMatrix[i-negative_offset][j] / sketches[j].size(); - - // containment_i_in_j is the containment of query in target, i is the query - if (containment_i_in_j < arguments.containment_threshold) { - continue; - } - - outfile << i << "," << j << "," << jaccard << "," << containment_i_in_j << "," << containment_j_in_i << endl; - similars[i].push_back(j); - } - } - - outfile.close(); - -} - - - -void compute_intersection_matrix() { - // allocate memory for the intersection matrix - int num_sketches_each_pass = ceil(1.0 * num_sketches / arguments.num_of_passes); - intersectionMatrix = new int*[num_sketches_each_pass + 1]; - for (int i = 0; i < num_sketches_each_pass + 1; i++) { - intersectionMatrix[i] = new int[num_sketches]; - } - - // allocate memory for the similars - for (int i = 0; i < num_sketches; i++) { - similars.push_back(vector()); - } - - for (int pass_id = 0; pass_id < arguments.num_of_passes; pass_id++) { - // set zeros in the intersection matrix - for (int i = 0; i < num_sketches_each_pass+1; i++) { - for (uint j = 0; j < num_sketches; j++) { - intersectionMatrix[i][j] = 0; - } - } - - // prepare the indices which will be processed in this pass - int sketch_idx_start_this_pass = pass_id * num_sketches_each_pass; - int sketch_idx_end_this_pass = (pass_id == arguments.num_of_passes - 1) ? num_sketches : (pass_id + 1) * num_sketches_each_pass; - int negative_offset = pass_id * num_sketches_each_pass; - int num_sketches_this_pass = sketch_idx_end_this_pass - sketch_idx_start_this_pass; - - // create threads - vector threads; - int chunk_size = num_sketches_this_pass / arguments.number_of_threads; - for (int i = 0; i < arguments.number_of_threads; i++) { - int start_index_this_thread = sketch_idx_start_this_pass + i * chunk_size; - int end_index_this_thread = (i == arguments.number_of_threads - 1) ? sketch_idx_end_this_pass : sketch_idx_start_this_pass + (i + 1) * chunk_size; - threads.push_back( thread(compute_intersection_matrix_by_sketches, start_index_this_thread, end_index_this_thread, i, arguments.working_directory, pass_id, negative_offset) ); - } - - // join threads - for (int i = 0; i < arguments.number_of_threads; i++) { - threads[i].join(); - } - - // show progress - std::cout << "Pass " << pass_id+1 << "/" << arguments.num_of_passes << " done." << std::endl; - } - - // free the memory allocated for the intersection matrix - for (int i = 0; i < num_sketches_each_pass + 1; i++) { - delete[] intersectionMatrix[i]; - } - delete[] intersectionMatrix; -} - - void do_yacht_train() { @@ -351,7 +231,9 @@ int main(int argc, char *argv[]) { // ********************************************************************** auto mat_computation_start = chrono::high_resolution_clock::now(); cout << "Computing intersection matrix..." << endl; - compute_intersection_matrix(); + compute_intersection_matrix(num_sketches, arguments.num_of_passes, arguments.number_of_threads, + sketches, hash_index, arguments.working_directory, + similars, arguments.containment_threshold); auto mat_computation_end = chrono::high_resolution_clock::now(); auto mat_computation_duration = chrono::duration_cast(mat_computation_end - mat_computation_start); cout << "Time taken to compute intersection matrix: " << mat_computation_duration.count() << " milliseconds" << endl; diff --git a/src/cpp/utils.cpp b/src/cpp/utils.cpp index 28ca4089..5be7b929 100644 --- a/src/cpp/utils.cpp +++ b/src/cpp/utils.cpp @@ -138,4 +138,142 @@ void show_empty_sketches(const uint count_empty_sketch, const std::vector& std::cout << i << " "; } std::cout << std::endl; +} + + + + + +void compute_intersection_matrix_by_sketches(int sketch_start_index, int sketch_end_index, + int thread_id, std::string out_dir, + int pass_id, int negative_offset, + const std::vector>& sketches, + const std::unordered_map>& hash_index, + int** intersectionMatrix, const int num_sketches, + double containment_threshold, + std::vector>& similars) { + + // process the sketches in the range [sketch_start_index, sketch_end_index) + for (uint i = sketch_start_index; i < sketch_end_index; i++) { + for (int j = 0; j < sketches[i].size(); j++) { + hash_t hash = sketches[i][j]; + if (hash_index.find(hash) != hash_index.end()) { + std::vector sketch_indices = hash_index.at(hash); + for (uint k = 0; k < sketch_indices.size(); k++) { + intersectionMatrix[i-negative_offset][sketch_indices[k]]++; + } + } + } + } + + // write the similarity values to file. filename: out_dir/passid_threadid.txt, where id is thread id in 3 digits + std::string id_in_three_digits_str = std::to_string(thread_id); + while (id_in_three_digits_str.size() < 3) { + id_in_three_digits_str = "0" + id_in_three_digits_str; + } + std::string pass_id_str = std::to_string(pass_id); + std::string filename = out_dir + "/" + pass_id_str + "_" + id_in_three_digits_str + ".txt"; + std::ofstream outfile(filename); + + // only write the values if larger than the threshold + for (int i = sketch_start_index; i < sketch_end_index; i++) { + for (uint j = 0; j < num_sketches; j++) { + // skip obvious cases + if ((uint)i == (uint)j) { + continue; + } + + // if nothing in the intersection, then skip + if (intersectionMatrix[i-negative_offset][j] == 0) { + continue; + } + + // if either of the sketches is empty, then skip + if (sketches[i].size() == 0 || sketches[j].size() == 0) { + continue; + } + + // if the divisor in the jaccard calculation is 0, then skip + if (sketches[i].size() + sketches[j].size() - intersectionMatrix[i-negative_offset][j] == 0) { + continue; + } + + double jaccard = 1.0 * intersectionMatrix[i-negative_offset][j] / ( sketches[i].size() + sketches[j].size() - intersectionMatrix[i-negative_offset][j] ); + double containment_i_in_j = 1.0 * intersectionMatrix[i-negative_offset][j] / sketches[i].size(); + double containment_j_in_i = 1.0 * intersectionMatrix[i-negative_offset][j] / sketches[j].size(); + + // containment_i_in_j is the containment of query in target, i is the query + if (containment_i_in_j < containment_threshold) { + continue; + } + + outfile << i << "," << j << "," << jaccard << "," << containment_i_in_j << "," << containment_j_in_i << std::endl; + similars[i].push_back(j); + } + } + + outfile.close(); + +} + + + +void compute_intersection_matrix(const int num_sketches, const int num_passes, const int num_threads, + const std::vector>& sketches, + const std::unordered_map>& hash_index, + const std::string& out_dir, std::vector>& similars, + double containment_threshold) { + // allocate memory for the intersection matrix + int num_sketches_each_pass = ceil(1.0 * num_sketches / num_passes); + int** intersectionMatrix = new int*[num_sketches_each_pass + 1]; + for (int i = 0; i < num_sketches_each_pass + 1; i++) { + intersectionMatrix[i] = new int[num_sketches]; + } + + // allocate memory for the similars + for (int i = 0; i < num_sketches; i++) { + similars.push_back(std::vector()); + } + + for (int pass_id = 0; pass_id < num_passes; pass_id++) { + // set zeros in the intersection matrix + for (int i = 0; i < num_sketches_each_pass+1; i++) { + for (uint j = 0; j < num_sketches; j++) { + intersectionMatrix[i][j] = 0; + } + } + + // prepare the indices which will be processed in this pass + int sketch_idx_start_this_pass = pass_id * num_sketches_each_pass; + int sketch_idx_end_this_pass = (pass_id == num_passes - 1) ? num_sketches : (pass_id + 1) * num_sketches_each_pass; + int negative_offset = pass_id * num_sketches_each_pass; + int num_sketches_this_pass = sketch_idx_end_this_pass - sketch_idx_start_this_pass; + + // create threads + std::vector threads; + int chunk_size = num_sketches_this_pass / num_threads; + for (int i = 0; i < num_threads; i++) { + int start_index_this_thread = sketch_idx_start_this_pass + i * chunk_size; + int end_index_this_thread = (i == num_threads - 1) ? sketch_idx_end_this_pass : sketch_idx_start_this_pass + (i + 1) * chunk_size; + threads.push_back(std::thread(compute_intersection_matrix_by_sketches, start_index_this_thread, + end_index_this_thread, i, out_dir, pass_id, negative_offset, + std::ref(sketches), std::ref(hash_index), + intersectionMatrix, num_sketches, containment_threshold, + std::ref(similars))); + } + + // join threads + for (int i = 0; i < num_threads; i++) { + threads[i].join(); + } + + // show progress + std::cout << "Pass " << pass_id+1 << "/" << num_passes << " done." << std::endl; + } + + // free the memory allocated for the intersection matrix + for (int i = 0; i < num_sketches_each_pass + 1; i++) { + delete[] intersectionMatrix[i]; + } + delete[] intersectionMatrix; } \ No newline at end of file diff --git a/src/cpp/utils.h b/src/cpp/utils.h index dfcc39e0..3f584670 100644 --- a/src/cpp/utils.h +++ b/src/cpp/utils.h @@ -40,4 +40,11 @@ void read_sketches(const uint, std::vector>&, void show_empty_sketches(const uint, const std::vector&); + +void compute_intersection_matrix(const int num_sketches, const int num_passes, const int num_threads, + const std::vector>& sketches, + const std::unordered_map>& hash_index, + const std::string& out_dir, std::vector>& similars, + double containment_threshold); + #endif \ No newline at end of file From 37a2cb42ce293fb31a3be022ec5d9727e97f6466 Mon Sep 17 00:00:00 2001 From: Mahmudur Date: Wed, 6 Nov 2024 19:13:41 -0500 Subject: [PATCH 07/35] change implementation to use two sets of sketches --- src/cpp/main.cpp | 12 ++++-- src/cpp/utils.cpp | 94 ++++++++++++++++++++++++----------------------- src/cpp/utils.h | 8 ++-- 3 files changed, 62 insertions(+), 52 deletions(-) diff --git a/src/cpp/main.cpp b/src/cpp/main.cpp index 85edc6c6..b5447b7f 100644 --- a/src/cpp/main.cpp +++ b/src/cpp/main.cpp @@ -144,6 +144,11 @@ void do_yacht_train() { // show my size for (int j = 0; j < similars[genome_id_this].size(); j++) { int genome_id_other = similars[genome_id_this][j]; + + if (genome_id_other == genome_id_this) { + continue; + } + if (genome_id_to_exclude[genome_id_other]) { continue; } @@ -231,9 +236,10 @@ int main(int argc, char *argv[]) { // ********************************************************************** auto mat_computation_start = chrono::high_resolution_clock::now(); cout << "Computing intersection matrix..." << endl; - compute_intersection_matrix(num_sketches, arguments.num_of_passes, arguments.number_of_threads, - sketches, hash_index, arguments.working_directory, - similars, arguments.containment_threshold); + compute_intersection_matrix(num_sketches, num_sketches, arguments.num_of_passes, + arguments.number_of_threads, sketches, sketches, + hash_index, arguments.working_directory, similars, + arguments.containment_threshold); auto mat_computation_end = chrono::high_resolution_clock::now(); auto mat_computation_duration = chrono::duration_cast(mat_computation_end - mat_computation_start); cout << "Time taken to compute intersection matrix: " << mat_computation_duration.count() << " milliseconds" << endl; diff --git a/src/cpp/utils.cpp b/src/cpp/utils.cpp index 5be7b929..5a4103ee 100644 --- a/src/cpp/utils.cpp +++ b/src/cpp/utils.cpp @@ -144,23 +144,25 @@ void show_empty_sketches(const uint count_empty_sketch, const std::vector& -void compute_intersection_matrix_by_sketches(int sketch_start_index, int sketch_end_index, +void compute_intersection_matrix_by_sketches(int query_sketch_start_index, int query_sketch_end_index, int thread_id, std::string out_dir, int pass_id, int negative_offset, - const std::vector>& sketches, - const std::unordered_map>& hash_index, - int** intersectionMatrix, const int num_sketches, + const std::vector>& sketches_query, + const std::vector>& sketches_ref, + const std::unordered_map>& hash_index_ref, + int** intersectionMatrix, + const int num_sketches_query, const int num_sketches_ref, double containment_threshold, std::vector>& similars) { // process the sketches in the range [sketch_start_index, sketch_end_index) - for (uint i = sketch_start_index; i < sketch_end_index; i++) { - for (int j = 0; j < sketches[i].size(); j++) { - hash_t hash = sketches[i][j]; - if (hash_index.find(hash) != hash_index.end()) { - std::vector sketch_indices = hash_index.at(hash); - for (uint k = 0; k < sketch_indices.size(); k++) { - intersectionMatrix[i-negative_offset][sketch_indices[k]]++; + for (uint i = query_sketch_start_index; i < query_sketch_end_index; i++) { + for (int j = 0; j < sketches_query[i].size(); j++) { + hash_t hash = sketches_query[i][j]; + if (hash_index_ref.find(hash) != hash_index_ref.end()) { + std::vector ref_sketch_indices = hash_index_ref.at(hash); + for (uint k = 0; k < ref_sketch_indices.size(); k++) { + intersectionMatrix[i-negative_offset][ref_sketch_indices[k]]++; } } } @@ -176,31 +178,26 @@ void compute_intersection_matrix_by_sketches(int sketch_start_index, int sketch_ std::ofstream outfile(filename); // only write the values if larger than the threshold - for (int i = sketch_start_index; i < sketch_end_index; i++) { - for (uint j = 0; j < num_sketches; j++) { - // skip obvious cases - if ((uint)i == (uint)j) { - continue; - } - + for (int i = query_sketch_start_index; i < query_sketch_end_index; i++) { + for (uint j = 0; j < num_sketches_ref; j++) { // if nothing in the intersection, then skip if (intersectionMatrix[i-negative_offset][j] == 0) { continue; } // if either of the sketches is empty, then skip - if (sketches[i].size() == 0 || sketches[j].size() == 0) { + if (sketches_query[i].size() == 0 || sketches_ref[j].size() == 0) { continue; } // if the divisor in the jaccard calculation is 0, then skip - if (sketches[i].size() + sketches[j].size() - intersectionMatrix[i-negative_offset][j] == 0) { + if (sketches_query[i].size() + sketches_ref[j].size() - intersectionMatrix[i-negative_offset][j] == 0) { continue; } - double jaccard = 1.0 * intersectionMatrix[i-negative_offset][j] / ( sketches[i].size() + sketches[j].size() - intersectionMatrix[i-negative_offset][j] ); - double containment_i_in_j = 1.0 * intersectionMatrix[i-negative_offset][j] / sketches[i].size(); - double containment_j_in_i = 1.0 * intersectionMatrix[i-negative_offset][j] / sketches[j].size(); + double jaccard = 1.0 * intersectionMatrix[i-negative_offset][j] / ( sketches_query[i].size() + sketches_ref[j].size() - intersectionMatrix[i-negative_offset][j] ); + double containment_i_in_j = 1.0 * intersectionMatrix[i-negative_offset][j] / sketches_query[i].size(); + double containment_j_in_i = 1.0 * intersectionMatrix[i-negative_offset][j] / sketches_ref[j].size(); // containment_i_in_j is the containment of query in target, i is the query if (containment_i_in_j < containment_threshold) { @@ -218,48 +215,53 @@ void compute_intersection_matrix_by_sketches(int sketch_start_index, int sketch_ -void compute_intersection_matrix(const int num_sketches, const int num_passes, const int num_threads, - const std::vector>& sketches, - const std::unordered_map>& hash_index, +void compute_intersection_matrix(const int num_sketches_query, const int num_sketches_ref, + const int num_passes, const int num_threads, + const std::vector>& sketches_query, + const std::vector>& sketches_ref, + const std::unordered_map>& hash_index_ref, const std::string& out_dir, std::vector>& similars, double containment_threshold) { + // allocate memory for the intersection matrix - int num_sketches_each_pass = ceil(1.0 * num_sketches / num_passes); - int** intersectionMatrix = new int*[num_sketches_each_pass + 1]; - for (int i = 0; i < num_sketches_each_pass + 1; i++) { - intersectionMatrix[i] = new int[num_sketches]; + int num_query_sketches_each_pass = ceil(1.0 * num_sketches_query / num_passes); + int** intersectionMatrix = new int*[num_query_sketches_each_pass + 1]; + for (int i = 0; i < num_query_sketches_each_pass + 1; i++) { + intersectionMatrix[i] = new int[num_sketches_ref]; } // allocate memory for the similars - for (int i = 0; i < num_sketches; i++) { + for (int i = 0; i < num_sketches_query; i++) { similars.push_back(std::vector()); } for (int pass_id = 0; pass_id < num_passes; pass_id++) { // set zeros in the intersection matrix - for (int i = 0; i < num_sketches_each_pass+1; i++) { - for (uint j = 0; j < num_sketches; j++) { + for (int i = 0; i < num_query_sketches_each_pass+1; i++) { + for (uint j = 0; j < num_sketches_ref; j++) { intersectionMatrix[i][j] = 0; } } // prepare the indices which will be processed in this pass - int sketch_idx_start_this_pass = pass_id * num_sketches_each_pass; - int sketch_idx_end_this_pass = (pass_id == num_passes - 1) ? num_sketches : (pass_id + 1) * num_sketches_each_pass; - int negative_offset = pass_id * num_sketches_each_pass; - int num_sketches_this_pass = sketch_idx_end_this_pass - sketch_idx_start_this_pass; + int sketch_idx_start_this_pass = pass_id * num_query_sketches_each_pass; + int sketch_idx_end_this_pass = (pass_id == num_passes - 1) ? num_sketches_query : (pass_id + 1) * num_query_sketches_each_pass; + int negative_offset = pass_id * num_query_sketches_each_pass; + int num_query_sketches_this_pass = sketch_idx_end_this_pass - sketch_idx_start_this_pass; // create threads std::vector threads; - int chunk_size = num_sketches_this_pass / num_threads; + int chunk_size = num_query_sketches_this_pass / num_threads; for (int i = 0; i < num_threads; i++) { - int start_index_this_thread = sketch_idx_start_this_pass + i * chunk_size; - int end_index_this_thread = (i == num_threads - 1) ? sketch_idx_end_this_pass : sketch_idx_start_this_pass + (i + 1) * chunk_size; - threads.push_back(std::thread(compute_intersection_matrix_by_sketches, start_index_this_thread, - end_index_this_thread, i, out_dir, pass_id, negative_offset, - std::ref(sketches), std::ref(hash_index), - intersectionMatrix, num_sketches, containment_threshold, - std::ref(similars))); + int start_query_index_this_thread = sketch_idx_start_this_pass + i * chunk_size; + int end_query_index_this_thread = (i == num_threads - 1) ? sketch_idx_end_this_pass : sketch_idx_start_this_pass + (i + 1) * chunk_size; + threads.push_back(std::thread(compute_intersection_matrix_by_sketches, + start_query_index_this_thread, end_query_index_this_thread, + i, out_dir, pass_id, negative_offset, + std::ref(sketches_query), std::ref(sketches_ref), + std::ref(hash_index_ref), intersectionMatrix, + num_sketches_query, num_sketches_ref, containment_threshold, + std::ref(similars))); } // join threads @@ -272,7 +274,7 @@ void compute_intersection_matrix(const int num_sketches, const int num_passes, c } // free the memory allocated for the intersection matrix - for (int i = 0; i < num_sketches_each_pass + 1; i++) { + for (int i = 0; i < num_query_sketches_each_pass + 1; i++) { delete[] intersectionMatrix[i]; } delete[] intersectionMatrix; diff --git a/src/cpp/utils.h b/src/cpp/utils.h index 3f584670..2dc2ca4b 100644 --- a/src/cpp/utils.h +++ b/src/cpp/utils.h @@ -41,9 +41,11 @@ void read_sketches(const uint, std::vector>&, void show_empty_sketches(const uint, const std::vector&); -void compute_intersection_matrix(const int num_sketches, const int num_passes, const int num_threads, - const std::vector>& sketches, - const std::unordered_map>& hash_index, +void compute_intersection_matrix(const int num_sketches_query, const int num_sketches_ref, + const int num_passes, const int num_threads, + const std::vector>& sketches_query, + const std::vector>& sketches_ref, + const std::unordered_map>& hash_index_ref, const std::string& out_dir, std::vector>& similars, double containment_threshold); From d03192b03f410ae0fd125dccab12799ac5097b01 Mon Sep 17 00:00:00 2001 From: Mahmudur Date: Wed, 6 Nov 2024 19:44:34 -0500 Subject: [PATCH 08/35] test if different sketches work --- src/cpp/main.cpp | 22 +++++++++++++++++++--- 1 file changed, 19 insertions(+), 3 deletions(-) diff --git a/src/cpp/main.cpp b/src/cpp/main.cpp index b5447b7f..fffc5b09 100644 --- a/src/cpp/main.cpp +++ b/src/cpp/main.cpp @@ -204,10 +204,26 @@ int main(int argc, char *argv[]) { cout << "Reading all sketches in filelist using all " << arguments.number_of_threads << " threads..." << endl; get_sketch_names(arguments.file_list, sketch_names, num_sketches); cout << "Total number of sketches to read: " << num_sketches << endl; - read_sketches(num_sketches, sketches, genome_id_size_pairs, arguments.number_of_threads, sketch_names, count_empty_sketch, empty_sketch_ids, mutex_count_empty_sketch); + read_sketches(num_sketches, sketches, genome_id_size_pairs, arguments.number_of_threads, + sketch_names, count_empty_sketch, + empty_sketch_ids, mutex_count_empty_sketch); auto read_end = chrono::high_resolution_clock::now(); cout << "All sketches read" << endl; + + // **************************************************************** + // ************* Test (dev) *************** + // **************************************************************** + int num_sketches_query = num_sketches; + vector> sketches_query; + vector> genome_id_size_pairs_query; + int count_empty_sketch_query = 0; + vector empty_sketch_ids_query; + read_sketches(num_sketches_query, sketches_query, genome_id_size_pairs_query, + arguments.number_of_threads, + sketch_names, count_empty_sketch_query, + empty_sketch_ids_query, mutex_count_empty_sketch); + // show empty sketches show_empty_sketches(num_sketches, empty_sketch_ids); @@ -236,8 +252,8 @@ int main(int argc, char *argv[]) { // ********************************************************************** auto mat_computation_start = chrono::high_resolution_clock::now(); cout << "Computing intersection matrix..." << endl; - compute_intersection_matrix(num_sketches, num_sketches, arguments.num_of_passes, - arguments.number_of_threads, sketches, sketches, + compute_intersection_matrix(num_sketches_query, num_sketches, arguments.num_of_passes, + arguments.number_of_threads, sketches_query, sketches, hash_index, arguments.working_directory, similars, arguments.containment_threshold); auto mat_computation_end = chrono::high_resolution_clock::now(); From 980ee550ab1b74994a602a64fb2f260ec6f35d89 Mon Sep 17 00:00:00 2001 From: Mahmudur Date: Wed, 6 Nov 2024 19:50:23 -0500 Subject: [PATCH 09/35] remove globals --- src/cpp/main.cpp | 58 ++++++++++++++++++++---------------------------- 1 file changed, 24 insertions(+), 34 deletions(-) diff --git a/src/cpp/main.cpp b/src/cpp/main.cpp index fffc5b09..eb5fd53e 100644 --- a/src/cpp/main.cpp +++ b/src/cpp/main.cpp @@ -46,21 +46,8 @@ typedef Arguments Arguments; typedef unsigned long long int hash_t; -Arguments arguments; -std::vector sketch_names; -uint num_sketches; -vector> sketches; -vector> genome_id_size_pairs; -unordered_map> hash_index; -int count_empty_sketch = 0; -mutex mutex_count_empty_sketch; -vector empty_sketch_ids; -int ** intersectionMatrix; -vector> similars; - - -void parse_arguments(int argc, char *argv[]) { +void parse_arguments(int argc, char *argv[], Arguments &arguments) { argparse::ArgumentParser parser("yacht train using indexing of sketches"); @@ -105,7 +92,7 @@ void parse_arguments(int argc, char *argv[]) { } -void show_arguments() { +void show_arguments(Arguments& arguments) { cout << "Working with the following parameters:" << endl; cout << "**************************************" << endl; cout << "*" << endl; @@ -122,7 +109,10 @@ void show_arguments() { -void do_yacht_train() { +void do_yacht_train(const int num_sketches, const vector>& sketches, + const vector>& genome_id_size_pairs, + const vector>& similars, const vector& sketch_names, + const Arguments& arguments) { cout << "Starting yacht train..." << endl; @@ -183,11 +173,24 @@ void do_yacht_train() { int main(int argc, char *argv[]) { + Arguments arguments; + + std::vector sketch_names; + uint num_sketches; + vector> sketches; + vector> genome_id_size_pairs; + unordered_map> hash_index; + int count_empty_sketch = 0; + mutex mutex_count_empty_sketch; + vector empty_sketch_ids; + int ** intersectionMatrix; + vector> similars; + // ********************************************************* // ***** parse command line arguments ****** // ********************************************************* try { - parse_arguments(argc, argv); + parse_arguments(argc, argv, arguments); } catch (const std::runtime_error &e) { std::cerr << e.what() << std::endl; cout << "Usage: " << argv[0] << " -h" << endl; @@ -195,7 +198,7 @@ int main(int argc, char *argv[]) { } // show the arguments - show_arguments(); + show_arguments(arguments); // ********************************************************* // ************ read the input sketches ************ @@ -211,19 +214,6 @@ int main(int argc, char *argv[]) { cout << "All sketches read" << endl; - // **************************************************************** - // ************* Test (dev) *************** - // **************************************************************** - int num_sketches_query = num_sketches; - vector> sketches_query; - vector> genome_id_size_pairs_query; - int count_empty_sketch_query = 0; - vector empty_sketch_ids_query; - read_sketches(num_sketches_query, sketches_query, genome_id_size_pairs_query, - arguments.number_of_threads, - sketch_names, count_empty_sketch_query, - empty_sketch_ids_query, mutex_count_empty_sketch); - // show empty sketches show_empty_sketches(num_sketches, empty_sketch_ids); @@ -252,8 +242,8 @@ int main(int argc, char *argv[]) { // ********************************************************************** auto mat_computation_start = chrono::high_resolution_clock::now(); cout << "Computing intersection matrix..." << endl; - compute_intersection_matrix(num_sketches_query, num_sketches, arguments.num_of_passes, - arguments.number_of_threads, sketches_query, sketches, + compute_intersection_matrix(num_sketches, num_sketches, arguments.num_of_passes, + arguments.number_of_threads, sketches, sketches, hash_index, arguments.working_directory, similars, arguments.containment_threshold); auto mat_computation_end = chrono::high_resolution_clock::now(); @@ -267,7 +257,7 @@ int main(int argc, char *argv[]) { // ********************************************************************** auto yacht_train_start = chrono::high_resolution_clock::now(); cout << "Starting yacht train..." << endl; - do_yacht_train(); + do_yacht_train(num_sketches, sketches, genome_id_size_pairs, similars, sketch_names, arguments); auto yacht_train_end = chrono::high_resolution_clock::now(); auto yacht_train_duration = chrono::duration_cast(yacht_train_end - yacht_train_start); cout << "Time taken to do yacht train: " << yacht_train_duration.count() << " milliseconds" << endl; From cbdacbb54c9372854b9b415cff4902cfcd7e4e4e Mon Sep 17 00:00:00 2001 From: Mahmudur Date: Wed, 6 Nov 2024 20:14:12 -0500 Subject: [PATCH 10/35] remove precomputation of sizes and ids --- src/cpp/main.cpp | 10 ++++++---- src/cpp/utils.cpp | 9 +++------ src/cpp/utils.h | 8 ++++---- 3 files changed, 13 insertions(+), 14 deletions(-) diff --git a/src/cpp/main.cpp b/src/cpp/main.cpp index eb5fd53e..ab33fc0e 100644 --- a/src/cpp/main.cpp +++ b/src/cpp/main.cpp @@ -110,7 +110,6 @@ void show_arguments(Arguments& arguments) { void do_yacht_train(const int num_sketches, const vector>& sketches, - const vector>& genome_id_size_pairs, const vector>& similars, const vector& sketch_names, const Arguments& arguments) { @@ -120,6 +119,10 @@ void do_yacht_train(const int num_sketches, const vector>& sketch vector genome_id_to_exclude(num_sketches, false); // sort the genome ids by size + vector> genome_id_size_pairs; + for (int i = 0; i < num_sketches; i++) { + genome_id_size_pairs.push_back(make_pair(i, sketches[i].size())); + } sort(genome_id_size_pairs.begin(), genome_id_size_pairs.end(), [](const pair& a, const pair& b) { return a.second < b.second; }); @@ -178,7 +181,6 @@ int main(int argc, char *argv[]) { std::vector sketch_names; uint num_sketches; vector> sketches; - vector> genome_id_size_pairs; unordered_map> hash_index; int count_empty_sketch = 0; mutex mutex_count_empty_sketch; @@ -207,7 +209,7 @@ int main(int argc, char *argv[]) { cout << "Reading all sketches in filelist using all " << arguments.number_of_threads << " threads..." << endl; get_sketch_names(arguments.file_list, sketch_names, num_sketches); cout << "Total number of sketches to read: " << num_sketches << endl; - read_sketches(num_sketches, sketches, genome_id_size_pairs, arguments.number_of_threads, + read_sketches(num_sketches, sketches, arguments.number_of_threads, sketch_names, count_empty_sketch, empty_sketch_ids, mutex_count_empty_sketch); auto read_end = chrono::high_resolution_clock::now(); @@ -257,7 +259,7 @@ int main(int argc, char *argv[]) { // ********************************************************************** auto yacht_train_start = chrono::high_resolution_clock::now(); cout << "Starting yacht train..." << endl; - do_yacht_train(num_sketches, sketches, genome_id_size_pairs, similars, sketch_names, arguments); + do_yacht_train(num_sketches, sketches, similars, sketch_names, arguments); auto yacht_train_end = chrono::high_resolution_clock::now(); auto yacht_train_duration = chrono::duration_cast(yacht_train_end - yacht_train_start); cout << "Time taken to do yacht train: " << yacht_train_duration.count() << " milliseconds" << endl; diff --git a/src/cpp/utils.cpp b/src/cpp/utils.cpp index 5a4103ee..8ed813c5 100644 --- a/src/cpp/utils.cpp +++ b/src/cpp/utils.cpp @@ -79,7 +79,6 @@ void get_sketch_names(const std::string& filelist, std::vector& ske void read_sketches_one_chunk(int start_index, int end_index, std::vector& sketch_names, std::vector>& sketches, - std::vector>& genome_id_size_pairs, std::mutex& mutex_count_empty_sketch, int& count_empty_sketch, std::vector& empty_sketch_ids) { @@ -93,20 +92,18 @@ void read_sketches_one_chunk(int start_index, int end_index, empty_sketch_ids.push_back(i); mutex_count_empty_sketch.unlock(); } - genome_id_size_pairs[i] = {i, sketches[i].size()}; } } void read_sketches(const uint num_sketches, std::vector>& sketches, - std::vector>& genome_id_size_pairs, const uint num_threads, std::vector& sketch_names, - int& count_empty_sketch, std::vector& empty_sketch_ids, std::mutex& mutex_count_empty_sketch) { + int& count_empty_sketch, std::vector& empty_sketch_ids, + std::mutex& mutex_count_empty_sketch) { for (uint i = 0; i < num_sketches; i++) { sketches.push_back( std::vector() ); - genome_id_size_pairs.push_back({-1, 0}); } int chunk_size = num_sketches / num_threads; @@ -116,7 +113,7 @@ void read_sketches(const uint num_sketches, std::vector>& sk int end_index = (i == num_threads - 1) ? num_sketches : (i + 1) * chunk_size; threads.push_back(std::thread(read_sketches_one_chunk, start_index, end_index, std::ref(sketch_names), std::ref(sketches), - std::ref(genome_id_size_pairs), std::ref(mutex_count_empty_sketch), + std::ref(mutex_count_empty_sketch), std::ref(count_empty_sketch), std::ref(empty_sketch_ids))); } for (int i = 0; i < num_threads; i++) { diff --git a/src/cpp/utils.h b/src/cpp/utils.h index 2dc2ca4b..9b33317c 100644 --- a/src/cpp/utils.h +++ b/src/cpp/utils.h @@ -33,10 +33,10 @@ void compute_index_from_sketches(std::vector>&, std::unorder void get_sketch_names(const std::string&, std::vector&, uint&); -void read_sketches(const uint, std::vector>&, - std::vector>&, - const uint, std::vector&, - int&, std::vector&, std::mutex&); +void read_sketches(const uint num_sketches, std::vector>& sketches, + const uint num_threads, std::vector& sketch_names, + int& count_empty_sketch, std::vector& empty_sketch_ids, + std::mutex& mutex_count_empty_sketch); void show_empty_sketches(const uint, const std::vector&); From c675814fac0f61672e7ff6a139342260b7c533db Mon Sep 17 00:00:00 2001 From: Mahmudur Date: Thu, 7 Nov 2024 11:11:24 -0500 Subject: [PATCH 11/35] remove redundant arguments --- src/cpp/main.cpp | 33 ++++++++++++++++----------------- src/cpp/utils.cpp | 46 ++++++++++++++++++++++++++-------------------- src/cpp/utils.h | 22 +++++++++++----------- 3 files changed, 53 insertions(+), 48 deletions(-) diff --git a/src/cpp/main.cpp b/src/cpp/main.cpp index ab33fc0e..0dad479c 100644 --- a/src/cpp/main.cpp +++ b/src/cpp/main.cpp @@ -109,11 +109,14 @@ void show_arguments(Arguments& arguments) { -void do_yacht_train(const int num_sketches, const vector>& sketches, - const vector>& similars, const vector& sketch_names, - const Arguments& arguments) { +void do_yacht_train(const vector>& sketches, + const vector>& similars, + const vector& sketch_names, + const string& output_filename) { cout << "Starting yacht train..." << endl; + + int num_sketches = sketches.size(); vector selected_genome_ids; vector genome_id_to_exclude(num_sketches, false); @@ -161,7 +164,7 @@ void do_yacht_train(const int num_sketches, const vector>& sketch cout << "Writing to output file.." << endl; // write the selected genome ids to file - ofstream outfile(arguments.output_filename); + ofstream outfile(output_filename); for (int i = 0; i < selected_genome_ids.size(); i++) { int genome_id = selected_genome_ids[i]; string sketch_name = sketch_names[genome_id]; @@ -179,10 +182,8 @@ int main(int argc, char *argv[]) { Arguments arguments; std::vector sketch_names; - uint num_sketches; vector> sketches; unordered_map> hash_index; - int count_empty_sketch = 0; mutex mutex_count_empty_sketch; vector empty_sketch_ids; int ** intersectionMatrix; @@ -207,18 +208,16 @@ int main(int argc, char *argv[]) { // ********************************************************* auto read_start = chrono::high_resolution_clock::now(); cout << "Reading all sketches in filelist using all " << arguments.number_of_threads << " threads..." << endl; - get_sketch_names(arguments.file_list, sketch_names, num_sketches); - cout << "Total number of sketches to read: " << num_sketches << endl; - read_sketches(num_sketches, sketches, arguments.number_of_threads, - sketch_names, count_empty_sketch, - empty_sketch_ids, mutex_count_empty_sketch); + get_sketch_names(arguments.file_list, sketch_names); + cout << "Total number of sketches to read: " << sketch_names.size() << endl; + read_sketches(sketch_names, sketches, empty_sketch_ids, arguments.number_of_threads); auto read_end = chrono::high_resolution_clock::now(); cout << "All sketches read" << endl; // show empty sketches - show_empty_sketches(num_sketches, empty_sketch_ids); + show_empty_sketches(empty_sketch_ids); // show time taken to read all sketches auto read_duration = chrono::duration_cast(read_end - read_start); @@ -244,10 +243,10 @@ int main(int argc, char *argv[]) { // ********************************************************************** auto mat_computation_start = chrono::high_resolution_clock::now(); cout << "Computing intersection matrix..." << endl; - compute_intersection_matrix(num_sketches, num_sketches, arguments.num_of_passes, - arguments.number_of_threads, sketches, sketches, - hash_index, arguments.working_directory, similars, - arguments.containment_threshold); + compute_intersection_matrix(sketches, sketches, hash_index, + arguments.working_directory, similars, + arguments.containment_threshold, arguments.num_of_passes, + arguments.number_of_threads); auto mat_computation_end = chrono::high_resolution_clock::now(); auto mat_computation_duration = chrono::duration_cast(mat_computation_end - mat_computation_start); cout << "Time taken to compute intersection matrix: " << mat_computation_duration.count() << " milliseconds" << endl; @@ -259,7 +258,7 @@ int main(int argc, char *argv[]) { // ********************************************************************** auto yacht_train_start = chrono::high_resolution_clock::now(); cout << "Starting yacht train..." << endl; - do_yacht_train(num_sketches, sketches, similars, sketch_names, arguments); + do_yacht_train(sketches, similars, sketch_names, arguments.output_filename); auto yacht_train_end = chrono::high_resolution_clock::now(); auto yacht_train_duration = chrono::duration_cast(yacht_train_end - yacht_train_start); cout << "Time taken to do yacht train: " << yacht_train_duration.count() << " milliseconds" << endl; diff --git a/src/cpp/utils.cpp b/src/cpp/utils.cpp index 8ed813c5..78b42bb1 100644 --- a/src/cpp/utils.cpp +++ b/src/cpp/utils.cpp @@ -60,7 +60,7 @@ void compute_index_from_sketches(std::vector>& sketches, std -void get_sketch_names(const std::string& filelist, std::vector& sketch_names, uint& num_sketches) { +void get_sketch_names(const std::string& filelist, std::vector& sketch_names) { // the filelist is a file, where each line is a path to a sketch file std::ifstream file(filelist); if (!file.is_open()) { @@ -71,7 +71,6 @@ void get_sketch_names(const std::string& filelist, std::vector& ske while (std::getline(file, line)) { sketch_names.push_back(line); } - num_sketches = sketch_names.size(); } @@ -80,7 +79,6 @@ void read_sketches_one_chunk(int start_index, int end_index, std::vector& sketch_names, std::vector>& sketches, std::mutex& mutex_count_empty_sketch, - int& count_empty_sketch, std::vector& empty_sketch_ids) { for (int i = start_index; i < end_index; i++) { @@ -88,7 +86,6 @@ void read_sketches_one_chunk(int start_index, int end_index, sketches[i] = min_hashes_genome_name; if (sketches[i].size() == 0) { mutex_count_empty_sketch.lock(); - count_empty_sketch++; empty_sketch_ids.push_back(i); mutex_count_empty_sketch.unlock(); } @@ -97,24 +94,27 @@ void read_sketches_one_chunk(int start_index, int end_index, -void read_sketches(const uint num_sketches, std::vector>& sketches, - const uint num_threads, std::vector& sketch_names, - int& count_empty_sketch, std::vector& empty_sketch_ids, - std::mutex& mutex_count_empty_sketch) { +void read_sketches(std::vector& sketch_names, + std::vector>& sketches, + std::vector& empty_sketch_ids, + const uint num_threads) { + uint num_sketches = sketch_names.size(); for (uint i = 0; i < num_sketches; i++) { sketches.push_back( std::vector() ); } + std::mutex mutex_count_empty_sketch; int chunk_size = num_sketches / num_threads; std::vector threads; for (int i = 0; i < num_threads; i++) { int start_index = i * chunk_size; int end_index = (i == num_threads - 1) ? num_sketches : (i + 1) * chunk_size; - threads.push_back(std::thread(read_sketches_one_chunk, start_index, end_index, - std::ref(sketch_names), std::ref(sketches), - std::ref(mutex_count_empty_sketch), - std::ref(count_empty_sketch), std::ref(empty_sketch_ids))); + threads.push_back(std::thread(read_sketches_one_chunk, + start_index, end_index, + std::ref(sketch_names), std::ref(sketches), + std::ref(mutex_count_empty_sketch), + std::ref(empty_sketch_ids))); } for (int i = 0; i < num_threads; i++) { threads[i].join(); @@ -125,7 +125,8 @@ void read_sketches(const uint num_sketches, std::vector>& sk -void show_empty_sketches(const uint count_empty_sketch, const std::vector& empty_sketch_ids) { +void show_empty_sketches(const std::vector& empty_sketch_ids) { + int count_empty_sketch = empty_sketch_ids.size(); std::cout << "Number of empty sketches: " << count_empty_sketch << std::endl; if (count_empty_sketch == 0) { return; @@ -148,10 +149,12 @@ void compute_intersection_matrix_by_sketches(int query_sketch_start_index, int q const std::vector>& sketches_ref, const std::unordered_map>& hash_index_ref, int** intersectionMatrix, - const int num_sketches_query, const int num_sketches_ref, double containment_threshold, std::vector>& similars) { + const int num_sketches_ref = sketches_ref.size(); + const int num_sketches_query = sketches_query.size(); + // process the sketches in the range [sketch_start_index, sketch_end_index) for (uint i = query_sketch_start_index; i < query_sketch_end_index; i++) { for (int j = 0; j < sketches_query[i].size(); j++) { @@ -212,14 +215,17 @@ void compute_intersection_matrix_by_sketches(int query_sketch_start_index, int q -void compute_intersection_matrix(const int num_sketches_query, const int num_sketches_ref, - const int num_passes, const int num_threads, - const std::vector>& sketches_query, +void compute_intersection_matrix(const std::vector>& sketches_query, const std::vector>& sketches_ref, const std::unordered_map>& hash_index_ref, - const std::string& out_dir, std::vector>& similars, - double containment_threshold) { + const std::string& out_dir, + std::vector>& similars, + double containment_threshold, + const int num_passes, const int num_threads) { + int num_sketches_query = sketches_query.size(); + int num_sketches_ref = sketches_ref.size(); + // allocate memory for the intersection matrix int num_query_sketches_each_pass = ceil(1.0 * num_sketches_query / num_passes); int** intersectionMatrix = new int*[num_query_sketches_each_pass + 1]; @@ -257,7 +263,7 @@ void compute_intersection_matrix(const int num_sketches_query, const int num_ske i, out_dir, pass_id, negative_offset, std::ref(sketches_query), std::ref(sketches_ref), std::ref(hash_index_ref), intersectionMatrix, - num_sketches_query, num_sketches_ref, containment_threshold, + containment_threshold, std::ref(similars))); } diff --git a/src/cpp/utils.h b/src/cpp/utils.h index 9b33317c..aac5a6e8 100644 --- a/src/cpp/utils.h +++ b/src/cpp/utils.h @@ -31,22 +31,22 @@ std::vector read_min_hashes(const std::string&); void compute_index_from_sketches(std::vector>&, std::unordered_map>&); -void get_sketch_names(const std::string&, std::vector&, uint&); +void get_sketch_names(const std::string&, std::vector&); -void read_sketches(const uint num_sketches, std::vector>& sketches, - const uint num_threads, std::vector& sketch_names, - int& count_empty_sketch, std::vector& empty_sketch_ids, - std::mutex& mutex_count_empty_sketch); +void read_sketches(std::vector& sketch_names, + std::vector>& sketches, + std::vector& empty_sketch_ids, + const uint num_threads); -void show_empty_sketches(const uint, const std::vector&); +void show_empty_sketches(const std::vector&); -void compute_intersection_matrix(const int num_sketches_query, const int num_sketches_ref, - const int num_passes, const int num_threads, - const std::vector>& sketches_query, +void compute_intersection_matrix(const std::vector>& sketches_query, const std::vector>& sketches_ref, const std::unordered_map>& hash_index_ref, - const std::string& out_dir, std::vector>& similars, - double containment_threshold); + const std::string& out_dir, + std::vector>& similars, + double containment_threshold, + const int num_passes, const int num_threads); #endif \ No newline at end of file From de66de790387505b486a437425abc366cd6a9913 Mon Sep 17 00:00:00 2001 From: Mahmudur Date: Thu, 7 Nov 2024 11:14:32 -0500 Subject: [PATCH 12/35] keep single appearing sketches --- src/cpp/utils.cpp | 18 ++---------------- 1 file changed, 2 insertions(+), 16 deletions(-) diff --git a/src/cpp/utils.cpp b/src/cpp/utils.cpp index 78b42bb1..96818d5d 100644 --- a/src/cpp/utils.cpp +++ b/src/cpp/utils.cpp @@ -39,22 +39,8 @@ void compute_index_from_sketches(std::vector>& sketches, std size_t num_hashes = hash_index.size(); - // remove the hashes that only appear in one sketch - std::vector hashes_to_remove; - for (auto it = hash_index.begin(); it != hash_index.end(); it++) { - if (it->second.size() == 1) { - hashes_to_remove.push_back(it->first); - } - } - for (uint i = 0; i < hashes_to_remove.size(); i++) { - hash_index.erase(hashes_to_remove[i]); - } - - size_t num_hashes_after_removal = hash_index.size(); - - std::cout << "Total number of distinct hashes: " << num_hashes << std::endl; - std::cout << "Total number of distinct hashes that appear in only one sketch: " << num_hashes - num_hashes_after_removal << std::endl; - std::cout << "Size of the index: " << num_hashes_after_removal << std::endl; + // cannot remove hashes that are in only one sketch, because + // we do not have an index for the query sketches } From ccba5fe4f3c41f391cb94f38528a7e0f397bdcba Mon Sep 17 00:00:00 2001 From: Mahmudur Date: Thu, 7 Nov 2024 11:26:52 -0500 Subject: [PATCH 13/35] rename to yacht train code --- Makefile | 2 +- src/cpp/{main.cpp => yacht_train_core.cpp} | 0 2 files changed, 1 insertion(+), 1 deletion(-) rename src/cpp/{main.cpp => yacht_train_core.cpp} (100%) diff --git a/Makefile b/Makefile index ca7d70d4..66b1bb93 100644 --- a/Makefile +++ b/Makefile @@ -7,7 +7,7 @@ SRC_DIR = src/cpp BIN_DIR = src/yacht # Source files -SRC_FILES = $(SRC_DIR)/main.cpp $(SRC_DIR)/utils.cpp +SRC_FILES = $(SRC_DIR)/yacht_train_core.cpp $(SRC_DIR)/utils.cpp # Object files OBJ_FILES = $(SRC_FILES:.cpp=.o) diff --git a/src/cpp/main.cpp b/src/cpp/yacht_train_core.cpp similarity index 100% rename from src/cpp/main.cpp rename to src/cpp/yacht_train_core.cpp From 71a4438cea97e45b1c7fb229f6e6408f04350414 Mon Sep 17 00:00:00 2001 From: Mahmudur Date: Thu, 7 Nov 2024 11:54:31 -0500 Subject: [PATCH 14/35] name sketch names to sketch paths --- src/cpp/utils.cpp | 16 ++++++++-------- src/cpp/utils.h | 7 +++++-- src/cpp/yacht_train_core.cpp | 16 ++++++++-------- 3 files changed, 21 insertions(+), 18 deletions(-) diff --git a/src/cpp/utils.cpp b/src/cpp/utils.cpp index 96818d5d..65e09220 100644 --- a/src/cpp/utils.cpp +++ b/src/cpp/utils.cpp @@ -46,7 +46,7 @@ void compute_index_from_sketches(std::vector>& sketches, std -void get_sketch_names(const std::string& filelist, std::vector& sketch_names) { +void get_sketch_paths(const std::string& filelist, std::vector& sketch_paths) { // the filelist is a file, where each line is a path to a sketch file std::ifstream file(filelist); if (!file.is_open()) { @@ -55,21 +55,21 @@ void get_sketch_names(const std::string& filelist, std::vector& ske } std::string line; while (std::getline(file, line)) { - sketch_names.push_back(line); + sketch_paths.push_back(line); } } void read_sketches_one_chunk(int start_index, int end_index, - std::vector& sketch_names, + std::vector& sketch_paths, std::vector>& sketches, std::mutex& mutex_count_empty_sketch, std::vector& empty_sketch_ids) { for (int i = start_index; i < end_index; i++) { - auto min_hashes_genome_name = read_min_hashes(sketch_names[i]); - sketches[i] = min_hashes_genome_name; + auto min_hashes = read_min_hashes(sketch_paths[i]); + sketches[i] = min_hashes; if (sketches[i].size() == 0) { mutex_count_empty_sketch.lock(); empty_sketch_ids.push_back(i); @@ -80,12 +80,12 @@ void read_sketches_one_chunk(int start_index, int end_index, -void read_sketches(std::vector& sketch_names, +void read_sketches(std::vector& sketch_paths, std::vector>& sketches, std::vector& empty_sketch_ids, const uint num_threads) { - uint num_sketches = sketch_names.size(); + uint num_sketches = sketch_paths.size(); for (uint i = 0; i < num_sketches; i++) { sketches.push_back( std::vector() ); } @@ -98,7 +98,7 @@ void read_sketches(std::vector& sketch_names, int end_index = (i == num_threads - 1) ? num_sketches : (i + 1) * chunk_size; threads.push_back(std::thread(read_sketches_one_chunk, start_index, end_index, - std::ref(sketch_names), std::ref(sketches), + std::ref(sketch_paths), std::ref(sketches), std::ref(mutex_count_empty_sketch), std::ref(empty_sketch_ids))); } diff --git a/src/cpp/utils.h b/src/cpp/utils.h index aac5a6e8..26ca58fd 100644 --- a/src/cpp/utils.h +++ b/src/cpp/utils.h @@ -31,9 +31,12 @@ std::vector read_min_hashes(const std::string&); void compute_index_from_sketches(std::vector>&, std::unordered_map>&); -void get_sketch_names(const std::string&, std::vector&); +/* +Function to read the paths of the sketches from a +*/ +void get_sketch_paths(const std::string&, std::vector&); -void read_sketches(std::vector& sketch_names, +void read_sketches(std::vector& sketch_paths, std::vector>& sketches, std::vector& empty_sketch_ids, const uint num_threads); diff --git a/src/cpp/yacht_train_core.cpp b/src/cpp/yacht_train_core.cpp index 0dad479c..5b7f3cbd 100644 --- a/src/cpp/yacht_train_core.cpp +++ b/src/cpp/yacht_train_core.cpp @@ -111,7 +111,7 @@ void show_arguments(Arguments& arguments) { void do_yacht_train(const vector>& sketches, const vector>& similars, - const vector& sketch_names, + const vector& sketch_paths, const string& output_filename) { cout << "Starting yacht train..." << endl; @@ -163,11 +163,11 @@ void do_yacht_train(const vector>& sketches, cout << "Writing to output file.." << endl; - // write the selected genome ids to file + // write the selected sketch paths to file ofstream outfile(output_filename); for (int i = 0; i < selected_genome_ids.size(); i++) { int genome_id = selected_genome_ids[i]; - string sketch_name = sketch_names[genome_id]; + string sketch_name = sketch_paths[genome_id]; outfile << sketch_name << endl; } outfile.close(); @@ -181,7 +181,7 @@ int main(int argc, char *argv[]) { Arguments arguments; - std::vector sketch_names; + std::vector sketch_paths; vector> sketches; unordered_map> hash_index; mutex mutex_count_empty_sketch; @@ -208,9 +208,9 @@ int main(int argc, char *argv[]) { // ********************************************************* auto read_start = chrono::high_resolution_clock::now(); cout << "Reading all sketches in filelist using all " << arguments.number_of_threads << " threads..." << endl; - get_sketch_names(arguments.file_list, sketch_names); - cout << "Total number of sketches to read: " << sketch_names.size() << endl; - read_sketches(sketch_names, sketches, empty_sketch_ids, arguments.number_of_threads); + get_sketch_paths(arguments.file_list, sketch_paths); + cout << "Total number of sketches to read: " << sketch_paths.size() << endl; + read_sketches(sketch_paths, sketches, empty_sketch_ids, arguments.number_of_threads); auto read_end = chrono::high_resolution_clock::now(); cout << "All sketches read" << endl; @@ -258,7 +258,7 @@ int main(int argc, char *argv[]) { // ********************************************************************** auto yacht_train_start = chrono::high_resolution_clock::now(); cout << "Starting yacht train..." << endl; - do_yacht_train(sketches, similars, sketch_names, arguments.output_filename); + do_yacht_train(sketches, similars, sketch_paths, arguments.output_filename); auto yacht_train_end = chrono::high_resolution_clock::now(); auto yacht_train_duration = chrono::duration_cast(yacht_train_end - yacht_train_start); cout << "Time taken to do yacht train: " << yacht_train_duration.count() << " milliseconds" << endl; From 26faba09bc0d0b70aef1349fc29d4db6ce4f77e4 Mon Sep 17 00:00:00 2001 From: Mahmudur Date: Thu, 7 Nov 2024 11:58:36 -0500 Subject: [PATCH 15/35] added code for computing similarity --- Makefile | 17 ++-- src/cpp/compute_similarity.cpp | 179 +++++++++++++++++++++++++++++++++ 2 files changed, 190 insertions(+), 6 deletions(-) create mode 100644 src/cpp/compute_similarity.cpp diff --git a/Makefile b/Makefile index 66b1bb93..856931ee 100644 --- a/Makefile +++ b/Makefile @@ -7,13 +7,13 @@ SRC_DIR = src/cpp BIN_DIR = src/yacht # Source files -SRC_FILES = $(SRC_DIR)/yacht_train_core.cpp $(SRC_DIR)/utils.cpp +SRC_FILES = $(SRC_DIR)/yacht_train_core.cpp $(SRC_DIR)/utils.cpp $(SRC_DIR)/compute_similarity.cpp # Object files OBJ_FILES = $(SRC_FILES:.cpp=.o) # Target executable -TARGET = $(BIN_DIR)/run_yacht_train_core +TARGET = $(BIN_DIR)/run_yacht_train_core $(BIN_DIR)/run_compute_similarity # Default target all: $(TARGET) @@ -28,10 +28,15 @@ $(OBJ_FILES): %.o: %.cpp echo "Compiling: $<" $(CXX) $(CXXFLAGS) -c $< -o $@ -# build the target executable -$(TARGET): $(OBJ_FILES) | $(BIN_DIR) - echo "Linking to create executable: $(TARGET)" - $(CXX) $(CXXFLAGS) $(OBJ_FILES) -o $(TARGET) -lpthread +# build the target run_yacht_train_core +$(BIN_DIR)/run_yacht_train_core: $(OBJ_FILES) + echo "Building target: $@" + $(CXX) $(CXXFLAGS) $(SRC_DIR)/yacht_train_core.cpp $(OBJ_FILES) -o $@ + +# build the target run_compute_similarity +$(BIN_DIR)/run_compute_similarity: $(OBJ_FILES) + echo "Building target: $@" + $(CXX) $(CXXFLAGS) $(SRC_DIR)/compute_similarity.cpp $(OBJ_FILES) -o $@ # clean up clean: diff --git a/src/cpp/compute_similarity.cpp b/src/cpp/compute_similarity.cpp new file mode 100644 index 00000000..45d27210 --- /dev/null +++ b/src/cpp/compute_similarity.cpp @@ -0,0 +1,179 @@ +/* + * Author: Mahmudur Rahman Hera (mahmudhera93@gmail.com) + * Date: November 1, 2024 + * Description: yacht train core using indexing of sketches to do genome comparison + */ + +#include "argparse.hpp" +#include "json.hpp" +#include "utils.h" + +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include + +using namespace std; +using json = nlohmann::json; + +struct Arguments { + string file_list_query; + string file_list_target; + string output_directory; + int number_of_threads; + int num_of_passes; + double containment_threshold; + bool combine; +}; + + +typedef Arguments Arguments; +typedef unsigned long long int hash_t; + + +void parse_arguments(int argc, char *argv[], Arguments &arguments) { + + argparse::ArgumentParser parser("yacht train using indexing of sketches"); + + parser.add_argument("file_list_query") + .help("file containing paths of query sketches") + .store_into(arguments.file_list_query); + + parser.add_argument("file_list_target") + .help("file containing paths of target sketches") + .store_into(arguments.file_list_target); + + parser.add_argument("output_directory") + .help("output directory (where similarity values will be written)") + .store_into(arguments.output_directory); + + parser.add_argument("-t", "--threads") + .help("number of threads") + .scan<'i', int>() + .default_value(1) + .store_into(arguments.number_of_threads); + + parser.add_argument("-p", "--passes") + .help("number of passes") + .scan<'i', int>() + .default_value(1) + .store_into(arguments.num_of_passes); + + parser.add_argument("-c", "--containment_threshold") + .help("containment threshold") + .scan<'g', double>() + .default_value(0.9) + .store_into(arguments.containment_threshold); + + // argument: combine files (store true if present) + parser.add_argument("-C", "--combine") + .help("combine the output files") + .default_value(false) + .implicit_value(true) + .store_into(arguments.combine); + + parser.parse_args(argc, argv); + + if (arguments.number_of_threads < 1) { + throw std::runtime_error("number of threads must be at least 1"); + } + + if (arguments.num_of_passes < 1) { + throw std::runtime_error("number of passes must be at least 1"); + } + + if (arguments.containment_threshold < 0.0 || arguments.containment_threshold > 1.0) { + throw std::runtime_error("containment threshold must be between 0.0 and 1.0"); + } + +} + + +void show_arguments(Arguments& args) { + cout << "**************************************" << endl; + cout << "*" << endl; + cout << "* file_list_query: " << args.file_list_query << endl; + cout << "* file_list_target: " << args.file_list_target << endl; + cout << "* output_directory: " << args.output_directory << endl; + cout << "* number_of_threads: " << args.number_of_threads << endl; + cout << "* num_of_passes: " << args.num_of_passes << endl; + cout << "* containment_threshold: " << args.containment_threshold << endl; + cout << "* combine: " << args.combine << endl; + cout << "*" << endl; + cout << "**************************************" << endl; +} + + + +int main(int argc, char** argv) { + Arguments args; + + // parse the arguments + try { + parse_arguments(argc, argv, args); + } catch (const std::runtime_error &e) { + std::cerr << e.what() << std::endl; + cout << "Usage: " << argv[0] << " -h" << endl; + return 1; + } + + // show the arguments + show_arguments(args); + + // read the query sketches + cout << "Reading query sketches..." << endl; + vector sketch_paths_query; + vector> sketches_query; + vector empty_sketch_ids_query; + get_sketch_paths(args.file_list_query, sketch_paths_query); + read_sketches(sketch_paths_query, sketches_query, empty_sketch_ids_query, args.number_of_threads); + cout << "All query sketches read" << endl; + + // read the target sketches + cout << "Reading target sketches..." << endl; + vector sketch_paths_target; + vector> sketches_target; + vector empty_sketch_ids_target; + get_sketch_paths(args.file_list_target, sketch_paths_target); + read_sketches(sketch_paths_target, sketches_target, empty_sketch_ids_target, args.number_of_threads); + + // show empty sketches + cout << "Empty sketches in query:" << endl; + show_empty_sketches(empty_sketch_ids_query); + cout << "Empty sketches in target:" << endl; + show_empty_sketches(empty_sketch_ids_target); + + // compute the index from the target sketches + cout << "Building index from target sketches..." << endl; + unordered_map> hash_index_target; + compute_index_from_sketches(sketches_target, hash_index_target); + + // compute the similarity matrix + cout << "Computing similarity matrix..." << endl; + vector> similars; + compute_intersection_matrix(sketches_query, sketches_target, + hash_index_target, + args.output_directory, similars, + args.containment_threshold, + args.num_of_passes, + args.number_of_threads); + + cout << "similarity computation completed, results are here: " << args.output_directory << endl; + + return 0; +} \ No newline at end of file From a2e7a244b19b88012ec66a39982bccae7b41fb6e Mon Sep 17 00:00:00 2001 From: Mahmudur Date: Thu, 7 Nov 2024 12:01:07 -0500 Subject: [PATCH 16/35] fix linking --- Makefile | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/Makefile b/Makefile index 856931ee..83336a26 100644 --- a/Makefile +++ b/Makefile @@ -31,12 +31,12 @@ $(OBJ_FILES): %.o: %.cpp # build the target run_yacht_train_core $(BIN_DIR)/run_yacht_train_core: $(OBJ_FILES) echo "Building target: $@" - $(CXX) $(CXXFLAGS) $(SRC_DIR)/yacht_train_core.cpp $(OBJ_FILES) -o $@ + $(CXX) $(CXXFLAGS) $(SRC_DIR)/yacht_train_core.cpp $(SRC_DIR)/utils.o -o $@ # build the target run_compute_similarity $(BIN_DIR)/run_compute_similarity: $(OBJ_FILES) echo "Building target: $@" - $(CXX) $(CXXFLAGS) $(SRC_DIR)/compute_similarity.cpp $(OBJ_FILES) -o $@ + $(CXX) $(CXXFLAGS) $(SRC_DIR)/compute_similarity.cpp $(SRC_DIR)/utils.o -o $@ # clean up clean: From a03b6b16e33e6eaf53a943c09cfc41a2644c6e76 Mon Sep 17 00:00:00 2001 From: Mahmudur Date: Thu, 7 Nov 2024 12:03:59 -0500 Subject: [PATCH 17/35] fix linking --- Makefile | 37 ++++++++++++++----------------------- 1 file changed, 14 insertions(+), 23 deletions(-) diff --git a/Makefile b/Makefile index 83336a26..e4113749 100644 --- a/Makefile +++ b/Makefile @@ -12,32 +12,23 @@ SRC_FILES = $(SRC_DIR)/yacht_train_core.cpp $(SRC_DIR)/utils.cpp $(SRC_DIR)/comp # Object files OBJ_FILES = $(SRC_FILES:.cpp=.o) -# Target executable -TARGET = $(BIN_DIR)/run_yacht_train_core $(BIN_DIR)/run_compute_similarity +# target executable +TARGET1 = $(BIN_DIR)/run_yacht_train_core +TARGET2 = $(BIN_DIR)/run_compute_similarity -# Default target -all: $(TARGET) +# Build rules +all: $(TARGET1) $(TARGET2) -# Create the bin directory if it doesn't exist -$(BIN_DIR): - echo "Creating directory: $(BIN_DIR)" - mkdir -p $(BIN_DIR) +$(TARGET1): $(OBJ_FILES) + $(CXX) $(CXXFLAGS) $(SRC_DIR)/yacht_train_core.cpp $(SRC_DIR)/utils.cpp -o $(TARGET1) -# build the object files -$(OBJ_FILES): %.o: %.cpp - echo "Compiling: $<" - $(CXX) $(CXXFLAGS) -c $< -o $@ +$(TARGET2): $(OBJ_FILES) + $(CXX) $(CXXFLAGS) $(SRC_DIR)/compute_similarity.cpp $(SRC_DIR)/utils.cpp -o $(TARGET2) -# build the target run_yacht_train_core -$(BIN_DIR)/run_yacht_train_core: $(OBJ_FILES) - echo "Building target: $@" - $(CXX) $(CXXFLAGS) $(SRC_DIR)/yacht_train_core.cpp $(SRC_DIR)/utils.o -o $@ +%.o: %.cpp -# build the target run_compute_similarity -$(BIN_DIR)/run_compute_similarity: $(OBJ_FILES) - echo "Building target: $@" - $(CXX) $(CXXFLAGS) $(SRC_DIR)/compute_similarity.cpp $(SRC_DIR)/utils.o -o $@ - -# clean up clean: - rm -f $(OBJ_FILES) $(TARGET) \ No newline at end of file + rm -f $(OBJ_FILES) $(TARGET1) $(TARGET2) + +.PHONY: all clean + From c682943762ef3142fdd02d91a00078c619aa3cd3 Mon Sep 17 00:00:00 2001 From: Mahmudur Date: Thu, 7 Nov 2024 12:04:48 -0500 Subject: [PATCH 18/35] fix build --- Makefile | 1 + 1 file changed, 1 insertion(+) diff --git a/Makefile b/Makefile index e4113749..a20ca068 100644 --- a/Makefile +++ b/Makefile @@ -26,6 +26,7 @@ $(TARGET2): $(OBJ_FILES) $(CXX) $(CXXFLAGS) $(SRC_DIR)/compute_similarity.cpp $(SRC_DIR)/utils.cpp -o $(TARGET2) %.o: %.cpp + $(CXX) $(CXXFLAGS) -c $< -o $@ clean: rm -f $(OBJ_FILES) $(TARGET1) $(TARGET2) From d31c45f1c1293a5ec9a64ca36c41675b7827048a Mon Sep 17 00:00:00 2001 From: Mahmudur Date: Thu, 7 Nov 2024 12:13:21 -0500 Subject: [PATCH 19/35] combine output --- src/cpp/compute_similarity.cpp | 17 ++++++++++++++++- 1 file changed, 16 insertions(+), 1 deletion(-) diff --git a/src/cpp/compute_similarity.cpp b/src/cpp/compute_similarity.cpp index 45d27210..e564a395 100644 --- a/src/cpp/compute_similarity.cpp +++ b/src/cpp/compute_similarity.cpp @@ -39,6 +39,7 @@ struct Arguments { int num_of_passes; double containment_threshold; bool combine; + string combined_output_filename; }; @@ -86,6 +87,11 @@ void parse_arguments(int argc, char *argv[], Arguments &arguments) { .default_value(false) .implicit_value(true) .store_into(arguments.combine); + + // argument: combined output filename + parser.add_argument("-o", "--output") + .help("output filename (where the combined output will be written. Not used if -C is not present)") + .store_into(arguments.combined_output_filename); parser.parse_args(argc, argv); @@ -113,7 +119,8 @@ void show_arguments(Arguments& args) { cout << "* number_of_threads: " << args.number_of_threads << endl; cout << "* num_of_passes: " << args.num_of_passes << endl; cout << "* containment_threshold: " << args.containment_threshold << endl; - cout << "* combine: " << args.combine << endl; + cout << "* combine: " << bool(args.combine) << endl; + cout << "* combined_output_filename: " << args.combined_output_filename << endl; cout << "*" << endl; cout << "**************************************" << endl; } @@ -175,5 +182,13 @@ int main(int argc, char** argv) { cout << "similarity computation completed, results are here: " << args.output_directory << endl; + if (args.combine) { + cout << "Combining the output files..." << endl; + // cat all the files in the output directory + string command = "cat " + args.output_directory + "/*.txt > " + args.combined_output_filename; + system(command.c_str()); + cout << "Combined output written to: " << args.combined_output_filename << endl; + } + return 0; } \ No newline at end of file From 398538e6add6430919c579f164166797b237fdc2 Mon Sep 17 00:00:00 2001 From: Mahmudur Date: Thu, 7 Nov 2024 12:14:50 -0500 Subject: [PATCH 20/35] add default value --- src/cpp/compute_similarity.cpp | 1 + 1 file changed, 1 insertion(+) diff --git a/src/cpp/compute_similarity.cpp b/src/cpp/compute_similarity.cpp index e564a395..55baf952 100644 --- a/src/cpp/compute_similarity.cpp +++ b/src/cpp/compute_similarity.cpp @@ -91,6 +91,7 @@ void parse_arguments(int argc, char *argv[], Arguments &arguments) { // argument: combined output filename parser.add_argument("-o", "--output") .help("output filename (where the combined output will be written. Not used if -C is not present)") + .default_value("combined_output.txt") .store_into(arguments.combined_output_filename); parser.parse_args(argc, argv); From 42d1717566dea73695ebc3d668e1cfdc1e1d7717 Mon Sep 17 00:00:00 2001 From: Mahmudur Date: Thu, 7 Nov 2024 13:59:27 -0500 Subject: [PATCH 21/35] add documentations --- src/cpp/compute_similarity.cpp | 22 +++++++++- src/cpp/utils.h | 74 +++++++++++++++++++++++++++++++--- 2 files changed, 88 insertions(+), 8 deletions(-) diff --git a/src/cpp/compute_similarity.cpp b/src/cpp/compute_similarity.cpp index 55baf952..6dd04a67 100644 --- a/src/cpp/compute_similarity.cpp +++ b/src/cpp/compute_similarity.cpp @@ -1,7 +1,17 @@ /* * Author: Mahmudur Rahman Hera (mahmudhera93@gmail.com) * Date: November 1, 2024 - * Description: yacht train core using indexing of sketches to do genome comparison + * Description: This code reads the query and target sketches from the files, builds an index from the target sketches, and computes the similarity matrix. + * All query vs all target pairs are written if containment(query,target) >= provided threshold. + * + * Output files are written in the output directory. Many output files are + * generated, in the form a_bcd.txt, where a is the pass id, and bcd is the thread id. + * By default, the output files are not combined. If you want to combine the output files, + * use the -C flag. The combined output file will be written to the output filename provided. + * Each line in the output file contains the query and target sketch ids, and the similarity value. + * A typical line in the output file looks like this: 12 34 0.2 0.3 0.4 + * This means that the (12+1)-th query sketch is similar to the (34+1)-th target sketch, + * and the Jaccard, containment(query,target), and containment(target,query) values are 0.2, 0.3, and 0.4. */ #include "argparse.hpp" @@ -49,7 +59,15 @@ typedef unsigned long long int hash_t; void parse_arguments(int argc, char *argv[], Arguments &arguments) { - argparse::ArgumentParser parser("yacht train using indexing of sketches"); + argparse::ArgumentParser parser("compute similarity of targets with queries"); + + parser.add_description("This code reads the query and target sketches from the files, builds an index from the target sketches, and computes the similarity matrix.\n" + "All query vs all target pairs are written if containment(query,target) >= provided threshold.\n" + "Output files are written in the output directory. Many output files are generated, in the form a_bcd.txt, where a is the pass id, and bcd is the thread id.\n" + "By default, the output files are not combined. If you want to combine the output files, use the -C flag. The combined output file will be written to the output filename provided.\n" + "Each line in the output file contains the query and target sketch ids, and the similarity value.\n" + "A typical line in the output file looks like this: 12,34,0.2,0.3,0.4\n" + "This means that the (12+1)-th query sketch is similar to the (34+1)-th target sketch, and the Jaccard, containment(query,target), and containment(target,query) values are 0.2, 0.3, and 0.4."); parser.add_argument("file_list_query") .help("file containing paths of query sketches") diff --git a/src/cpp/utils.h b/src/cpp/utils.h index 26ca58fd..432f04c0 100644 --- a/src/cpp/utils.h +++ b/src/cpp/utils.h @@ -27,23 +27,85 @@ using json = nlohmann::json; typedef unsigned long long int hash_t; -std::vector read_min_hashes(const std::string&); +/** + * @brief Read the min-hashes from a FMH sketch file + * + * Assumption: the file is a json file, and its not gzipped + * + * @param sketch_path The path to the sketch file + */ +std::vector read_min_hashes(const std::string& sketch_path); -void compute_index_from_sketches(std::vector>&, std::unordered_map>&); -/* -Function to read the paths of the sketches from a -*/ -void get_sketch_paths(const std::string&, std::vector&); + + + +/** + * @brief Compute the index from the sketches + * + * @param sketches The sketches + * @param hash_index The reference to the hash index (where the index will be stored) + */ +void compute_index_from_sketches(std::vector>& sketches, std::unordered_map>& hash_index); + + + + + + +/** + * @brief Get the sketch paths + * + * @param filelist The file containing the paths of the sketches + * @param sketch_paths The vector to store the paths + */ +void get_sketch_paths(const std::string& filelist, std::vector& sketch_paths); + + + + + + +/** + * @brief Read the sketches from the sketch paths + * + * @param sketch_paths The paths to the sketches + * @param sketches The vector to store the sketches + * @param empty_sketch_ids The vector to store the ids of empty sketches + * @param num_threads The number of threads to use + */ void read_sketches(std::vector& sketch_paths, std::vector>& sketches, std::vector& empty_sketch_ids, const uint num_threads); + + + + +/** + * @brief Show the empty sketches + * + * @param empty_sketch_ids The ids of the empty sketches + */ void show_empty_sketches(const std::vector&); + + +/** + * @brief Compute the intersection matrix + * + * @param sketches_query The query sketches + * @param sketches_ref The reference (target) sketches + * @param hash_index_ref The index of the reference (target) sketches + * @param out_dir The output directory to store the results + * @param similars The vector to store the similar sketches + * @param containment_threshold The containment threshold + * @param num_passes The number of passes to use + * @param num_threads The number of threads to use + */ void compute_intersection_matrix(const std::vector>& sketches_query, const std::vector>& sketches_ref, const std::unordered_map>& hash_index_ref, From 0706786675eb92cb8f465ec054b56ece9b1fd910 Mon Sep 17 00:00:00 2001 From: Mahmudur Date: Thu, 7 Nov 2024 14:10:22 -0500 Subject: [PATCH 22/35] add documentation --- html/bc_s.png | Bin 0 -> 676 bytes html/bc_sd.png | Bin 0 -> 635 bytes html/clipboard.js | 61 + html/closed.png | Bin 0 -> 132 bytes html/cookie.js | 58 + .../dir_68267d1309a1af8e8297ef4c3efbcdba.html | 108 + .../dir_dfdbda394c3f7a3aa55229f33a559c41.html | 108 + html/doc.svg | 12 + html/docd.svg | 12 + html/doxygen.css | 2244 +++++++++++++++ html/doxygen.svg | 28 + html/doxygen_crawl.html | 22 + html/dynsections.js | 198 ++ html/files.html | 105 + html/folderclosed.svg | 11 + html/folderclosedd.svg | 11 + html/folderopen.svg | 17 + html/folderopend.svg | 12 + html/index.html | 99 + html/jquery.js | 34 + html/menu.js | 134 + html/menudata.js | 28 + html/minus.svg | 8 + html/minusd.svg | 8 + html/nav_f.png | Bin 0 -> 153 bytes html/nav_fd.png | Bin 0 -> 169 bytes html/nav_g.png | Bin 0 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+--page-foreground-color: #C9D1D9; +--page-link-color: #90A5CE; +--page-visited-link-color: #A3B4D7; + +/* index */ +--index-odd-item-bg-color: #0B101A; +--index-even-item-bg-color: black; +--index-header-color: #C4CFE5; +--index-separator-color: #334975; + +/* header */ +--header-background-color: #070B11; +--header-separator-color: #141C2E; +--header-gradient-image: url('nav_hd.png'); +--group-header-separator-color: #283A5D; +--group-header-color: #90A5CE; +--inherit-header-color: #A0A0A0; + +--footer-foreground-color: #5B7AB7; +--footer-logo-width: 60px; +--citation-label-color: #90A5CE; +--glow-color: cyan; + +--title-background-color: #090D16; +--title-separator-color: #354C79; +--directory-separator-color: #283A5D; +--separator-color: #283A5D; + +--blockquote-background-color: #101826; +--blockquote-border-color: #283A5D; + +--scrollbar-thumb-color: #283A5D; +--scrollbar-background-color: #070B11; + +--icon-background-color: #334975; +--icon-foreground-color: #C4CFE5; +--icon-doc-image: url('docd.svg'); +--icon-folder-open-image: url('folderopend.svg'); +--icon-folder-closed-image: url('folderclosedd.svg'); + +/* brief member declaration list */ +--memdecl-background-color: #0B101A; +--memdecl-separator-color: #2C3F65; +--memdecl-foreground-color: #BBB; +--memdecl-template-color: #7C95C6; + +/* detailed member list */ +--memdef-border-color: #233250; +--memdef-title-background-color: #1B2840; +--memdef-title-gradient-image: url('nav_fd.png'); +--memdef-proto-background-color: #19243A; +--memdef-proto-text-color: #9DB0D4; +--memdef-proto-text-shadow: 0px 1px 1px rgba(0, 0, 0, 0.9); +--memdef-doc-background-color: black; +--memdef-param-name-color: #D28757; +--memdef-template-color: #7C95C6; + +/* tables */ +--table-cell-border-color: #283A5D; +--table-header-background-color: #283A5D; +--table-header-foreground-color: #C4CFE5; + +/* labels */ +--label-background-color: #354C7B; +--label-left-top-border-color: #4665A2; +--label-right-bottom-border-color: #283A5D; +--label-foreground-color: #CCCCCC; + +/** navigation bar/tree/menu */ +--nav-background-color: #101826; +--nav-foreground-color: #364D7C; +--nav-gradient-image: url('tab_bd.png'); +--nav-gradient-hover-image: url('tab_hd.png'); +--nav-gradient-active-image: url('tab_ad.png'); +--nav-gradient-active-image-parent: url("../tab_ad.png"); +--nav-separator-image: url('tab_sd.png'); +--nav-breadcrumb-image: url('bc_sd.png'); +--nav-breadcrumb-border-color: #2A3D61; +--nav-splitbar-image: url('splitbard.png'); +--nav-font-size-level1: 13px; +--nav-font-size-level2: 10px; +--nav-font-size-level3: 9px; +--nav-text-normal-color: #B6C4DF; +--nav-text-hover-color: #DCE2EF; +--nav-text-active-color: #DCE2EF; +--nav-text-normal-shadow: 0px 1px 1px black; +--nav-text-hover-shadow: 0px 1px 1px rgba(0, 0, 0, 1.0); +--nav-text-active-shadow: 0px 1px 1px rgba(0, 0, 0, 1.0); +--nav-menu-button-color: #B6C4DF; +--nav-menu-background-color: #05070C; +--nav-menu-foreground-color: #BBBBBB; +--nav-menu-toggle-color: rgba(255, 255, 255, 0.2); +--nav-arrow-color: #334975; +--nav-arrow-selected-color: #90A5CE; + +/* table of contents */ +--toc-background-color: #151E30; +--toc-border-color: #202E4A; +--toc-header-color: #A3B4D7; +--toc-down-arrow-image: url("data:image/svg+xml;utf8,&%238595;"); + +/** search field */ +--search-background-color: black; +--search-foreground-color: #C5C5C5; +--search-magnification-image: url('mag_d.svg'); +--search-magnification-select-image: url('mag_seld.svg'); +--search-active-color: #C5C5C5; +--search-filter-background-color: #101826; +--search-filter-foreground-color: #90A5CE; +--search-filter-border-color: #7C95C6; +--search-filter-highlight-text-color: #BCC9E2; +--search-filter-highlight-bg-color: #283A5D; +--search-results-background-color: #101826; +--search-results-foreground-color: #90A5CE; +--search-results-border-color: #7C95C6; +--search-box-shadow: inset 0.5px 0.5px 3px 0px #2F436C; + +/** code fragments */ +--code-keyword-color: #CC99CD; +--code-type-keyword-color: #AB99CD; +--code-flow-keyword-color: #E08000; +--code-comment-color: #717790; +--code-preprocessor-color: #65CABE; +--code-string-literal-color: #7EC699; +--code-char-literal-color: #00E0F0; +--code-xml-cdata-color: #C9D1D9; +--code-vhdl-digit-color: #FF00FF; +--code-vhdl-char-color: #C0C0C0; +--code-vhdl-keyword-color: #CF53C9; +--code-vhdl-logic-color: #FF0000; +--code-link-color: #79C0FF; +--code-external-link-color: #79C0FF; +--fragment-foreground-color: #C9D1D9; +--fragment-background-color: #090D16; +--fragment-border-color: #30363D; +--fragment-lineno-border-color: #30363D; +--fragment-lineno-background-color: black; +--fragment-lineno-foreground-color: #6E7681; +--fragment-lineno-link-fg-color: #6E7681; +--fragment-lineno-link-bg-color: #303030; +--fragment-lineno-link-hover-fg-color: #8E96A1; +--fragment-lineno-link-hover-bg-color: #505050; +--fragment-copy-ok-color: #0EA80E; +--tooltip-foreground-color: #C9D1D9; +--tooltip-background-color: #202020; +--tooltip-border-color: #C9D1D9; +--tooltip-doc-color: #D9E1E9; +--tooltip-declaration-color: #20C348; +--tooltip-link-color: #79C0FF; +--tooltip-shadow: none; +--fold-line-color: #808080; +--fold-minus-image: url('minusd.svg'); +--fold-plus-image: url('plusd.svg'); +--fold-minus-image-relpath: url('../../minusd.svg'); +--fold-plus-image-relpath: url('../../plusd.svg'); + +/** font-family */ +--font-family-normal: Roboto,sans-serif; +--font-family-monospace: 'JetBrains Mono',Consolas,Monaco,'Andale Mono','Ubuntu Mono',monospace,fixed; +--font-family-nav: 'Lucida Grande',Geneva,Helvetica,Arial,sans-serif; +--font-family-title: Tahoma,Arial,sans-serif; +--font-family-toc: Verdana,'DejaVu Sans',Geneva,sans-serif; +--font-family-search: Arial,Verdana,sans-serif; +--font-family-icon: Arial,Helvetica; +--font-family-tooltip: Roboto,sans-serif; + +/** special sections */ +--warning-color-bg: #2e1917; +--warning-color-hl: #ad2617; +--warning-color-text: #f5b1aa; +--note-color-bg: #3b2e04; +--note-color-hl: #f1b602; +--note-color-text: #ceb670; +--todo-color-bg: #163750; +--todo-color-hl: #1982D2; +--todo-color-text: #dcf0fa; +--test-color-bg: #121258; +--test-color-hl: #4242cf; +--test-color-text: #c0c0da; +--deprecated-color-bg: #2e323b; +--deprecated-color-hl: #738396; +--deprecated-color-text: #abb0bd; +--bug-color-bg: #2a2536; +--bug-color-hl: #7661b3; +--bug-color-text: #ae9ed6; +--invariant-color-bg: #303a35; +--invariant-color-hl: #76ce96; +--invariant-color-text: #cceed5; +}} +body { + background-color: var(--page-background-color); + color: var(--page-foreground-color); +} + +body, table, div, p, dl { + font-weight: 400; + font-size: 14px; + font-family: var(--font-family-normal); + line-height: 22px; +} + +/* @group Heading Levels */ + +.title { + font-family: var(--font-family-normal); + line-height: 28px; + font-size: 150%; + font-weight: bold; + margin: 10px 2px; +} + +h1.groupheader { + font-size: 150%; +} + +h2.groupheader { + border-bottom: 1px solid var(--group-header-separator-color); + color: var(--group-header-color); + font-size: 150%; + font-weight: normal; + margin-top: 1.75em; + padding-top: 8px; + padding-bottom: 4px; + width: 100%; +} + +h3.groupheader { + font-size: 100%; +} + +h1, h2, h3, h4, h5, h6 { + -webkit-transition: text-shadow 0.5s linear; + -moz-transition: text-shadow 0.5s linear; + -ms-transition: text-shadow 0.5s linear; + -o-transition: text-shadow 0.5s linear; + transition: text-shadow 0.5s linear; + margin-right: 15px; +} + +h1.glow, h2.glow, h3.glow, h4.glow, h5.glow, h6.glow { + text-shadow: 0 0 15px var(--glow-color); +} + +dt { + font-weight: bold; +} + +p.startli, p.startdd { + margin-top: 2px; +} + +th p.starttd, th p.intertd, th p.endtd { + font-size: 100%; + font-weight: 700; +} + +p.starttd { + margin-top: 0px; +} + +p.endli { + margin-bottom: 0px; +} + +p.enddd { + margin-bottom: 4px; +} + +p.endtd { + margin-bottom: 2px; +} + +p.interli { +} + +p.interdd { +} + +p.intertd { +} + +/* @end */ + +caption { + font-weight: bold; +} + +span.legend { + font-size: 70%; + text-align: center; +} + +h3.version { + font-size: 90%; + text-align: center; +} + +div.navtab { + padding-right: 15px; + text-align: right; + line-height: 110%; +} + +div.navtab table { + border-spacing: 0; +} + +td.navtab { + padding-right: 6px; + padding-left: 6px; +} + +td.navtabHL { + background-image: var(--nav-gradient-active-image); + background-repeat:repeat-x; + padding-right: 6px; + padding-left: 6px; +} + +td.navtabHL a, td.navtabHL a:visited { + color: var(--nav-text-hover-color); + text-shadow: var(--nav-text-hover-shadow); +} + +a.navtab { + font-weight: bold; +} + +div.qindex{ + text-align: center; + width: 100%; + line-height: 140%; + font-size: 130%; + color: var(--index-separator-color); +} + +#main-menu a:focus { + outline: auto; + z-index: 10; + position: relative; +} + +dt.alphachar{ + font-size: 180%; + font-weight: bold; +} + +.alphachar a{ + color: var(--index-header-color); +} + +.alphachar a:hover, .alphachar a:visited{ + text-decoration: none; +} + +.classindex dl { + padding: 25px; + column-count:1 +} + +.classindex dd { + display:inline-block; + margin-left: 50px; + width: 90%; + line-height: 1.15em; +} + +.classindex dl.even { + background-color: var(--index-even-item-bg-color); +} + +.classindex dl.odd { + background-color: var(--index-odd-item-bg-color); +} + +@media(min-width: 1120px) { + .classindex dl { + column-count:2 + } +} + +@media(min-width: 1320px) { + .classindex dl { + column-count:3 + } +} + + +/* @group Link Styling */ + +a { + color: var(--page-link-color); + font-weight: normal; + text-decoration: none; +} + +.contents a:visited { + color: var(--page-visited-link-color); +} + +a:hover { + text-decoration: none; + background: linear-gradient(to bottom, transparent 0,transparent calc(100% - 1px), currentColor 100%); +} + +a:hover > span.arrow { + text-decoration: none; + background : var(--nav-background-color); +} + +a.el { + font-weight: bold; +} + +a.elRef { +} + +a.code, a.code:visited, a.line, a.line:visited { + color: var(--code-link-color); +} + +a.codeRef, a.codeRef:visited, a.lineRef, a.lineRef:visited { + color: var(--code-external-link-color); +} + +a.code.hl_class { /* style for links to class names in code snippets */ } +a.code.hl_struct { /* style for links to struct names in code snippets */ } +a.code.hl_union { /* style for links to union names in code snippets */ } +a.code.hl_interface { /* style for links to interface names in code snippets */ } +a.code.hl_protocol { /* style for links to protocol names in code snippets */ } +a.code.hl_category { /* style for links to category names in code snippets */ } +a.code.hl_exception { /* style for links to exception names in code snippets */ } +a.code.hl_service { /* style for links to service names in code snippets */ } +a.code.hl_singleton { /* style for links to singleton names in code snippets */ } +a.code.hl_concept { /* style for links to concept names in code snippets */ } +a.code.hl_namespace { /* style for links to namespace names in code snippets */ } +a.code.hl_package { /* style for links to package names in code snippets */ } +a.code.hl_define { /* style for links to macro names in code snippets */ } +a.code.hl_function { /* style for links to function names in code snippets */ } +a.code.hl_variable { /* style for links to variable names in code snippets */ } +a.code.hl_typedef { /* style for links to typedef names in code snippets */ } +a.code.hl_enumvalue { /* style for links to enum value names in code snippets */ } +a.code.hl_enumeration { /* style for links to enumeration names in code snippets */ } +a.code.hl_signal { /* style for links to Qt signal names in code snippets */ } +a.code.hl_slot { /* style for links to Qt slot names in code snippets */ } +a.code.hl_friend { /* style for links to friend names in code snippets */ } +a.code.hl_dcop { /* style for links to KDE3 DCOP names in code snippets */ } +a.code.hl_property { /* style for links to property names in code snippets */ } +a.code.hl_event { /* style for links to event names in code snippets */ } +a.code.hl_sequence { /* style for links to sequence names in code snippets */ } +a.code.hl_dictionary { /* style for links to dictionary names in code snippets */ } + +/* @end */ + +dl.el { + margin-left: -1cm; +} + +ul.check { + list-style:none; + text-indent: -16px; + padding-left: 38px; +} +li.unchecked:before { + content: "\2610\A0"; +} +li.checked:before { + content: "\2611\A0"; +} + +ol { + text-indent: 0px; +} + +ul { + text-indent: 0px; + overflow: visible; +} + +ul.multicol { + -moz-column-gap: 1em; + -webkit-column-gap: 1em; + column-gap: 1em; + -moz-column-count: 3; + -webkit-column-count: 3; + column-count: 3; + list-style-type: none; +} + +#side-nav ul { + overflow: visible; /* reset ul rule for scroll bar in GENERATE_TREEVIEW window */ +} + +#main-nav ul { + overflow: visible; /* reset ul rule for the navigation bar drop down lists */ +} + +.fragment { + text-align: left; + direction: ltr; + overflow-x: auto; + overflow-y: hidden; + position: relative; + min-height: 12px; + margin: 10px 0px; + padding: 10px 10px; + border: 1px solid var(--fragment-border-color); + border-radius: 4px; + background-color: var(--fragment-background-color); + color: var(--fragment-foreground-color); +} + +pre.fragment { + word-wrap: break-word; + font-size: 10pt; + line-height: 125%; + font-family: var(--font-family-monospace); +} + +.clipboard { + width: 24px; + height: 24px; + right: 5px; + top: 5px; + opacity: 0; + position: absolute; + display: inline; + overflow: auto; + fill: var(--fragment-foreground-color); + justify-content: center; + align-items: center; + cursor: pointer; +} + +.clipboard.success { + border: 1px solid var(--fragment-foreground-color); + border-radius: 4px; +} + +.fragment:hover .clipboard, .clipboard.success { + opacity: .28; +} + +.clipboard:hover, .clipboard.success { + opacity: 1 !important; +} + +.clipboard:active:not([class~=success]) svg { + transform: scale(.91); +} + +.clipboard.success svg { + fill: var(--fragment-copy-ok-color); +} + +.clipboard.success { + border-color: var(--fragment-copy-ok-color); +} + +div.line { + font-family: var(--font-family-monospace); + font-size: 13px; + min-height: 13px; + line-height: 1.2; + text-wrap: unrestricted; + white-space: -moz-pre-wrap; /* Moz */ + white-space: -pre-wrap; /* Opera 4-6 */ + white-space: -o-pre-wrap; /* Opera 7 */ + white-space: pre-wrap; /* CSS3 */ + word-wrap: break-word; /* IE 5.5+ */ + text-indent: -53px; + padding-left: 53px; + padding-bottom: 0px; + margin: 0px; + -webkit-transition-property: background-color, box-shadow; + -webkit-transition-duration: 0.5s; + -moz-transition-property: background-color, box-shadow; + -moz-transition-duration: 0.5s; + -ms-transition-property: background-color, box-shadow; + -ms-transition-duration: 0.5s; + -o-transition-property: background-color, box-shadow; + -o-transition-duration: 0.5s; + transition-property: background-color, box-shadow; + transition-duration: 0.5s; +} + +div.line:after { + content:"\000A"; + white-space: pre; +} + +div.line.glow { + background-color: var(--glow-color); + box-shadow: 0 0 10px var(--glow-color); +} + +span.fold { + margin-left: 5px; + margin-right: 1px; + margin-top: 0px; + margin-bottom: 0px; + padding: 0px; + display: inline-block; + width: 12px; + height: 12px; + background-repeat:no-repeat; + background-position:center; +} + +span.lineno { + padding-right: 4px; + margin-right: 9px; + text-align: right; + border-right: 2px solid var(--fragment-lineno-border-color); + color: var(--fragment-lineno-foreground-color); + background-color: var(--fragment-lineno-background-color); + white-space: pre; +} +span.lineno a, span.lineno a:visited { + color: var(--fragment-lineno-link-fg-color); + background-color: var(--fragment-lineno-link-bg-color); +} + +span.lineno a:hover { + color: var(--fragment-lineno-link-hover-fg-color); + background-color: var(--fragment-lineno-link-hover-bg-color); +} + +.lineno { + -webkit-touch-callout: none; + -webkit-user-select: none; + -khtml-user-select: none; + -moz-user-select: none; + -ms-user-select: none; + user-select: none; +} + +div.classindex ul { + list-style: none; + padding-left: 0; +} + +div.classindex span.ai { + display: inline-block; +} + +div.groupHeader { + margin-left: 16px; + margin-top: 12px; + font-weight: bold; +} + +div.groupText { + margin-left: 16px; + font-style: italic; +} + +body { + color: var(--page-foreground-color); + margin: 0; +} + +div.contents { + margin-top: 10px; + margin-left: 12px; + margin-right: 8px; +} + +p.formulaDsp { + text-align: center; +} + +img.dark-mode-visible { + display: none; +} +img.light-mode-visible { + display: none; +} + +img.formulaInl, img.inline { + vertical-align: middle; +} + +div.center { + text-align: center; + margin-top: 0px; + margin-bottom: 0px; + padding: 0px; +} + +div.center img { + border: 0px; +} + +address.footer { + text-align: right; + padding-right: 12px; +} + +img.footer { + border: 0px; + vertical-align: middle; + width: var(--footer-logo-width); +} + +.compoundTemplParams { + color: var(--memdecl-template-color); + font-size: 80%; + line-height: 120%; +} + +/* @group Code Colorization */ + +span.keyword { + color: var(--code-keyword-color); +} + +span.keywordtype { + color: var(--code-type-keyword-color); +} + +span.keywordflow { + color: var(--code-flow-keyword-color); +} + +span.comment { + color: var(--code-comment-color); +} + +span.preprocessor { + color: var(--code-preprocessor-color); +} + +span.stringliteral { + color: var(--code-string-literal-color); +} + +span.charliteral { + color: var(--code-char-literal-color); +} + +span.xmlcdata { + color: var(--code-xml-cdata-color); +} + +span.vhdldigit { + color: var(--code-vhdl-digit-color); +} + +span.vhdlchar { + color: var(--code-vhdl-char-color); +} + +span.vhdlkeyword { + color: var(--code-vhdl-keyword-color); +} + +span.vhdllogic { + color: var(--code-vhdl-logic-color); +} + +blockquote { + background-color: var(--blockquote-background-color); + border-left: 2px solid var(--blockquote-border-color); + margin: 0 24px 0 4px; + padding: 0 12px 0 16px; +} + +/* @end */ + +td.tiny { + font-size: 75%; +} + +.dirtab { + padding: 4px; + border-collapse: collapse; + border: 1px solid var(--table-cell-border-color); +} + +th.dirtab { + background-color: var(--table-header-background-color); + color: var(--table-header-foreground-color); + font-weight: bold; +} + +hr { + height: 0px; + border: none; + border-top: 1px solid var(--separator-color); +} + +hr.footer { + height: 1px; +} + +/* @group Member Descriptions */ + +table.memberdecls { + border-spacing: 0px; + padding: 0px; +} + +.memberdecls td, .fieldtable tr { + -webkit-transition-property: background-color, box-shadow; + -webkit-transition-duration: 0.5s; + -moz-transition-property: background-color, box-shadow; + -moz-transition-duration: 0.5s; + -ms-transition-property: background-color, box-shadow; + -ms-transition-duration: 0.5s; + -o-transition-property: background-color, box-shadow; + -o-transition-duration: 0.5s; + transition-property: background-color, box-shadow; + transition-duration: 0.5s; +} + +.memberdecls td.glow, .fieldtable tr.glow { + background-color: var(--glow-color); + box-shadow: 0 0 15px var(--glow-color); +} + +.mdescLeft, .mdescRight, +.memItemLeft, .memItemRight, +.memTemplItemLeft, .memTemplItemRight, .memTemplParams { + background-color: var(--memdecl-background-color); + border: none; + margin: 4px; + padding: 1px 0 0 8px; +} + +.mdescLeft, .mdescRight { + padding: 0px 8px 4px 8px; + color: var(--memdecl-foreground-color); +} + +.memSeparator { + border-bottom: 1px solid var(--memdecl-separator-color); + line-height: 1px; + margin: 0px; + padding: 0px; +} + +.memItemLeft, .memTemplItemLeft { + white-space: nowrap; +} + +.memItemRight, .memTemplItemRight { + width: 100%; +} + +.memTemplParams { + color: var(--memdecl-template-color); + white-space: nowrap; + font-size: 80%; +} + +/* @end */ + +/* @group Member Details */ + +/* Styles for detailed member documentation */ + +.memtitle { + padding: 8px; + border-top: 1px solid var(--memdef-border-color); + border-left: 1px solid var(--memdef-border-color); + border-right: 1px solid var(--memdef-border-color); + border-top-right-radius: 4px; + border-top-left-radius: 4px; + margin-bottom: -1px; + background-image: var(--memdef-title-gradient-image); + background-repeat: repeat-x; + background-color: var(--memdef-title-background-color); + line-height: 1.25; + font-weight: 300; + float:left; +} + +.permalink +{ + font-size: 65%; + display: inline-block; + vertical-align: middle; +} + +.memtemplate { + font-size: 80%; + color: var(--memdef-template-color); + font-weight: normal; + margin-left: 9px; +} + +.mempage { + width: 100%; +} + +.memitem { + padding: 0; + margin-bottom: 10px; + margin-right: 5px; + -webkit-transition: box-shadow 0.5s linear; + -moz-transition: box-shadow 0.5s linear; + -ms-transition: box-shadow 0.5s linear; + -o-transition: box-shadow 0.5s linear; + transition: box-shadow 0.5s linear; + display: table !important; + width: 100%; +} + +.memitem.glow { + box-shadow: 0 0 15px var(--glow-color); +} + +.memname { + font-weight: 400; + margin-left: 6px; +} + +.memname td { + vertical-align: bottom; +} + +.memproto, dl.reflist dt { + border-top: 1px solid var(--memdef-border-color); + border-left: 1px solid var(--memdef-border-color); + border-right: 1px solid var(--memdef-border-color); + padding: 6px 0px 6px 0px; + color: var(--memdef-proto-text-color); + font-weight: bold; + text-shadow: var(--memdef-proto-text-shadow); + background-color: var(--memdef-proto-background-color); + box-shadow: 5px 5px 5px rgba(0, 0, 0, 0.15); + border-top-right-radius: 4px; +} + +.overload { + font-family: var(--font-family-monospace); + font-size: 65%; +} + +.memdoc, dl.reflist dd { + border-bottom: 1px solid var(--memdef-border-color); + border-left: 1px solid var(--memdef-border-color); + border-right: 1px solid var(--memdef-border-color); + padding: 6px 10px 2px 10px; + border-top-width: 0; + background-image:url('nav_g.png'); + background-repeat:repeat-x; + background-color: var(--memdef-doc-background-color); + /* opera specific markup */ + border-bottom-left-radius: 4px; + border-bottom-right-radius: 4px; + box-shadow: 5px 5px 5px rgba(0, 0, 0, 0.15); + /* firefox specific markup */ + -moz-border-radius-bottomleft: 4px; + -moz-border-radius-bottomright: 4px; + -moz-box-shadow: rgba(0, 0, 0, 0.15) 5px 5px 5px; + /* webkit specific markup */ + -webkit-border-bottom-left-radius: 4px; + -webkit-border-bottom-right-radius: 4px; + -webkit-box-shadow: 5px 5px 5px rgba(0, 0, 0, 0.15); +} + +dl.reflist dt { + padding: 5px; +} + +dl.reflist dd { + margin: 0px 0px 10px 0px; + padding: 5px; +} + +.paramkey { + text-align: right; +} + +.paramtype { + white-space: nowrap; + padding: 0px; + padding-bottom: 1px; +} + +.paramname { + white-space: nowrap; + padding: 0px; + padding-bottom: 1px; + margin-left: 2px; +} + +.paramname em { + color: var(--memdef-param-name-color); + font-style: normal; + margin-right: 1px; +} + +.paramname .paramdefval { + font-family: var(--font-family-monospace); +} + +.params, .retval, .exception, .tparams { + margin-left: 0px; + padding-left: 0px; +} + +.params .paramname, .retval .paramname, .tparams .paramname, .exception .paramname { + font-weight: bold; + vertical-align: top; +} + +.params .paramtype, .tparams .paramtype { + font-style: italic; + vertical-align: top; +} + +.params .paramdir, .tparams .paramdir { + font-family: var(--font-family-monospace); + vertical-align: top; +} + +table.mlabels { + border-spacing: 0px; +} + +td.mlabels-left { + width: 100%; + padding: 0px; +} + +td.mlabels-right { + vertical-align: bottom; + padding: 0px; + white-space: nowrap; +} + +span.mlabels { + margin-left: 8px; +} + +span.mlabel { + background-color: var(--label-background-color); + border-top:1px solid var(--label-left-top-border-color); + border-left:1px solid var(--label-left-top-border-color); + border-right:1px solid var(--label-right-bottom-border-color); + border-bottom:1px solid var(--label-right-bottom-border-color); + text-shadow: none; + color: var(--label-foreground-color); + margin-right: 4px; + padding: 2px 3px; + border-radius: 3px; + font-size: 7pt; + white-space: nowrap; + vertical-align: middle; +} + + + +/* @end */ + +/* these are for tree view inside a (index) page */ + +div.directory { + margin: 10px 0px; + border-top: 1px solid var(--directory-separator-color); + border-bottom: 1px solid var(--directory-separator-color); + width: 100%; +} + +.directory table { + border-collapse:collapse; +} + +.directory td { + margin: 0px; + padding: 0px; + vertical-align: top; +} + +.directory td.entry { + white-space: nowrap; + padding-right: 6px; + padding-top: 3px; +} + +.directory td.entry a { + outline:none; +} + +.directory td.entry a img { + border: none; +} + +.directory td.desc { + width: 100%; + padding-left: 6px; + padding-right: 6px; + padding-top: 3px; + border-left: 1px solid rgba(0,0,0,0.05); +} + +.directory tr.odd { + padding-left: 6px; + background-color: var(--index-odd-item-bg-color); +} + +.directory tr.even { + padding-left: 6px; + background-color: var(--index-even-item-bg-color); +} + +.directory img { + vertical-align: -30%; +} + +.directory .levels { + white-space: nowrap; + width: 100%; + text-align: right; + font-size: 9pt; +} + +.directory .levels span { + cursor: pointer; + padding-left: 2px; + padding-right: 2px; + color: var(--page-link-color); +} + +.arrow { + color: var(--nav-arrow-color); + -webkit-user-select: none; + -khtml-user-select: none; + -moz-user-select: none; + -ms-user-select: none; + user-select: none; + cursor: pointer; + font-size: 80%; + display: inline-block; + width: 16px; + height: 22px; +} + +.icon { + font-family: var(--font-family-icon); + line-height: normal; + font-weight: bold; + font-size: 12px; + height: 14px; + width: 16px; + display: inline-block; + background-color: var(--icon-background-color); + color: var(--icon-foreground-color); + text-align: center; + border-radius: 4px; + margin-left: 2px; + margin-right: 2px; +} + +.icona { + width: 24px; + height: 22px; + display: inline-block; +} + +.iconfopen { + width: 24px; + height: 18px; + margin-bottom: 4px; + background-image:var(--icon-folder-open-image); + background-repeat: repeat-y; + vertical-align:top; + display: inline-block; +} + +.iconfclosed { + width: 24px; + height: 18px; + margin-bottom: 4px; + background-image:var(--icon-folder-closed-image); + background-repeat: repeat-y; + vertical-align:top; + display: inline-block; +} + +.icondoc { + width: 24px; + height: 18px; + margin-bottom: 4px; + background-image:var(--icon-doc-image); + background-position: 0px -4px; + background-repeat: repeat-y; + vertical-align:top; + display: inline-block; +} + +/* @end */ + +div.dynheader { + margin-top: 8px; + -webkit-touch-callout: none; + -webkit-user-select: none; + -khtml-user-select: none; + -moz-user-select: none; + -ms-user-select: none; + user-select: none; +} + +address { + font-style: normal; + color: var(--footer-foreground-color); +} + +table.doxtable caption { + caption-side: top; +} + +table.doxtable { + border-collapse:collapse; + margin-top: 4px; + margin-bottom: 4px; +} + +table.doxtable td, table.doxtable th { + border: 1px solid var(--table-cell-border-color); + padding: 3px 7px 2px; +} + +table.doxtable th { + background-color: var(--table-header-background-color); + color: var(--table-header-foreground-color); + font-size: 110%; + padding-bottom: 4px; + padding-top: 5px; +} + +table.fieldtable { + margin-bottom: 10px; + border: 1px solid var(--memdef-border-color); + border-spacing: 0px; + border-radius: 4px; + box-shadow: 2px 2px 2px rgba(0, 0, 0, 0.15); +} + +.fieldtable td, .fieldtable th { + padding: 3px 7px 2px; +} + +.fieldtable td.fieldtype, .fieldtable td.fieldname { + white-space: nowrap; + border-right: 1px solid var(--memdef-border-color); + border-bottom: 1px solid var(--memdef-border-color); + vertical-align: top; +} + +.fieldtable td.fieldname { + padding-top: 3px; +} + +.fieldtable td.fielddoc { + border-bottom: 1px solid var(--memdef-border-color); +} + +.fieldtable td.fielddoc p:first-child { + margin-top: 0px; +} + +.fieldtable td.fielddoc p:last-child { + margin-bottom: 2px; +} + +.fieldtable tr:last-child td { + border-bottom: none; +} + +.fieldtable th { + background-image: var(--memdef-title-gradient-image); + background-repeat:repeat-x; + background-color: var(--memdef-title-background-color); + font-size: 90%; + color: var(--memdef-proto-text-color); + padding-bottom: 4px; + padding-top: 5px; + text-align:left; + font-weight: 400; + border-top-left-radius: 4px; + border-top-right-radius: 4px; + border-bottom: 1px solid var(--memdef-border-color); +} + + +.tabsearch { + top: 0px; + left: 10px; + height: 36px; + background-image: var(--nav-gradient-image); + z-index: 101; + overflow: hidden; + font-size: 13px; +} + +.navpath ul +{ + font-size: 11px; + background-image: var(--nav-gradient-image); + background-repeat:repeat-x; + background-position: 0 -5px; + height:30px; + line-height:30px; + color:var(--nav-text-normal-color); + border:solid 1px var(--nav-breadcrumb-border-color); + overflow:hidden; + margin:0px; + padding:0px; +} + +.navpath li +{ + list-style-type:none; + float:left; + padding-left:10px; + padding-right:15px; + background-image:var(--nav-breadcrumb-image); + background-repeat:no-repeat; + background-position:right; + color: var(--nav-foreground-color); +} + +.navpath li.navelem a +{ + height:32px; + display:block; + outline: none; + color: var(--nav-text-normal-color); + font-family: var(--font-family-nav); + text-shadow: var(--nav-text-normal-shadow); + text-decoration: none; +} + +.navpath li.navelem a:hover +{ + color: var(--nav-text-hover-color); + text-shadow: var(--nav-text-hover-shadow); +} + +.navpath li.footer +{ + list-style-type:none; + float:right; + padding-left:10px; + padding-right:15px; + background-image:none; + background-repeat:no-repeat; + background-position:right; + color: var(--footer-foreground-color); + font-size: 8pt; +} + + +div.summary +{ + float: right; + font-size: 8pt; + padding-right: 5px; + width: 50%; + text-align: right; +} + +div.summary a +{ + white-space: nowrap; +} + +table.classindex +{ + margin: 10px; + white-space: nowrap; + margin-left: 3%; + margin-right: 3%; + width: 94%; + border: 0; + border-spacing: 0; + padding: 0; +} + +div.ingroups +{ + font-size: 8pt; + width: 50%; + text-align: left; +} + +div.ingroups a +{ + white-space: nowrap; +} + +div.header +{ + background-image: var(--header-gradient-image); + background-repeat:repeat-x; + background-color: var(--header-background-color); + margin: 0px; + border-bottom: 1px solid var(--header-separator-color); +} + +div.headertitle +{ + padding: 5px 5px 5px 10px; +} + +.PageDocRTL-title div.headertitle { + text-align: right; + direction: rtl; +} + +dl { + padding: 0 0 0 0; +} + +/* + +dl.section { + margin-left: 0px; + padding-left: 0px; +} + +dl.note { + margin-left: -7px; + padding-left: 3px; + border-left: 4px solid; + border-color: #D0C000; +} + +dl.warning, dl.attention, dl.important { + margin-left: -7px; + padding-left: 3px; + border-left: 4px solid; + border-color: #FF0000; +} + +dl.pre, dl.post, dl.invariant { + margin-left: -7px; + padding-left: 3px; + border-left: 4px solid; + border-color: #00D000; +} + +dl.deprecated { + margin-left: -7px; + padding-left: 3px; + border-left: 4px solid; + border-color: #505050; +} + +dl.todo { + margin-left: -7px; + padding-left: 3px; + border-left: 4px solid; + border-color: #00C0E0; +} + +dl.test { + margin-left: -7px; + padding-left: 3px; + border-left: 4px solid; + border-color: #3030E0; +} + +dl.bug { + margin-left: -7px; + padding-left: 3px; + border-left: 4px solid; + border-color: #C08050; +} + +*/ + +dl.bug dt a, dl.deprecated dt a, dl.todo dt a, dl.test a { + font-weight: bold !important; +} + +dl.warning, dl.attention, dl.important, dl.note, dl.deprecated, dl.bug, +dl.invariant, dl.pre, dl.post, dl.todo, dl.test, dl.remark { + padding: 10px; + margin: 10px 0px; + overflow: hidden; + margin-left: 0; + border-radius: 4px; +} + +dl.section dd { + margin-bottom: 2px; +} + +dl.warning, dl.attention, dl.important { + background: var(--warning-color-bg); + border-left: 8px solid var(--warning-color-hl); + color: var(--warning-color-text); +} + +dl.warning dt, dl.attention dt, dl.important dt { + color: var(--warning-color-hl); +} + +dl.note, dl.remark { + background: var(--note-color-bg); + border-left: 8px solid var(--note-color-hl); + color: var(--note-color-text); +} + +dl.note dt, dl.remark dt { + color: var(--note-color-hl); +} + +dl.todo { + background: var(--todo-color-bg); + border-left: 8px solid var(--todo-color-hl); + color: var(--todo-color-text); +} + +dl.todo dt { + color: var(--todo-color-hl); +} + +dl.test { + background: var(--test-color-bg); + border-left: 8px solid var(--test-color-hl); + color: var(--test-color-text); +} + +dl.test dt { + color: var(--test-color-hl); +} + +dl.bug dt a { + color: var(--bug-color-hl) !important; +} + +dl.bug { + background: var(--bug-color-bg); + border-left: 8px solid var(--bug-color-hl); + color: var(--bug-color-text); +} + +dl.bug dt a { + color: var(--bug-color-hl) !important; +} + +dl.deprecated { + background: var(--deprecated-color-bg); + border-left: 8px solid var(--deprecated-color-hl); + color: var(--deprecated-color-text); +} + +dl.deprecated dt a { + color: var(--deprecated-color-hl) !important; +} + +dl.note dd, dl.warning dd, dl.pre dd, dl.post dd, +dl.remark dd, dl.attention dd, dl.important dd, dl.invariant dd, +dl.bug dd, dl.deprecated dd, dl.todo dd, dl.test dd { + margin-inline-start: 0px; +} + +dl.invariant, dl.pre, dl.post { + background: var(--invariant-color-bg); + border-left: 8px solid var(--invariant-color-hl); + color: var(--invariant-color-text); +} + +dl.invariant dt, dl.pre dt, dl.post dt { + color: var(--invariant-color-hl); +} + + +#projectrow +{ + height: 56px; +} + +#projectlogo +{ + text-align: center; + vertical-align: bottom; + border-collapse: separate; +} + +#projectlogo img +{ + border: 0px none; +} + +#projectalign +{ + vertical-align: middle; + padding-left: 0.5em; +} + +#projectname +{ + font-size: 200%; + font-family: var(--font-family-title); + margin: 0px; + padding: 2px 0px; +} + +#projectbrief +{ + font-size: 90%; + font-family: var(--font-family-title); + margin: 0px; + padding: 0px; +} + +#projectnumber +{ + font-size: 50%; + font-family: 50% var(--font-family-title); + margin: 0px; + padding: 0px; +} + +#titlearea +{ + padding: 0px; + margin: 0px; + width: 100%; + border-bottom: 1px solid var(--title-separator-color); + background-color: var(--title-background-color); +} + +.image +{ + text-align: center; +} + +.dotgraph +{ + text-align: center; +} + +.mscgraph +{ + text-align: center; +} + +.plantumlgraph +{ + text-align: center; +} + +.diagraph +{ + text-align: center; +} + +.caption +{ + font-weight: bold; +} + +dl.citelist { + margin-bottom:50px; +} + +dl.citelist dt { + color:var(--citation-label-color); + float:left; + font-weight:bold; + margin-right:10px; + padding:5px; + text-align:right; + width:52px; +} + +dl.citelist dd { + margin:2px 0 2px 72px; + padding:5px 0; +} + +div.toc { + padding: 14px 25px; + background-color: var(--toc-background-color); + border: 1px solid var(--toc-border-color); + border-radius: 7px 7px 7px 7px; + float: right; + height: auto; + margin: 0 8px 10px 10px; + width: 200px; +} + +div.toc li { + background: var(--toc-down-arrow-image) no-repeat scroll 0 5px transparent; + font: 10px/1.2 var(--font-family-toc); + margin-top: 5px; + padding-left: 10px; + padding-top: 2px; +} + +div.toc h3 { + font: bold 12px/1.2 var(--font-family-toc); + color: var(--toc-header-color); + border-bottom: 0 none; + margin: 0; +} + +div.toc ul { + list-style: none outside none; + border: medium none; + padding: 0px; +} + +div.toc li.level1 { + margin-left: 0px; +} + +div.toc li.level2 { + margin-left: 15px; +} + +div.toc li.level3 { + margin-left: 15px; +} + +div.toc li.level4 { + margin-left: 15px; +} + +span.emoji { + /* font family used at the site: https://unicode.org/emoji/charts/full-emoji-list.html + * font-family: "Noto Color Emoji", "Apple Color Emoji", "Segoe UI Emoji", Times, Symbola, Aegyptus, Code2000, Code2001, Code2002, Musica, serif, LastResort; + */ +} + +span.obfuscator { + display: none; +} + +.inherit_header { + font-weight: bold; + color: var(--inherit-header-color); + cursor: pointer; + -webkit-touch-callout: none; + -webkit-user-select: none; + -khtml-user-select: none; + -moz-user-select: none; + -ms-user-select: none; + user-select: none; +} + +.inherit_header td { + padding: 6px 0px 2px 5px; +} + +.inherit { + display: none; +} + +tr.heading h2 { + margin-top: 12px; + margin-bottom: 4px; +} + +/* tooltip related style info */ + +.ttc { + position: absolute; + display: none; +} + +#powerTip { + cursor: default; + /*white-space: nowrap;*/ + color: var(--tooltip-foreground-color); + background-color: var(--tooltip-background-color); + border: 1px solid var(--tooltip-border-color); + border-radius: 4px 4px 4px 4px; + box-shadow: var(--tooltip-shadow); + display: none; + font-size: smaller; + max-width: 80%; + opacity: 0.9; + padding: 1ex 1em 1em; + position: absolute; + z-index: 2147483647; +} + +#powerTip div.ttdoc { + color: var(--tooltip-doc-color); + font-style: italic; +} + +#powerTip div.ttname a { + font-weight: bold; +} + +#powerTip a { + color: var(--tooltip-link-color); +} + +#powerTip div.ttname { + font-weight: bold; +} + +#powerTip div.ttdeci { + color: var(--tooltip-declaration-color); +} + +#powerTip div { + margin: 0px; + padding: 0px; + font-size: 12px; + font-family: var(--font-family-tooltip); + line-height: 16px; +} + +#powerTip:before, #powerTip:after { + content: ""; + position: absolute; + margin: 0px; +} + +#powerTip.n:after, #powerTip.n:before, +#powerTip.s:after, #powerTip.s:before, +#powerTip.w:after, #powerTip.w:before, +#powerTip.e:after, #powerTip.e:before, +#powerTip.ne:after, #powerTip.ne:before, +#powerTip.se:after, #powerTip.se:before, +#powerTip.nw:after, #powerTip.nw:before, +#powerTip.sw:after, #powerTip.sw:before { + border: solid transparent; + content: " "; + height: 0; + width: 0; + position: absolute; +} + +#powerTip.n:after, #powerTip.s:after, +#powerTip.w:after, #powerTip.e:after, +#powerTip.nw:after, #powerTip.ne:after, +#powerTip.sw:after, #powerTip.se:after { + border-color: rgba(255, 255, 255, 0); +} + +#powerTip.n:before, #powerTip.s:before, +#powerTip.w:before, #powerTip.e:before, +#powerTip.nw:before, #powerTip.ne:before, +#powerTip.sw:before, #powerTip.se:before { + border-color: rgba(128, 128, 128, 0); +} + +#powerTip.n:after, #powerTip.n:before, +#powerTip.ne:after, #powerTip.ne:before, +#powerTip.nw:after, #powerTip.nw:before { + top: 100%; +} + +#powerTip.n:after, #powerTip.ne:after, #powerTip.nw:after { + border-top-color: var(--tooltip-background-color); + border-width: 10px; + margin: 0px -10px; +} +#powerTip.n:before, #powerTip.ne:before, #powerTip.nw:before { + border-top-color: var(--tooltip-border-color); + border-width: 11px; + margin: 0px -11px; +} +#powerTip.n:after, #powerTip.n:before { + left: 50%; +} + +#powerTip.nw:after, #powerTip.nw:before { + right: 14px; +} + +#powerTip.ne:after, #powerTip.ne:before { + left: 14px; +} + +#powerTip.s:after, #powerTip.s:before, +#powerTip.se:after, #powerTip.se:before, +#powerTip.sw:after, #powerTip.sw:before { + bottom: 100%; +} + +#powerTip.s:after, #powerTip.se:after, #powerTip.sw:after { + border-bottom-color: var(--tooltip-background-color); + border-width: 10px; + margin: 0px -10px; +} + +#powerTip.s:before, #powerTip.se:before, #powerTip.sw:before { + border-bottom-color: var(--tooltip-border-color); + border-width: 11px; + margin: 0px -11px; +} + +#powerTip.s:after, #powerTip.s:before { + left: 50%; +} + +#powerTip.sw:after, #powerTip.sw:before { + right: 14px; +} + +#powerTip.se:after, #powerTip.se:before { + left: 14px; +} + +#powerTip.e:after, #powerTip.e:before { + left: 100%; +} +#powerTip.e:after { + border-left-color: var(--tooltip-border-color); + border-width: 10px; + top: 50%; + margin-top: -10px; +} +#powerTip.e:before { + border-left-color: var(--tooltip-border-color); + border-width: 11px; + top: 50%; + margin-top: -11px; +} + +#powerTip.w:after, #powerTip.w:before { + right: 100%; +} +#powerTip.w:after { + border-right-color: var(--tooltip-border-color); + border-width: 10px; + top: 50%; + margin-top: -10px; +} +#powerTip.w:before { + border-right-color: var(--tooltip-border-color); + border-width: 11px; + top: 50%; + margin-top: -11px; +} + +@media print +{ + #top { display: none; } + #side-nav { display: none; } + #nav-path { display: none; } + body { overflow:visible; } + h1, h2, h3, h4, h5, h6 { page-break-after: avoid; } + .summary { display: none; } + .memitem { page-break-inside: avoid; 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Many-vs-many sketch comparison 1 +
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Fast many-vs-many sketch comparison
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Here is a list of all documented files with brief descriptions:
+
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 ▼ src
 ▼ cpp
 utils.h
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Many-vs-many sketch comparison 1 +
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Fast many-vs-many sketch comparison
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Many-vs-many sketch comparison Documentation
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e=t.dataSM("scroll"),i=$(window).scrollTop()-t.dataSM("parent-a").offset().top-e.itemH;this.cssTransforms3d&&(i=-(parseFloat(t.css("margin-top"))-i)),$.extend(e,{upEnd:i,downEnd:i+this.getViewportHeight()-e.subH})},menuScrollStop:function(t){return this.scrollTimeout?(cancelAnimationFrame(this.scrollTimeout),this.scrollTimeout=0,t.dataSM("scroll").step=1,!0):void 0},menuScrollTouch:function(t,e){if(e=e.originalEvent,isTouchEvent(e)){var i=this.getTouchPoint(e);if(this.getClosestMenu(i.target)==t[0]){var s=t.dataSM("scroll");if(/(start|down)$/i.test(e.type))this.menuScrollStop(t)?(e.preventDefault(),this.$touchScrollingSub=t):this.$touchScrollingSub=null,this.menuScrollRefreshData(t),$.extend(s,{touchStartY:i.pageY,touchStartTime:e.timeStamp});else if(/move$/i.test(e.type)){var o=void 0!==s.touchY?s.touchY:s.touchStartY;if(void 0!==o&&o!=i.pageY){this.$touchScrollingSub=t;var a=i.pageY>o;void 0!==s.up&&s.up!=a&&$.extend(s,{touchStartY:i.pageY,touchStartTime:e.timeStamp}),$.extend(s,{up:a,touchY:i.pageY}),this.menuScroll(t,!0,Math.abs(i.pageY-o))}e.preventDefault()}else void 0!==s.touchY&&((s.momentum=15*Math.pow(Math.abs(i.pageY-s.touchStartY)/(e.timeStamp-s.touchStartTime),2))&&(this.menuScrollStop(t),this.menuScroll(t),e.preventDefault()),delete s.touchY)}}},menuShow:function(t){if((t.dataSM("beforefirstshowfired")||(t.dataSM("beforefirstshowfired",!0),this.$root.triggerHandler("beforefirstshow.smapi",t[0])!==!1))&&this.$root.triggerHandler("beforeshow.smapi",t[0])!==!1&&(t.dataSM("shown-before",!0),canAnimate&&t.stop(!0,!0),!t.is(":visible"))){var e=t.dataSM("parent-a"),i=this.isCollapsible();if((this.opts.keepHighlighted||i)&&e.addClass("highlighted"),i)t.removeClass("sm-nowrap").css({zIndex:"",width:"auto",minWidth:"",maxWidth:"",top:"",left:"",marginLeft:"",marginTop:""});else{if(t.css("z-index",this.zIndexInc=(this.zIndexInc||this.getStartZIndex())+1),(this.opts.subMenusMinWidth||this.opts.subMenusMaxWidth)&&(t.css({width:"auto",minWidth:"",maxWidth:""}).addClass("sm-nowrap"),this.opts.subMenusMinWidth&&t.css("min-width",this.opts.subMenusMinWidth),this.opts.subMenusMaxWidth)){var s=this.getWidth(t);t.css("max-width",this.opts.subMenusMaxWidth),s>this.getWidth(t)&&t.removeClass("sm-nowrap").css("width",this.opts.subMenusMaxWidth)}this.menuPosition(t)}var o=function(){t.css("overflow","")};i?canAnimate&&this.opts.collapsibleShowFunction?this.opts.collapsibleShowFunction.call(this,t,o):t.show(this.opts.collapsibleShowDuration,o):canAnimate&&this.opts.showFunction?this.opts.showFunction.call(this,t,o):t.show(this.opts.showDuration,o),e.attr("aria-expanded","true"),t.attr({"aria-expanded":"true","aria-hidden":"false"}),this.visibleSubMenus.push(t),this.$root.triggerHandler("show.smapi",t[0])}},popupHide:function(t){this.hideTimeout&&(clearTimeout(this.hideTimeout),this.hideTimeout=0);var e=this;this.hideTimeout=setTimeout(function(){e.menuHideAll()},t?1:this.opts.hideTimeout)},popupShow:function(t,e){if(!this.opts.isPopup)return alert('SmartMenus jQuery Error:\n\nIf you want to show this menu via the "popupShow" method, set the isPopup:true option.'),void 0;if(this.hideTimeout&&(clearTimeout(this.hideTimeout),this.hideTimeout=0),this.$root.dataSM("shown-before",!0),canAnimate&&this.$root.stop(!0,!0),!this.$root.is(":visible")){this.$root.css({left:t,top:e});var i=this,s=function(){i.$root.css("overflow","")};canAnimate&&this.opts.showFunction?this.opts.showFunction.call(this,this.$root,s):this.$root.show(this.opts.showDuration,s),this.visibleSubMenus[0]=this.$root}},refresh:function(){this.destroy(!0),this.init(!0)},rootKeyDown:function(t){if(this.handleEvents())switch(t.keyCode){case 27:var e=this.activatedItems[0];if(e){this.menuHideAll(),e[0].focus();var i=e.dataSM("sub");i&&this.menuHide(i)}break;case 32:var s=$(t.target);if(s.is("a")&&this.handleItemEvents(s)){var i=s.dataSM("sub");i&&!i.is(":visible")&&(this.itemClick({currentTarget:t.target}),t.preventDefault())}}},rootOut:function(t){if(this.handleEvents()&&!this.isTouchMode()&&t.target!=this.$root[0]&&(this.hideTimeout&&(clearTimeout(this.hideTimeout),this.hideTimeout=0),!this.opts.showOnClick||!this.opts.hideOnClick)){var e=this;this.hideTimeout=setTimeout(function(){e.menuHideAll()},this.opts.hideTimeout)}},rootOver:function(t){this.handleEvents()&&!this.isTouchMode()&&t.target!=this.$root[0]&&this.hideTimeout&&(clearTimeout(this.hideTimeout),this.hideTimeout=0)},winResize:function(t){if(this.handleEvents()){if(!("onorientationchange"in window)||"orientationchange"==t.type){var e=this.isCollapsible();this.wasCollapsible&&e||(this.activatedItems.length&&this.activatedItems[this.activatedItems.length-1][0].blur(),this.menuHideAll()),this.wasCollapsible=e}}else if(this.$disableOverlay){var i=this.$root.offset();this.$disableOverlay.css({top:i.top,left:i.left,width:this.$root.outerWidth(),height:this.$root.outerHeight()})}}}}),$.fn.dataSM=function(t,e){return e?this.data(t+"_smartmenus",e):this.data(t+"_smartmenus")},$.fn.removeDataSM=function(t){return this.removeData(t+"_smartmenus")},$.fn.smartmenus=function(options){if("string"==typeof options){var args=arguments,method=options;return Array.prototype.shift.call(args),this.each(function(){var t=$(this).data("smartmenus");t&&t[method]&&t[method].apply(t,args)})}return this.each(function(){var dataOpts=$(this).data("sm-options")||null;if(dataOpts)try{dataOpts=eval("("+dataOpts+")")}catch(e){dataOpts=null,alert('ERROR\n\nSmartMenus jQuery init:\nInvalid "data-sm-options" attribute value syntax.')}new $.SmartMenus(this,$.extend({},$.fn.smartmenus.defaults,options,dataOpts))})},$.fn.smartmenus.defaults={isPopup:!1,mainMenuSubOffsetX:0,mainMenuSubOffsetY:0,subMenusSubOffsetX:0,subMenusSubOffsetY:0,subMenusMinWidth:"10em",subMenusMaxWidth:"20em",subIndicators:!0,subIndicatorsPos:"append",subIndicatorsText:"",scrollStep:30,scrollAccelerate:!0,showTimeout:250,hideTimeout:500,showDuration:0,showFunction:null,hideDuration:0,hideFunction:function(t,e){t.fadeOut(200,e)},collapsibleShowDuration:0,collapsibleShowFunction:function(t,e){t.slideDown(200,e)},collapsibleHideDuration:0,collapsibleHideFunction:function(t,e){t.slideUp(200,e)},showOnClick:!1,hideOnClick:!0,noMouseOver:!1,keepInViewport:!0,keepHighlighted:!0,markCurrentItem:!1,markCurrentTree:!0,rightToLeftSubMenus:!1,bottomToTopSubMenus:!1,collapsibleBehavior:"default"},$}); \ No newline at end of file diff --git a/html/menu.js b/html/menu.js new file mode 100644 index 00000000..0fd1e990 --- /dev/null +++ b/html/menu.js @@ -0,0 +1,134 @@ +/* + @licstart The following is the entire license notice for the JavaScript code in this file. + + The MIT License (MIT) + + Copyright (C) 1997-2020 by Dimitri van Heesch + + Permission is hereby granted, free of charge, to any person obtaining a copy of this software + and associated documentation files (the "Software"), to deal in the Software without restriction, + including without limitation the rights to use, copy, modify, merge, publish, distribute, + sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is + furnished to do so, subject to the following conditions: + + The above copyright notice and this permission notice shall be included in all copies or + substantial portions of the Software. + + THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING + BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND + NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, + DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, + OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + @licend The above is the entire license notice for the JavaScript code in this file + */ +function initMenu(relPath,searchEnabled,serverSide,searchPage,search,treeview) { + function makeTree(data,relPath) { + let result=''; + if ('children' in data) { + result+='
    '; + for (let i in data.children) { + let url; + const link = data.children[i].url; + if (link.substring(0,1)=='^') { + url = link.substring(1); + } else { + url = relPath+link; + } + result+='
  • '+ + data.children[i].text+''+ + makeTree(data.children[i],relPath)+'
    • '; + } + result+='
'; + } + return result; + } + let searchBoxHtml; + if (searchEnabled) { + if (serverSide) { + searchBoxHtml='
'+ + '
'+ + '
 '+ + ''+ + '
'+ + '
'+ + '
'+ + '
'; + } else { + searchBoxHtml='
'+ + ''+ + ' '+ + ''+ + ''+ + ''+ + ''+ + ''+ + '
'; + } + } + + $('#main-nav').before('
'+ + ''+ + ''+ + '
'); + $('#main-nav').append(makeTree(menudata,relPath)); + $('#main-nav').children(':first').addClass('sm sm-dox').attr('id','main-menu'); + if (searchBoxHtml) { + $('#main-menu').append('
  • '); + } + const $mainMenuState = $('#main-menu-state'); + let prevWidth = 0; + if ($mainMenuState.length) { + const initResizableIfExists = function() { + if (typeof initResizable==='function') initResizable(treeview); + } + // animate mobile menu + $mainMenuState.change(function() { + const $menu = $('#main-menu'); + let options = { duration: 250, step: initResizableIfExists }; + if (this.checked) { + options['complete'] = () => $menu.css('display', 'block'); + $menu.hide().slideDown(options); + } else { + options['complete'] = () => $menu.css('display', 'none'); + $menu.show().slideUp(options); + } + }); + // set default menu visibility + const resetState = function() { + const $menu = $('#main-menu'); + const newWidth = $(window).outerWidth(); + if (newWidth!=prevWidth) { + if ($(window).outerWidth()<768) { + $mainMenuState.prop('checked',false); $menu.hide(); + $('#searchBoxPos1').html(searchBoxHtml); + $('#searchBoxPos2').hide(); + } else { + $menu.show(); + $('#searchBoxPos1').empty(); + $('#searchBoxPos2').html(searchBoxHtml); + $('#searchBoxPos2').show(); + } + if (typeof searchBox!=='undefined') { + searchBox.CloseResultsWindow(); + } + prevWidth = newWidth; + } + } + $(window).ready(function() { resetState(); initResizableIfExists(); }); + $(window).resize(resetState); + } + $('#main-menu').smartmenus(); +} +/* @license-end */ diff --git a/html/menudata.js b/html/menudata.js new file mode 100644 index 00000000..c63056b0 --- /dev/null +++ b/html/menudata.js @@ -0,0 +1,28 @@ +/* + @licstart The following is the entire license notice for the JavaScript code in this file. + + The MIT License (MIT) + + Copyright (C) 1997-2020 by Dimitri van Heesch + + Permission is hereby granted, free of charge, to any person obtaining a copy of this software + and associated documentation files (the "Software"), to deal in the Software without restriction, + including without limitation the rights to use, copy, modify, merge, publish, distribute, + sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is + furnished to do so, subject to the following conditions: + + The above copyright notice and this permission notice shall be included in all copies or + substantial portions of the Software. + + THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING + BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND + NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, + DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, + OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + @licend The above is the entire license notice for the JavaScript code in this file +*/ +var menudata={children:[ +{text:"Main Page",url:"index.html"}, +{text:"Files",url:"files.html",children:[ +{text:"File List",url:"files.html"}]}]} diff --git a/html/minus.svg b/html/minus.svg new file mode 100644 index 00000000..f70d0c1a --- /dev/null +++ b/html/minus.svg @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/html/minusd.svg b/html/minusd.svg new file mode 100644 index 00000000..5f8e8796 --- /dev/null +++ b/html/minusd.svg @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/html/nav_f.png b/html/nav_f.png new file mode 100644 index 0000000000000000000000000000000000000000..72a58a529ed3a9ed6aa0c51a79cf207e026deee2 GIT binary patch literal 153 zcmeAS@N?(olHy`uVBq!ia0vp^j6iI`!2~2XGqLUlQVE_ejv*C{Z|{2ZH7M}7UYxc) zn!W8uqtnIQ>_z8U literal 0 HcmV?d00001 diff --git a/html/nav_fd.png b/html/nav_fd.png new file mode 100644 index 0000000000000000000000000000000000000000..032fbdd4c54f54fa9a2e6423b94ef4b2ebdfaceb GIT binary patch literal 169 zcmeAS@N?(olHy`uVBq!ia0vp^j6iI`!2~2XGqLUlQU#tajv*C{Z|C~*H7f|XvG1G8 zt7aS*L7xwMeS}!z6R#{C5tIw-s~AJ==F^i}x3XyJseHR@yF& zerFf(Zf;Dd{+(0lDIROL@Sj-Ju2JQ8&-n%4%q?>|^bShc&lR?}7HeMo@BDl5N(aHY Uj$gdr1MOz;boFyt=akR{0D!zeaR2}S literal 0 HcmV?d00001 diff --git a/html/nav_g.png b/html/nav_g.png new file mode 100644 index 0000000000000000000000000000000000000000..2093a237a94f6c83e19ec6e5fd42f7ddabdafa81 GIT binary patch literal 95 zcmeAS@N?(olHy`uVBq!ia0vp^j6lrB!3HFm1ilyoDK$?Q$B+ufw|5PB85lU25BhtE tr?otc=hd~V+ws&_A@j8Fiv!KF$B+ufw|5=67#uj90@pIL wZ=Q8~_Ju`#59=RjDrmm`tMD@M=!-l18IR?&vFVdQ&MBb@0HFXL6W-eg#Jd_@e6*DPn)w;=|1H}Zvm9l6xXXB%>yL=NQU;mg M>FVdQ&MBb@0Bdt1Qvd(} literal 0 HcmV?d00001 diff --git a/html/navtree.css b/html/navtree.css new file mode 100644 index 00000000..69211d4a --- /dev/null +++ b/html/navtree.css @@ -0,0 +1,149 @@ +#nav-tree .children_ul { + margin:0; + padding:4px; +} + +#nav-tree ul { + list-style:none outside none; + margin:0px; + padding:0px; +} + +#nav-tree li { + white-space:nowrap; + margin:0px; + padding:0px; +} + +#nav-tree .plus { + margin:0px; +} + +#nav-tree .selected { + background-image: url('tab_a.png'); + background-repeat:repeat-x; + color: var(--nav-text-active-color); + text-shadow: var(--nav-text-active-shadow); +} + +#nav-tree .selected .arrow { + color: var(--nav-arrow-selected-color); + text-shadow: none; +} + +#nav-tree img { + margin:0px; + padding:0px; + border:0px; + vertical-align: middle; +} + +#nav-tree a { + text-decoration:none; + padding:0px; + margin:0px; +} + +#nav-tree .label { + margin:0px; + padding:0px; + font: 12px var(--font-family-nav); +} + +#nav-tree .label a { + padding:2px; +} + +#nav-tree .selected a { + text-decoration:none; + color:var(--nav-text-active-color); +} + +#nav-tree .children_ul { + margin:0px; + padding:0px; +} + +#nav-tree .item { + margin:0px; + padding:0px; +} + +#nav-tree { + padding: 0px 0px; + font-size:14px; + overflow:auto; +} + +#doc-content { + overflow:auto; + display:block; + padding:0px; + margin:0px; + -webkit-overflow-scrolling : touch; /* iOS 5+ */ +} + +#side-nav { + padding:0 6px 0 0; + margin: 0px; + display:block; + position: absolute; + left: 0px; + width: $width; + overflow : hidden; +} + +.ui-resizable .ui-resizable-handle { + display:block; +} + +.ui-resizable-e { + background-image:var(--nav-splitbar-image); + background-size:100%; + background-repeat:repeat-y; + background-attachment: scroll; + cursor:ew-resize; + height:100%; + right:0; + top:0; + width:6px; +} + +.ui-resizable-handle { + display:none; + font-size:0.1px; + position:absolute; + z-index:1; +} + +#nav-tree-contents { + margin: 6px 0px 0px 0px; +} + +#nav-tree { + background-repeat:repeat-x; + background-color: var(--nav-background-color); + -webkit-overflow-scrolling : touch; /* iOS 5+ */ +} + +#nav-sync { + position:absolute; + top:5px; + right:24px; + z-index:0; +} + +#nav-sync img { + opacity:0.3; +} + +#nav-sync img:hover { + opacity:0.9; +} + +@media print +{ + #nav-tree { display: none; } + div.ui-resizable-handle { display: none; position: relative; } +} + diff --git a/html/open.png b/html/open.png new file mode 100644 index 0000000000000000000000000000000000000000..30f75c7efe2dd0c9e956e35b69777a02751f048b GIT binary patch literal 123 zcmeAS@N?(olHy`uVBq!ia0vp^oFL4>1|%O$WD@{VPM$7~Ar*{o?;hlAFyLXmaDC0y znK1_#cQqJWPES%4Uujug^TE?jMft$}Eq^WaR~)%f)vSNs&gek&x%A9X9sM + + + + + + + + diff --git a/html/plusd.svg b/html/plusd.svg new file mode 100644 index 00000000..0c65bfe9 --- /dev/null +++ b/html/plusd.svg @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/html/resize.js b/html/resize.js new file mode 100644 index 00000000..7d8cdc7d --- /dev/null +++ b/html/resize.js @@ -0,0 +1,145 @@ +/* + @licstart The following is the entire license notice for the JavaScript code in this file. + + The MIT License (MIT) + + Copyright (C) 1997-2020 by Dimitri van Heesch + + Permission is hereby granted, free of charge, to any person obtaining a copy of this software + and associated documentation files (the "Software"), to deal in the Software without restriction, + including without limitation the rights to use, copy, modify, merge, publish, distribute, + sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is + furnished to do so, subject to the following conditions: + + The above copyright notice and this permission notice shall be included in all copies or + substantial portions of the Software. + + THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING + BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND + NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, + DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, + OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + @licend The above is the entire license notice for the JavaScript code in this file + */ + +function initResizable(treeview) { + let sidenav,navtree,content,header,footer,barWidth=6; + const RESIZE_COOKIE_NAME = ''+'width'; + + function resizeWidth() { + const sidenavWidth = $(sidenav).outerWidth(); + content.css({marginLeft:parseInt(sidenavWidth)+"px"}); + if (typeof page_layout!=='undefined' && page_layout==1) { + footer.css({marginLeft:parseInt(sidenavWidth)+"px"}); + } + Cookie.writeSetting(RESIZE_COOKIE_NAME,sidenavWidth-barWidth); + } + + function restoreWidth(navWidth) { + content.css({marginLeft:parseInt(navWidth)+barWidth+"px"}); + if (typeof page_layout!=='undefined' && page_layout==1) { + footer.css({marginLeft:parseInt(navWidth)+barWidth+"px"}); + } + sidenav.css({width:navWidth + "px"}); + } + + function resizeHeight(treeview) { + const headerHeight = header.outerHeight(); + const windowHeight = $(window).height(); + let contentHeight; + if (treeview) + { + const footerHeight = footer.outerHeight(); + let navtreeHeight,sideNavHeight; + if (typeof page_layout==='undefined' || page_layout==0) { /* DISABLE_INDEX=NO */ + contentHeight = windowHeight - headerHeight - footerHeight; + navtreeHeight = contentHeight; + sideNavHeight = contentHeight; + } else if (page_layout==1) { /* DISABLE_INDEX=YES */ + contentHeight = windowHeight - footerHeight; + navtreeHeight = windowHeight - headerHeight; + sideNavHeight = windowHeight; + } + navtree.css({height:navtreeHeight + "px"}); + sidenav.css({height:sideNavHeight + "px"}); + } + else + { + contentHeight = windowHeight - headerHeight; + } + content.css({height:contentHeight + "px"}); + if (location.hash.slice(1)) { + (document.getElementById(location.hash.slice(1))||document.body).scrollIntoView(); + } + } + + function collapseExpand() { + let newWidth; + if (sidenav.width()>0) { + newWidth=0; + } else { + const width = Cookie.readSetting(RESIZE_COOKIE_NAME,250); + newWidth = (width>250 && width<$(window).width()) ? width : 250; + } + restoreWidth(newWidth); + const sidenavWidth = $(sidenav).outerWidth(); + Cookie.writeSetting(RESIZE_COOKIE_NAME,sidenavWidth-barWidth); + } + + header = $("#top"); + content = $("#doc-content"); + footer = $("#nav-path"); + sidenav = $("#side-nav"); + if (!treeview) { +// title = $("#titlearea"); +// titleH = $(title).height(); +// let animating = false; +// content.on("scroll", function() { +// slideOpts = { duration: 200, +// step: function() { +// contentHeight = $(window).height() - header.outerHeight(); +// content.css({ height : contentHeight + "px" }); +// }, +// done: function() { animating=false; } +// }; +// if (content.scrollTop()>titleH && title.css('display')!='none' && !animating) { +// title.slideUp(slideOpts); +// animating=true; +// } else if (content.scrollTop()<=titleH && title.css('display')=='none' && !animating) { +// title.slideDown(slideOpts); +// animating=true; +// } +// }); + } else { + navtree = $("#nav-tree"); + $(".side-nav-resizable").resizable({resize: function(e, ui) { resizeWidth(); } }); + $(sidenav).resizable({ minWidth: 0 }); + } + $(window).resize(function() { resizeHeight(treeview); }); + if (treeview) + { + const device = navigator.userAgent.toLowerCase(); + const touch_device = device.match(/(iphone|ipod|ipad|android)/); + if (touch_device) { /* wider split bar for touch only devices */ + $(sidenav).css({ paddingRight:'20px' }); + $('.ui-resizable-e').css({ width:'20px' }); + $('#nav-sync').css({ right:'34px' }); + barWidth=20; + } + const width = Cookie.readSetting(RESIZE_COOKIE_NAME,250); + if (width) { restoreWidth(width); } else { resizeWidth(); } + } + resizeHeight(treeview); + const url = location.href; + const i=url.indexOf("#"); + if (i>=0) window.location.hash=url.substr(i); + const _preventDefault = function(evt) { evt.preventDefault(); }; + if (treeview) + { + $("#splitbar").bind("dragstart", _preventDefault).bind("selectstart", _preventDefault); + $(".ui-resizable-handle").dblclick(collapseExpand); + } + $(window).on('load',resizeHeight); +} +/* @license-end */ diff --git a/html/search/close.svg b/html/search/close.svg new file mode 100644 index 00000000..337d6cc1 --- /dev/null +++ b/html/search/close.svg @@ -0,0 +1,18 @@ + + + + + + diff --git a/html/search/mag.svg b/html/search/mag.svg new file mode 100644 index 00000000..ffb6cf0d --- /dev/null +++ b/html/search/mag.svg @@ -0,0 +1,24 @@ + + + + + + + diff --git a/html/search/mag_d.svg b/html/search/mag_d.svg new file mode 100644 index 00000000..4122773f --- /dev/null +++ b/html/search/mag_d.svg @@ -0,0 +1,24 @@ + + + + + + + diff --git a/html/search/mag_sel.svg b/html/search/mag_sel.svg new file mode 100644 index 00000000..553dba87 --- /dev/null +++ b/html/search/mag_sel.svg @@ -0,0 +1,31 @@ + + + + + + + + + diff --git a/html/search/mag_seld.svg b/html/search/mag_seld.svg new file mode 100644 index 00000000..c906f84c --- /dev/null +++ b/html/search/mag_seld.svg @@ -0,0 +1,31 @@ + + + + + + + + + diff --git a/html/search/search.css b/html/search/search.css new file mode 100644 index 00000000..19f76f9d --- /dev/null +++ b/html/search/search.css @@ -0,0 +1,291 @@ +/*---------------- Search Box positioning */ + +#main-menu > li:last-child { + /* This
  • object is the parent of the search bar */ + display: flex; + justify-content: center; + align-items: center; + height: 36px; + margin-right: 1em; +} + +/*---------------- Search box styling */ + +.SRPage * { + font-weight: normal; + line-height: normal; +} + +dark-mode-toggle { + margin-left: 5px; + display: flex; + float: right; +} + +#MSearchBox { + display: inline-block; + white-space : nowrap; + background: var(--search-background-color); + border-radius: 0.65em; + box-shadow: var(--search-box-shadow); + z-index: 102; +} + +#MSearchBox .left { + display: inline-block; + vertical-align: middle; + height: 1.4em; +} + +#MSearchSelect { + display: inline-block; + vertical-align: middle; + width: 20px; + height: 19px; + background-image: var(--search-magnification-select-image); + margin: 0 0 0 0.3em; + padding: 0; +} + +#MSearchSelectExt { + display: inline-block; + vertical-align: middle; + width: 10px; + height: 19px; + background-image: var(--search-magnification-image); + margin: 0 0 0 0.5em; + padding: 0; +} + + +#MSearchField { + display: inline-block; + vertical-align: middle; + width: 7.5em; + height: 19px; + margin: 0 0.15em; + padding: 0; + line-height: 1em; + border:none; + color: var(--search-foreground-color); + outline: none; + font-family: var(--font-family-search); + -webkit-border-radius: 0px; + border-radius: 0px; + background: none; +} + +@media(hover: none) { + /* to avoid zooming on iOS */ + #MSearchField { + font-size: 16px; + } +} + +#MSearchBox .right { + display: inline-block; + vertical-align: middle; + width: 1.4em; + height: 1.4em; +} + +#MSearchClose { + display: none; + font-size: inherit; + background : none; + border: none; + margin: 0; + padding: 0; + outline: none; + +} + +#MSearchCloseImg { + padding: 0.3em; + margin: 0; +} + +.MSearchBoxActive #MSearchField { + color: var(--search-active-color); +} + + + +/*---------------- Search filter selection */ + +#MSearchSelectWindow { + display: none; + position: absolute; + left: 0; top: 0; + border: 1px solid var(--search-filter-border-color); + background-color: var(--search-filter-background-color); + z-index: 10001; + padding-top: 4px; + padding-bottom: 4px; + -moz-border-radius: 4px; + -webkit-border-top-left-radius: 4px; + -webkit-border-top-right-radius: 4px; + -webkit-border-bottom-left-radius: 4px; + -webkit-border-bottom-right-radius: 4px; + -webkit-box-shadow: 5px 5px 5px rgba(0, 0, 0, 0.15); +} + +.SelectItem { + font: 8pt var(--font-family-search); + padding-left: 2px; + padding-right: 12px; + border: 0px; +} + +span.SelectionMark { + margin-right: 4px; + font-family: var(--font-family-monospace); + outline-style: none; + text-decoration: none; +} + +a.SelectItem { + display: block; + outline-style: none; + color: var(--search-filter-foreground-color); + text-decoration: none; + padding-left: 6px; + padding-right: 12px; +} + +a.SelectItem:focus, +a.SelectItem:active { + color: var(--search-filter-foreground-color); + outline-style: none; + text-decoration: none; +} + +a.SelectItem:hover { + color: var(--search-filter-highlight-text-color); + background-color: var(--search-filter-highlight-bg-color); + outline-style: none; + text-decoration: none; + cursor: pointer; + display: block; +} + +/*---------------- Search results window */ + +iframe#MSearchResults { + /*width: 60ex;*/ + height: 15em; +} + +#MSearchResultsWindow { + display: none; + position: absolute; + left: 0; top: 0; + border: 1px solid var(--search-results-border-color); + background-color: var(--search-results-background-color); + z-index:10000; + width: 300px; + height: 400px; + overflow: auto; +} + +/* ----------------------------------- */ + + +#SRIndex { + clear:both; +} + +.SREntry { + font-size: 10pt; + padding-left: 1ex; +} + +.SRPage .SREntry { + font-size: 8pt; + padding: 1px 5px; +} + +div.SRPage { + margin: 5px 2px; + background-color: var(--search-results-background-color); +} + +.SRChildren { + padding-left: 3ex; padding-bottom: .5em +} + +.SRPage .SRChildren { + display: none; +} + +.SRSymbol { + font-weight: bold; + color: var(--search-results-foreground-color); + font-family: var(--font-family-search); + text-decoration: none; + outline: none; +} + +a.SRScope { + display: block; + color: var(--search-results-foreground-color); + font-family: var(--font-family-search); + font-size: 8pt; + text-decoration: none; + outline: none; +} + +a.SRSymbol:focus, a.SRSymbol:active, +a.SRScope:focus, a.SRScope:active { + text-decoration: underline; +} + +span.SRScope { + padding-left: 4px; + font-family: var(--font-family-search); +} + +.SRPage .SRStatus { + padding: 2px 5px; + font-size: 8pt; + font-style: italic; + font-family: var(--font-family-search); +} + +.SRResult { + display: none; +} + +div.searchresults { + margin-left: 10px; + margin-right: 10px; +} + +/*---------------- External search page results */ + +.pages b { + color: white; + padding: 5px 5px 3px 5px; + background-image: var(--nav-gradient-active-image-parent); + background-repeat: repeat-x; + text-shadow: 0 1px 1px #000000; +} + +.pages { + line-height: 17px; + margin-left: 4px; + text-decoration: none; +} + +.hl { + font-weight: bold; +} + +#searchresults { + margin-bottom: 20px; +} + +.searchpages { + margin-top: 10px; +} + diff --git a/html/search/search.js b/html/search/search.js new file mode 100644 index 00000000..666af01e --- /dev/null +++ b/html/search/search.js @@ -0,0 +1,694 @@ +/* + @licstart The following is the entire license notice for the JavaScript code in this file. + + The MIT License (MIT) + + Copyright (C) 1997-2020 by Dimitri van Heesch + + Permission is hereby granted, free of charge, to any person obtaining a copy of this software + and associated documentation files (the "Software"), to deal in the Software without restriction, + including without limitation the rights to use, copy, modify, merge, publish, distribute, + sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is + furnished to do so, subject to the following conditions: + + The above copyright notice and this permission notice shall be included in all copies or + substantial portions of the Software. + + THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING + BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND + NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, + DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, + OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + @licend The above is the entire license notice for the JavaScript code in this file + */ +const SEARCH_COOKIE_NAME = ''+'search_grp'; + +const searchResults = new SearchResults(); + +/* A class handling everything associated with the search panel. + + Parameters: + name - The name of the global variable that will be + storing this instance. Is needed to be able to set timeouts. + resultPath - path to use for external files +*/ +function SearchBox(name, resultsPath, extension) { + if (!name || !resultsPath) { alert("Missing parameters to SearchBox."); } + if (!extension || extension == "") { extension = ".html"; } + + function getXPos(item) { + let x = 0; + if (item.offsetWidth) { + while (item && item!=document.body) { + x += item.offsetLeft; + item = item.offsetParent; + } + } + return x; + } + + function getYPos(item) { + let y = 0; + if (item.offsetWidth) { + while (item && item!=document.body) { + y += item.offsetTop; + item = item.offsetParent; + } + } + return y; + } + + // ---------- Instance variables + this.name = name; + this.resultsPath = resultsPath; + this.keyTimeout = 0; + this.keyTimeoutLength = 500; + this.closeSelectionTimeout = 300; + this.lastSearchValue = ""; + this.lastResultsPage = ""; + this.hideTimeout = 0; + this.searchIndex = 0; + this.searchActive = false; + this.extension = extension; + + // ----------- DOM Elements + + this.DOMSearchField = () => document.getElementById("MSearchField"); + this.DOMSearchSelect = () => document.getElementById("MSearchSelect"); + this.DOMSearchSelectWindow = () => document.getElementById("MSearchSelectWindow"); + this.DOMPopupSearchResults = () => document.getElementById("MSearchResults"); + this.DOMPopupSearchResultsWindow = () => document.getElementById("MSearchResultsWindow"); + this.DOMSearchClose = () => document.getElementById("MSearchClose"); + this.DOMSearchBox = () => document.getElementById("MSearchBox"); + + // ------------ Event Handlers + + // Called when focus is added or removed from the search field. + this.OnSearchFieldFocus = function(isActive) { + this.Activate(isActive); + } + + this.OnSearchSelectShow = function() { + const searchSelectWindow = this.DOMSearchSelectWindow(); + const searchField = this.DOMSearchSelect(); + + const left = getXPos(searchField); + const top = getYPos(searchField) + searchField.offsetHeight; + + // show search selection popup + searchSelectWindow.style.display='block'; + searchSelectWindow.style.left = left + 'px'; + searchSelectWindow.style.top = top + 'px'; + + // stop selection hide timer + if (this.hideTimeout) { + clearTimeout(this.hideTimeout); + this.hideTimeout=0; + } + return false; // to avoid "image drag" default event + } + + this.OnSearchSelectHide = function() { + this.hideTimeout = setTimeout(this.CloseSelectionWindow.bind(this), + this.closeSelectionTimeout); + } + + // Called when the content of the search field is changed. + this.OnSearchFieldChange = function(evt) { + if (this.keyTimeout) { // kill running timer + clearTimeout(this.keyTimeout); + this.keyTimeout = 0; + } + + const e = evt ? evt : window.event; // for IE + if (e.keyCode==40 || e.keyCode==13) { + if (e.shiftKey==1) { + this.OnSearchSelectShow(); + const win=this.DOMSearchSelectWindow(); + for (let i=0;i do a search + this.Search(); + } + } + + this.OnSearchSelectKey = function(evt) { + const e = (evt) ? evt : window.event; // for IE + if (e.keyCode==40 && this.searchIndex0) { // Up + this.searchIndex--; + this.OnSelectItem(this.searchIndex); + } else if (e.keyCode==13 || e.keyCode==27) { + e.stopPropagation(); + this.OnSelectItem(this.searchIndex); + this.CloseSelectionWindow(); + this.DOMSearchField().focus(); + } + return false; + } + + // --------- Actions + + // Closes the results window. + this.CloseResultsWindow = function() { + this.DOMPopupSearchResultsWindow().style.display = 'none'; + this.DOMSearchClose().style.display = 'none'; + this.Activate(false); + } + + this.CloseSelectionWindow = function() { + this.DOMSearchSelectWindow().style.display = 'none'; + } + + // Performs a search. + this.Search = function() { + this.keyTimeout = 0; + + // strip leading whitespace + const searchValue = this.DOMSearchField().value.replace(/^ +/, ""); + + const code = searchValue.toLowerCase().charCodeAt(0); + let idxChar = searchValue.substr(0, 1).toLowerCase(); + if ( 0xD800 <= code && code <= 0xDBFF && searchValue > 1) { // surrogate pair + idxChar = searchValue.substr(0, 2); + } + + let jsFile; + let idx = indexSectionsWithContent[this.searchIndex].indexOf(idxChar); + if (idx!=-1) { + const hexCode=idx.toString(16); + jsFile = this.resultsPath + indexSectionNames[this.searchIndex] + '_' + hexCode + '.js'; + } + + const loadJS = function(url, impl, loc) { + const scriptTag = document.createElement('script'); + scriptTag.src = url; + scriptTag.onload = impl; + scriptTag.onreadystatechange = impl; + loc.appendChild(scriptTag); + } + + const domPopupSearchResultsWindow = this.DOMPopupSearchResultsWindow(); + const domSearchBox = this.DOMSearchBox(); + const domPopupSearchResults = this.DOMPopupSearchResults(); + const domSearchClose = this.DOMSearchClose(); + const resultsPath = this.resultsPath; + + const handleResults = function() { + document.getElementById("Loading").style.display="none"; + if (typeof searchData !== 'undefined') { + createResults(resultsPath); + document.getElementById("NoMatches").style.display="none"; + } + + if (idx!=-1) { + searchResults.Search(searchValue); + } else { // no file with search results => force empty search results + searchResults.Search('===='); + } + + if (domPopupSearchResultsWindow.style.display!='block') { + domSearchClose.style.display = 'inline-block'; + let left = getXPos(domSearchBox) + 150; + let top = getYPos(domSearchBox) + 20; + domPopupSearchResultsWindow.style.display = 'block'; + left -= domPopupSearchResults.offsetWidth; + const maxWidth = document.body.clientWidth; + const maxHeight = document.body.clientHeight; + let width = 300; + if (left<10) left=10; + if (width+left+8>maxWidth) width=maxWidth-left-8; + let height = 400; + if (height+top+8>maxHeight) height=maxHeight-top-8; + domPopupSearchResultsWindow.style.top = top + 'px'; + domPopupSearchResultsWindow.style.left = left + 'px'; + domPopupSearchResultsWindow.style.width = width + 'px'; + domPopupSearchResultsWindow.style.height = height + 'px'; + } + } + + if (jsFile) { + loadJS(jsFile, handleResults, this.DOMPopupSearchResultsWindow()); + } else { + handleResults(); + } + + this.lastSearchValue = searchValue; + } + + // -------- Activation Functions + + // Activates or deactivates the search panel, resetting things to + // their default values if necessary. + this.Activate = function(isActive) { + if (isActive || // open it + this.DOMPopupSearchResultsWindow().style.display == 'block' + ) { + this.DOMSearchBox().className = 'MSearchBoxActive'; + this.searchActive = true; + } else if (!isActive) { // directly remove the panel + this.DOMSearchBox().className = 'MSearchBoxInactive'; + this.searchActive = false; + this.lastSearchValue = '' + this.lastResultsPage = ''; + this.DOMSearchField().value = ''; + } + } +} + +// ----------------------------------------------------------------------- + +// The class that handles everything on the search results page. +function SearchResults() { + + function convertToId(search) { + let result = ''; + for (let i=0;i. + this.lastMatchCount = 0; + this.lastKey = 0; + this.repeatOn = false; + + // Toggles the visibility of the passed element ID. + this.FindChildElement = function(id) { + const parentElement = document.getElementById(id); + let element = parentElement.firstChild; + + while (element && element!=parentElement) { + if (element.nodeName.toLowerCase() == 'div' && element.className == 'SRChildren') { + return element; + } + + if (element.nodeName.toLowerCase() == 'div' && element.hasChildNodes()) { + element = element.firstChild; + } else if (element.nextSibling) { + element = element.nextSibling; + } else { + do { + element = element.parentNode; + } + while (element && element!=parentElement && !element.nextSibling); + + if (element && element!=parentElement) { + element = element.nextSibling; + } + } + } + } + + this.Toggle = function(id) { + const element = this.FindChildElement(id); + if (element) { + if (element.style.display == 'block') { + element.style.display = 'none'; + } else { + element.style.display = 'block'; + } + } + } + + // Searches for the passed string. If there is no parameter, + // it takes it from the URL query. + // + // Always returns true, since other documents may try to call it + // and that may or may not be possible. + this.Search = function(search) { + if (!search) { // get search word from URL + search = window.location.search; + search = search.substring(1); // Remove the leading '?' + search = unescape(search); + } + + search = search.replace(/^ +/, ""); // strip leading spaces + search = search.replace(/ +$/, ""); // strip trailing spaces + search = search.toLowerCase(); + search = convertToId(search); + + const resultRows = document.getElementsByTagName("div"); + let matches = 0; + + let i = 0; + while (i < resultRows.length) { + const row = resultRows.item(i); + if (row.className == "SRResult") { + let rowMatchName = row.id.toLowerCase(); + rowMatchName = rowMatchName.replace(/^sr\d*_/, ''); // strip 'sr123_' + + if (search.length<=rowMatchName.length && + rowMatchName.substr(0, search.length)==search) { + row.style.display = 'block'; + matches++; + } else { + row.style.display = 'none'; + } + } + i++; + } + document.getElementById("Searching").style.display='none'; + if (matches == 0) { // no results + document.getElementById("NoMatches").style.display='block'; + } else { // at least one result + document.getElementById("NoMatches").style.display='none'; + } + this.lastMatchCount = matches; + return true; + } + + // return the first item with index index or higher that is visible + this.NavNext = function(index) { + let focusItem; + for (;;) { + const focusName = 'Item'+index; + focusItem = document.getElementById(focusName); + if (focusItem && focusItem.parentNode.parentNode.style.display=='block') { + break; + } else if (!focusItem) { // last element + break; + } + focusItem=null; + index++; + } + return focusItem; + } + + this.NavPrev = function(index) { + let focusItem; + for (;;) { + const focusName = 'Item'+index; + focusItem = document.getElementById(focusName); + if (focusItem && focusItem.parentNode.parentNode.style.display=='block') { + break; + } else if (!focusItem) { // last element + break; + } + focusItem=null; + index--; + } + return focusItem; + } + + this.ProcessKeys = function(e) { + if (e.type == "keydown") { + this.repeatOn = false; + this.lastKey = e.keyCode; + } else if (e.type == "keypress") { + if (!this.repeatOn) { + if (this.lastKey) this.repeatOn = true; + return false; // ignore first keypress after keydown + } + } else if (e.type == "keyup") { + this.lastKey = 0; + this.repeatOn = false; + } + return this.lastKey!=0; + } + + this.Nav = function(evt,itemIndex) { + const e = (evt) ? evt : window.event; // for IE + if (e.keyCode==13) return true; + if (!this.ProcessKeys(e)) return false; + + if (this.lastKey==38) { // Up + const newIndex = itemIndex-1; + let focusItem = this.NavPrev(newIndex); + if (focusItem) { + let child = this.FindChildElement(focusItem.parentNode.parentNode.id); + if (child && child.style.display == 'block') { // children visible + let n=0; + let tmpElem; + for (;;) { // search for last child + tmpElem = document.getElementById('Item'+newIndex+'_c'+n); + if (tmpElem) { + focusItem = tmpElem; + } else { // found it! + break; + } + n++; + } + } + } + if (focusItem) { + focusItem.focus(); + } else { // return focus to search field + document.getElementById("MSearchField").focus(); + } + } else if (this.lastKey==40) { // Down + const newIndex = itemIndex+1; + let focusItem; + const item = document.getElementById('Item'+itemIndex); + const elem = this.FindChildElement(item.parentNode.parentNode.id); + if (elem && elem.style.display == 'block') { // children visible + focusItem = document.getElementById('Item'+itemIndex+'_c0'); + } + if (!focusItem) focusItem = this.NavNext(newIndex); + if (focusItem) focusItem.focus(); + } else if (this.lastKey==39) { // Right + const item = document.getElementById('Item'+itemIndex); + const elem = this.FindChildElement(item.parentNode.parentNode.id); + if (elem) elem.style.display = 'block'; + } else if (this.lastKey==37) { // Left + const item = document.getElementById('Item'+itemIndex); + const elem = this.FindChildElement(item.parentNode.parentNode.id); + if (elem) elem.style.display = 'none'; + } else if (this.lastKey==27) { // Escape + e.stopPropagation(); + searchBox.CloseResultsWindow(); + document.getElementById("MSearchField").focus(); + } else if (this.lastKey==13) { // Enter + return true; + } + return false; + } + + this.NavChild = function(evt,itemIndex,childIndex) { + const e = (evt) ? evt : window.event; // for IE + if (e.keyCode==13) return true; + if (!this.ProcessKeys(e)) return false; + + if (this.lastKey==38) { // Up + if (childIndex>0) { + const newIndex = childIndex-1; + document.getElementById('Item'+itemIndex+'_c'+newIndex).focus(); + } else { // already at first child, jump to parent + document.getElementById('Item'+itemIndex).focus(); + } + } else if (this.lastKey==40) { // Down + const newIndex = childIndex+1; + let elem = document.getElementById('Item'+itemIndex+'_c'+newIndex); + if (!elem) { // last child, jump to parent next parent + elem = this.NavNext(itemIndex+1); + } + if (elem) { + elem.focus(); + } + } else if (this.lastKey==27) { // Escape + e.stopPropagation(); + searchBox.CloseResultsWindow(); + document.getElementById("MSearchField").focus(); + } else if (this.lastKey==13) { // Enter + return true; + } + return false; + } +} + +function createResults(resultsPath) { + + function setKeyActions(elem,action) { + elem.setAttribute('onkeydown',action); + elem.setAttribute('onkeypress',action); + elem.setAttribute('onkeyup',action); + } + + function setClassAttr(elem,attr) { + elem.setAttribute('class',attr); + elem.setAttribute('className',attr); + } + + const results = document.getElementById("SRResults"); + results.innerHTML = ''; + searchData.forEach((elem,index) => { + const id = elem[0]; + const srResult = document.createElement('div'); + srResult.setAttribute('id','SR_'+id); + setClassAttr(srResult,'SRResult'); + const srEntry = document.createElement('div'); + setClassAttr(srEntry,'SREntry'); + const srLink = document.createElement('a'); + srLink.setAttribute('id','Item'+index); + setKeyActions(srLink,'return searchResults.Nav(event,'+index+')'); + setClassAttr(srLink,'SRSymbol'); + srLink.innerHTML = elem[1][0]; + srEntry.appendChild(srLink); + if (elem[1].length==2) { // single result + srLink.setAttribute('href',resultsPath+elem[1][1][0]); + srLink.setAttribute('onclick','searchBox.CloseResultsWindow()'); + if (elem[1][1][1]) { + srLink.setAttribute('target','_parent'); + } else { + srLink.setAttribute('target','_blank'); + } + const srScope = document.createElement('span'); + setClassAttr(srScope,'SRScope'); + srScope.innerHTML = elem[1][1][2]; + srEntry.appendChild(srScope); + } else { // multiple results + srLink.setAttribute('href','javascript:searchResults.Toggle("SR_'+id+'")'); + const srChildren = document.createElement('div'); + 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    +
    + + + + + + +
    +
    Many-vs-many sketch comparison 1 +
    +
    Fast many-vs-many sketch comparison
    +
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    utils.h
    +
    +
    +
    1#ifndef UTILS_H
    +
    2#define UTILS_H
    +
    3
    +
    4#include <iostream>
    +
    5#include <vector>
    +
    6#include <string>
    +
    7#include <fstream>
    +
    8#include <stdexcept>
    +
    9#include <thread>
    +
    10#include <mutex>
    +
    11#include <algorithm>
    +
    12#include <utility>
    +
    13#include <set>
    +
    14#include <map>
    +
    15#include <unordered_map>
    +
    16#include <unordered_set>
    +
    17#include <cmath>
    +
    18#include <limits>
    +
    19#include <iomanip>
    +
    20#include <sstream>
    +
    21#include <chrono>
    +
    22#include <random>
    +
    23
    +
    24#include "json.hpp"
    +
    25
    +
    26using json = nlohmann::json;
    +
    27
    +
    28typedef unsigned long long int hash_t;
    +
    29
    +
    37std::vector<hash_t> read_min_hashes(const std::string& sketch_path);
    +
    38
    +
    39
    +
    40
    +
    41
    +
    42
    +
    43
    +
    50void compute_index_from_sketches(std::vector<std::vector<hash_t>>& sketches, std::unordered_map<hash_t, std::vector<int>>& hash_index);
    +
    51
    +
    52
    +
    53
    +
    54
    +
    55
    +
    56
    +
    63void get_sketch_paths(const std::string& filelist, std::vector<std::string>& sketch_paths);
    +
    64
    +
    65
    +
    66
    +
    67
    +
    68
    +
    69
    +
    78void read_sketches(std::vector<std::string>& sketch_paths,
    +
    79 std::vector<std::vector<hash_t>>& sketches,
    +
    80 std::vector<int>& empty_sketch_ids,
    +
    81 const uint num_threads);
    +
    82
    +
    83
    +
    84
    +
    85
    +
    86
    +
    92void show_empty_sketches(const std::vector<int>&);
    +
    93
    +
    94
    +
    95
    +
    96
    +
    109void compute_intersection_matrix(const std::vector<std::vector<hash_t>>& sketches_query,
    +
    110 const std::vector<std::vector<hash_t>>& sketches_ref,
    +
    111 const std::unordered_map<hash_t, std::vector<int>>& hash_index_ref,
    +
    112 const std::string& out_dir,
    +
    113 std::vector<std::vector<int>>& similars,
    +
    114 double containment_threshold,
    +
    115 const int num_passes, const int num_threads);
    +
    116
    +
    117#endif
    +
    + +
    +Generated by doxygen 1.11.0 +
    +
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+\newcommand{\subsubsubsubsectionmark}[1]{} +\newcommand{\subsubsubsubsubsectionmark}[1]{} +\newcommand{\subsubsubsubsubsubsectionmark}[1]{} +\def\toclevel@subsubsubsection{4} +\def\toclevel@subsubsubsubsection{5} +\def\toclevel@subsubsubsubsubsection{6} +\def\toclevel@subsubsubsubsubsubsection{7} +\def\toclevel@paragraph{8} +\def\toclevel@subparagraph{9} + +\newcommand\doxysection{\@startsection {section}{1}{\z@}% + {-3.5ex \@plus -1ex \@minus -.2ex}% + {2.3ex \@plus.2ex}% + {\raggedright\normalfont\Large\bfseries}} +\newcommand\doxysubsection{\@startsection{subsection}{2}{\z@}% + {-3.25ex\@plus -1ex \@minus -.2ex}% + {1.5ex \@plus .2ex}% + {\raggedright\normalfont\large\bfseries}} +\newcommand\doxysubsubsection{\@startsection{subsubsection}{3}{\z@}% + {-3.25ex\@plus -1ex \@minus -.2ex}% + {1.5ex \@plus .2ex}% + {\raggedright\normalfont\normalsize\bfseries}} +\newcommand\doxysubsubsubsection{\@startsection{subsubsubsection}{4}{\z@}% + {-3.25ex\@plus -1ex \@minus -.2ex}% + {1.5ex \@plus .2ex}% + {\raggedright\normalfont\normalsize\bfseries}} +\newcommand\doxysubsubsubsubsection{\@startsection{subsubsubsubsection}{5}{\z@}% + {-3.25ex\@plus -1ex \@minus -.2ex}% + {1.5ex \@plus .2ex}% + {\raggedright\normalfont\normalsize\bfseries}} +\newcommand\doxysubsubsubsubsubsection{\@startsection{subsubsubsubsubsection}{6}{\z@}% + {-3.25ex\@plus -1ex \@minus -.2ex}% + {1.5ex \@plus .2ex}% + {\raggedright\normalfont\normalsize\bfseries}} +\newcommand\doxysubsubsubsubsubsubsection{\@startsection{subsubsubsubsubsubsection}{7}{\z@}% + {-3.25ex\@plus -1ex \@minus -.2ex}% + {1.5ex \@plus .2ex}% + {\raggedright\normalfont\normalsize\bfseries}} +\newcommand\doxyparagraph{\@startsection{paragraph}{8}{\z@}% + {-3.25ex\@plus -1ex \@minus -.2ex}% + {1.5ex \@plus .2ex}% + {\raggedright\normalfont\normalsize\bfseries}} +\newcommand\doxysubparagraph{\@startsection{subparagraph}{9}{\parindent}% + {-3.25ex\@plus -1ex \@minus -.2ex}% + {1.5ex \@plus .2ex}% + {\raggedright\normalfont\normalsize\bfseries}} + +\newcommand\l@subsubsubsection{\@dottedtocline{4}{6.1em}{7.8em}} +\newcommand\l@subsubsubsubsection{\@dottedtocline{5}{6.1em}{9.4em}} +\newcommand\l@subsubsubsubsubsection{\@dottedtocline{6}{6.1em}{11em}} +\newcommand\l@subsubsubsubsubsubsection{\@dottedtocline{7}{6.1em}{12.6em}} +\renewcommand\l@paragraph{\@dottedtocline{8}{6.1em}{14.2em}} +\renewcommand\l@subparagraph{\@dottedtocline{9}{6.1em}{15.8em}} +\makeatother +% the sectsty doesn't look to be maintained but gives, in our case, some warning like: +% LaTeX Warning: Command \underline has changed. +% Check if current package is valid. +% unfortunately had to copy the relevant part +\newcommand*{\doxypartfont} [1] + {\gdef\SS@partnumberfont{\SS@sectid{0}\SS@nopart\SS@makeulinepartchap#1} + \gdef\SS@parttitlefont{\SS@sectid{0}\SS@titlepart\SS@makeulinepartchap#1}} +\newcommand*{\doxychapterfont} [1] + {\gdef\SS@chapnumfont{\SS@sectid{1}\SS@nopart\SS@makeulinepartchap#1} + \gdef\SS@chaptitlefont{\SS@sectid{1}\SS@titlepart\SS@makeulinepartchap#1}} +\newcommand*{\doxysectionfont} [1] + {\gdef\SS@sectfont{\SS@sectid{2}\SS@rr\SS@makeulinesect#1}} +\newcommand*{\doxysubsectionfont} [1] + {\gdef\SS@subsectfont{\SS@sectid{3}\SS@rr\SS@makeulinesect#1}} +\newcommand*{\doxysubsubsectionfont} [1] + {\gdef\SS@subsubsectfont{\SS@sectid{4}\SS@rr\SS@makeulinesect#1}} +\newcommand*{\doxyparagraphfont} [1] + {\gdef\SS@parafont{\SS@sectid{5}\SS@rr\SS@makeulinesect#1}} +\newcommand*{\doxysubparagraphfont} [1] + {\gdef\SS@subparafont{\SS@sectid{6}\SS@rr\SS@makeulinesect#1}} +\newcommand*{\doxyminisecfont} [1] + {\gdef\SS@minisecfont{\SS@sectid{7}\SS@rr\SS@makeulinepartchap#1}} +\newcommand*{\doxyallsectionsfont} [1] {\doxypartfont{#1}% + \doxychapterfont{#1}% + \doxysectionfont{#1}% + \doxysubsectionfont{#1}% + \doxysubsubsectionfont{#1}% + \doxyparagraphfont{#1}% + \doxysubparagraphfont{#1}% + \doxyminisecfont{#1}}% +% Define caption that is also suitable in a table +% for usage with hyperlinks +\makeatletter +\def\doxyfigcaption{% +\H@refstepcounter{figure}% +\@dblarg{\@caption{figure}}} + +% for usage without hyperlinks +\def\doxyfigcaptionnolink{% +\refstepcounter{figure}% +\@dblarg{\@caption{figure}}} +\makeatother + +% Define alpha enumarative names for counters > 26 +\makeatletter +\def\enumalphalphcnt#1{\expandafter\@enumalphalphcnt\csname c@#1\endcsname} +\def\@enumalphalphcnt#1{\alphalph{#1}} +\def\enumAlphAlphcnt#1{\expandafter\@enumAlphAlphcnt\csname c@#1\endcsname} +\def\@enumAlphAlphcnt#1{\AlphAlph{#1}} +\makeatother +\AddEnumerateCounter{\enumalphalphcnt}{\@enumalphalphcnt}{aa} +\AddEnumerateCounter{\enumAlphAlphcnt}{\@enumAlphAlphcnt}{AA} diff --git a/latex/etoc_doxygen.sty b/latex/etoc_doxygen.sty new file mode 100644 index 00000000..5f7e1274 --- /dev/null +++ b/latex/etoc_doxygen.sty @@ -0,0 +1,2178 @@ +%% +%% This is file etoc_doxygen.sty +%% +%% Apart from this header notice and the renaming from etoc to +%% etoc_doxygen (also in \ProvidesPackage) it is an identical +%% copy of +%% +%% etoc.sty +%% +%% at version 1.2b of 2023/07/01. +%% +%% This file has been provided to Doxygen team courtesy of the +%% author for benefit of users having a LaTeX installation not +%% yet providing version 1.2a or later of etoc, whose +%% deeplevels feature is required. +%% +%% The original source etoc.dtx (only of the latest version at +%% any given time) is available at +%% +%% https://ctan.org/pkg/etoc +%% +%% and contains the terms for copying and modification as well +%% as author contact information. +%% +%% In brief any modified versions of this file must be renamed +%% with new filenames distinct from etoc.sty. +%% +%% Package: etoc +%% Version: 1.2b +%% License: LPPL 1.3c +%% Copyright (C) 2012-2023 Jean-Francois B. +\NeedsTeXFormat{LaTeX2e}[2003/12/01] +\ProvidesPackage{etoc_doxygen}[2023/07/01 v1.2b Completely customisable TOCs (JFB)] +\newif\ifEtoc@oldLaTeX +\@ifl@t@r\fmtversion{2020/10/01} + {} + {\Etoc@oldLaTeXtrue + \PackageInfo{etoc}{Old LaTeX (\fmtversion) detected!\MessageBreak + Since 1.1a (2023/01/14), etoc prefers LaTeX at least\MessageBreak + as recent as 2020-10-01, for reasons of the .toc file,\MessageBreak + and used to require it (from 1.1a to 1.2).\MessageBreak + This etoc (1.2b) does not *require* it, but has not been\MessageBreak + tested thoroughly on old LaTeX (especially if document\MessageBreak + does not use hyperref) and retrofitting was done only\MessageBreak + on basis of author partial remembrances of old context.\MessageBreak + Reported}} +\RequirePackage{kvoptions} +\SetupKeyvalOptions{prefix=Etoc@} +\newif\ifEtoc@lof +\DeclareVoidOption{lof}{\Etoc@loftrue + \PackageInfo{etoc}{Experimental support for \string\locallistoffigures.\MessageBreak + Barely tested, use at own risk}% +} +\newif\ifEtoc@lot +\DeclareVoidOption{lot}{\Etoc@lottrue + \PackageInfo{etoc}{Experimental support for \string\locallistoftables.\MessageBreak + Barely tested, use at own risk}% +} +\@ifclassloaded{memoir}{ +\PackageInfo{etoc} + {As this is with memoir class, all `...totoc' options\MessageBreak + are set true by default. Reported} +\DeclareBoolOption[true]{maintoctotoc} +\DeclareBoolOption[true]{localtoctotoc} +\DeclareBoolOption[true]{localloftotoc} +\DeclareBoolOption[true]{locallottotoc} +}{ +\DeclareBoolOption[false]{maintoctotoc} +\DeclareBoolOption[false]{localtoctotoc} +\DeclareBoolOption[false]{localloftotoc} +\DeclareBoolOption[false]{locallottotoc} +} +\DeclareBoolOption[true]{ouroboros} +\DeclareBoolOption[false]{deeplevels} +\DeclareDefaultOption{\PackageWarning{etoc}{Option `\CurrentOption' is unknown.}} +\ProcessKeyvalOptions* +\DisableKeyvalOption[action=error,package=etoc]{etoc}{lof} +\DisableKeyvalOption[action=error,package=etoc]{etoc}{lot} +\DisableKeyvalOption[action=error,package=etoc]{etoc}{deeplevels} +\def\etocsetup#1{\setkeys{etoc}{#1}} +\def\etocifmaintoctotoc{\ifEtoc@maintoctotoc + \expandafter\@firstoftwo + \else + \expandafter\@secondoftwo + \fi} +\def\etociflocaltoctotoc{\ifEtoc@localtoctotoc + \expandafter\@firstoftwo + \else + \expandafter\@secondoftwo + \fi} +\def\etociflocalloftotoc{\ifEtoc@localloftotoc + \expandafter\@firstoftwo + \else + \expandafter\@secondoftwo + \fi} +\def\etociflocallottotoc{\ifEtoc@locallottotoc + \expandafter\@firstoftwo + \else + \expandafter\@secondoftwo + \fi} +\RequirePackage{multicol} +\def\etoc@{\etoc@} +\long\def\Etoc@gobtoetoc@ #1\etoc@{} +\newtoks\Etoc@toctoks +\def\Etoc@par{\par} +\def\etocinline{\def\Etoc@par{}} +\let\etocnopar\etocinline +\def\etocdisplay{\def\Etoc@par{\par}} +\let\Etoc@global\@empty +\def\etocglobaldefs{\let\Etoc@global\global\let\tof@global\global} +\def\etoclocaldefs {\let\Etoc@global\@empty\let\tof@global\@empty} +\newif\ifEtoc@numbered +\newif\ifEtoc@hyperref +\newif\ifEtoc@parskip +\newif\ifEtoc@tocwithid +\newif\ifEtoc@standardlines +\newif\ifEtoc@etocstyle +\newif\ifEtoc@classstyle +\newif\ifEtoc@keeporiginaltoc +\newif\ifEtoc@skipprefix +\newif\ifEtoc@isfirst +\newif\ifEtoc@localtoc +\newif\ifEtoc@skipthisone +\newif\ifEtoc@stoptoc +\newif\ifEtoc@notactive +\newif\ifEtoc@mustclosegroup +\newif\ifEtoc@isemptytoc +\newif\ifEtoc@checksemptiness +\def\etocchecksemptiness {\Etoc@checksemptinesstrue } +\def\etocdoesnotcheckemptiness {\Etoc@checksemptinessfalse } +\newif\ifEtoc@notocifnotoc +\def\etocnotocifnotoc {\Etoc@checksemptinesstrue\Etoc@notocifnotoctrue } +\newcounter{etoc@tocid} +\def\Etoc@tocext{toc} +\def\Etoc@lofext{lof} +\def\Etoc@lotext{lot} +\let\Etoc@currext\Etoc@tocext +\def\etocifislocal{\ifEtoc@localtoc\expandafter\@firstoftwo\else + \expandafter\@secondoftwo\fi + } +\def\etocifislocaltoc{\etocifislocal{\ifx\Etoc@currext\Etoc@tocext + \expandafter\@firstoftwo\else + \expandafter\@secondoftwo\fi}% + {\@secondoftwo}% + } +\def\etocifislocallof{\etocifislocal{\ifx\Etoc@currext\Etoc@lofext + \expandafter\@firstoftwo\else + \expandafter\@secondoftwo\fi}% + {\@secondoftwo}% + } +\def\etocifislocallot{\etocifislocal{\ifx\Etoc@currext\Etoc@lotext + \expandafter\@firstoftwo\else + \expandafter\@secondoftwo\fi}% + {\@secondoftwo}% + } +\expandafter\def\csname Etoc@-3@@\endcsname {-\thr@@} +\expandafter\def\csname Etoc@-2@@\endcsname {-\tw@} +\expandafter\let\csname Etoc@-1@@\endcsname \m@ne +\expandafter\let\csname Etoc@0@@\endcsname \z@ +\expandafter\let\csname Etoc@1@@\endcsname \@ne +\expandafter\let\csname Etoc@2@@\endcsname \tw@ +\expandafter\let\csname Etoc@3@@\endcsname \thr@@ +\expandafter\chardef\csname Etoc@4@@\endcsname 4 +\expandafter\chardef\csname Etoc@5@@\endcsname 5 +\expandafter\chardef\csname Etoc@6@@\endcsname 6 +\ifEtoc@deeplevels + \expandafter\chardef\csname Etoc@7@@\endcsname 7 + \expandafter\chardef\csname Etoc@8@@\endcsname 8 + \expandafter\chardef\csname Etoc@9@@\endcsname 9 + \expandafter\chardef\csname Etoc@10@@\endcsname 10 + \expandafter\chardef\csname Etoc@11@@\endcsname 11 + \expandafter\chardef\csname Etoc@12@@\endcsname 12 +\fi +\expandafter\let\expandafter\Etoc@maxlevel + \csname Etoc@\ifEtoc@deeplevels12\else6\fi @@\endcsname +\edef\etocthemaxlevel{\number\Etoc@maxlevel} +\@ifclassloaded{memoir}{\def\Etoc@minf{-\thr@@}}{\def\Etoc@minf{-\tw@}} +\let\Etoc@none@@ \Etoc@minf +\expandafter\let\expandafter\Etoc@all@@ + \csname Etoc@\ifEtoc@deeplevels11\else5\fi @@\endcsname +\let\Etoc@dolevels\@empty +\def\Etoc@newlevel #1{\expandafter\def\expandafter\Etoc@dolevels\expandafter + {\Etoc@dolevels\Etoc@do{#1}}} +\ifdefined\expanded + \def\etocsetlevel#1#2{\expanded{\noexpand\etoc@setlevel{#1}{#2}}}% +\else + \def\etocsetlevel#1#2{{\edef\Etoc@tmp{\noexpand\etoc@setlevel{#1}{#2}}\expandafter}\Etoc@tmp}% +\fi +\def\etoc@setlevel#1#2{% + \edef\Etoc@tmp{\the\numexpr#2}% + \if1\ifnum\Etoc@tmp>\Etoc@maxlevel0\fi\unless\ifnum\Etoc@minf<\Etoc@tmp;\fi1% + \ifEtoc@deeplevels + \in@{.#1,}{.none,.all,.figure,.table,.-3,.-2,.-1,.0,.1,.2,.3,.4,.5,.6,% + .7,.8,.9,.10,.11,.12,}% + \else + \in@{.#1,}{.none,.all,.figure,.table,.-3,.-2,.-1,.0,.1,.2,.3,.4,.5,.6,}% + \fi + \ifin@\else\if\@car#1\@nil @\in@true\fi\fi + \ifin@ + \PackageWarning{etoc} + {Sorry, but `#1' is forbidden as level name.\MessageBreak + \if\@car#1\@nil @% + (because of the @ as first character)\MessageBreak\fi + Reported}% + \else + \etocifunknownlevelTF{#1}{\Etoc@newlevel{#1}}{}% + \expandafter\let\csname Etoc@#1@@\expandafter\endcsname + \csname Etoc@\Etoc@tmp @@\endcsname + \expandafter\edef\csname Etoc@@#1@@\endcsname + {\expandafter\noexpand\csname Etoc@#1@@\endcsname}% + \expandafter\edef\csname toclevel@@#1\endcsname + {\expandafter\noexpand\csname toclevel@#1\endcsname}% + \fi + \else + \PackageWarning{etoc} + {Argument `\detokenize{#2}' of \string\etocsetlevel\space should + represent one of\MessageBreak + \ifnum\Etoc@minf=-\thr@@-2, \fi-1, 0, 1, 2, \ifEtoc@deeplevels ...\else3, 4\fi, + \the\numexpr\Etoc@maxlevel-1, or \number\Etoc@maxlevel\space + but evaluates to \Etoc@tmp.\MessageBreak + The level of `#1' will be set to \number\Etoc@maxlevel.\MessageBreak + Tables of contents will ignore `#1' as long\MessageBreak + as its level is \number\Etoc@maxlevel\space (=\string\etocthemaxlevel).% + \MessageBreak + Reported}% + \etocifunknownlevelTF{#1}{\Etoc@newlevel{#1}}{}% + \expandafter\let\csname Etoc@#1@@\endcsname\Etoc@maxlevel + \fi +} +\def\etoclevel#1{\csname Etoc@#1@@\endcsname} +\def\etocthelevel#1{\number\csname Etoc@#1@@\endcsname} +\def\etocifunknownlevelTF#1{\@ifundefined{Etoc@#1@@}} +\@ifclassloaded{memoir}{\etocsetlevel{book}{-2}}{} +\etocsetlevel{part}{-1} +\etocsetlevel{chapter}{0} +\etocsetlevel{section}{1} +\etocsetlevel{subsection}{2} +\etocsetlevel{subsubsection}{3} +\etocsetlevel{paragraph}{4} +\etocsetlevel{subparagraph}{5} +\ifdefined\c@chapter + \etocsetlevel{appendix}{0} +\else + \etocsetlevel{appendix}{1} +\fi +\def\Etoc@do#1{\@namedef{l@@#1}{\csname l@#1\endcsname}} +\Etoc@dolevels +\let\Etoc@figure@@\Etoc@maxlevel +\let\Etoc@table@@ \Etoc@maxlevel +\let\Etoc@gobblethreeorfour\@gobblefour +\ifdefined\@gobblethree + \let\Etoc@gobblethree\@gobblethree +\else + \long\def\Etoc@gobblethree#1#2#3{}% +\fi +\AtBeginDocument{% +\@ifpackageloaded{parskip}{\Etoc@parskiptrue}{}% +\@ifpackageloaded{hyperref} + {\Etoc@hyperreftrue} + {\ifEtoc@oldLaTeX + \let\Etoc@gobblethreeorfour\Etoc@gobblethree + \let\Etoc@etoccontentsline@fourargs\Etoc@etoccontentsline@ + \long\def\Etoc@etoccontentsline@#1#2#3{% + \Etoc@etoccontentsline@fourargs{#1}{#2}{#3}{}% + }% + \fi + }% +} +\def\etocskipfirstprefix {\global\Etoc@skipprefixtrue } +\def\Etoc@updatestackofends#1\etoc@{\gdef\Etoc@stackofends{#1}} +\def\Etoc@stackofends{{-3}{}} +\def\Etoc@doendsandbegin{% + \expandafter\Etoc@traversestackofends\Etoc@stackofends\etoc@ +} +\def\Etoc@traversestackofends#1{% + \ifnum#1>\Etoc@level + \csname Etoc@end@#1\endcsname + \expandafter\Etoc@traversestackofends + \else + \Etoc@traversestackofends@done{#1}% + \fi +} +\def\Etoc@traversestackofends@done#1#2{#2% + \ifnum#1<\Etoc@level + \csname Etoc@begin@\the\numexpr\Etoc@level\endcsname + \Etoc@global\Etoc@isfirsttrue + \edef\Etoc@tmp{{\the\numexpr\Etoc@level}}% + \else + \Etoc@global\Etoc@isfirstfalse + \let\Etoc@tmp\@empty + \fi + \expandafter\Etoc@updatestackofends\Etoc@tmp{#1}% +} +\def\Etoc@etoccontentsline #1{% + \let\Etoc@next\Etoc@gobblethreeorfour + \ifnum\csname Etoc@#1@@\endcsname=\Etoc@maxlevel + \else + \Etoc@skipthisonefalse + \global\expandafter\let\expandafter\Etoc@level\csname Etoc@#1@@\endcsname + \if @\@car#1\@nil\else\global\let\Etoc@virtualtop\Etoc@level\fi + \ifEtoc@localtoc + \ifEtoc@stoptoc + \Etoc@skipthisonetrue + \else + \ifEtoc@notactive + \Etoc@skipthisonetrue + \else + \unless\ifnum\Etoc@level>\etoclocaltop + \Etoc@skipthisonetrue + \global\Etoc@stoptoctrue + \fi + \fi + \fi + \fi + \ifEtoc@skipthisone + \else + \unless\ifnum\Etoc@level>\c@tocdepth + \ifEtoc@standardlines + \let\Etoc@next\Etoc@savedcontentsline + \else + \let\Etoc@next\Etoc@etoccontentsline@ + \fi + \fi + \fi + \fi + \Etoc@next{#1}% +} +\def\Etoc@etoccontentsline@ #1#2#3#4{% + \Etoc@doendsandbegin + \Etoc@global\edef\Etoc@prefix {\expandafter\noexpand + \csname Etoc@prefix@\the\numexpr\Etoc@level\endcsname }% + \Etoc@global\edef\Etoc@contents{\expandafter\noexpand + \csname Etoc@contents@\the\numexpr\Etoc@level\endcsname }% + \ifEtoc@skipprefix \Etoc@global\def\Etoc@prefix{\@empty}\fi + \global\Etoc@skipprefixfalse + \Etoc@lxyz{#2}{#3}{#4}% + \Etoc@prefix + \Etoc@contents +} +\def\Etoc@lxyz #1#2#3{% + \ifEtoc@hyperref + \Etoc@global\def\etocthelink##1{\hyperlink{#3}{##1}}% + \else + \Etoc@global\let\etocthelink\@firstofone + \fi + \Etoc@global\def\etocthepage {#2}% + \ifEtoc@hyperref + \ifx\etocthepage\@empty + \Etoc@global\let\etocthelinkedpage\@empty + \else + \Etoc@global\def\etocthelinkedpage{\hyperlink {#3}{#2}}% + \fi + \else + \Etoc@global\let\etocthelinkedpage\etocthepage + \fi + \Etoc@global\def\etocthename{#1}% + \futurelet\Etoc@getnb@token\Etoc@@getnb #1\hspace\etoc@ + \ifEtoc@hyperref + \def\Etoc@tmp##1##2{\Etoc@global\def##2{\hyperlink{#3}{##1}}}% + \expandafter\Etoc@tmp\expandafter{\etocthename}\etocthelinkedname + \ifEtoc@numbered + \expandafter\Etoc@tmp\expandafter{\etocthenumber}\etocthelinkednumber + \else + \Etoc@global\let\etocthelinkednumber\@empty + \fi + \else + \Etoc@global\let\etocthelinkedname \etocthename + \Etoc@global\let\etocthelinkednumber\etocthenumber + \fi + \Etoc@global\expandafter\let\csname etoclink \endcsname \etocthelink + \Etoc@global\expandafter\let\csname etocname \endcsname \etocthename + \Etoc@global\expandafter\let\csname etocnumber \endcsname\etocthenumber + \Etoc@global\expandafter\let\csname etocpage \endcsname \etocthepage + \ifEtoc@hyperref + \Etoc@lxyz@linktoc + \fi +} +\def\Etoc@lxyz@linktoc{% + \ifcase\Hy@linktoc + \or + \Etoc@global\expandafter\let\csname etocname \endcsname\etocthelinkedname + \Etoc@global\expandafter\let\csname etocnumber \endcsname\etocthelinkednumber + \or % page + \Etoc@global\expandafter\let\csname etocpage \endcsname\etocthelinkedpage + \else % all + \Etoc@global\expandafter\let\csname etocname \endcsname\etocthelinkedname + \Etoc@global\expandafter\let\csname etocnumber \endcsname\etocthelinkednumber + \Etoc@global\expandafter\let\csname etocpage \endcsname\etocthelinkedpage + \fi +} +\def\Etoc@@getnb {% + \let\Etoc@next\Etoc@getnb + \ifx\Etoc@getnb@token\@sptoken\let\Etoc@next\Etoc@getnb@nonbr\fi + \ifx\Etoc@getnb@token\bgroup \let\Etoc@next\Etoc@getnb@nonbr\fi + \Etoc@next +} +\def\Etoc@getnb #1{% + \in@{#1}{\numberline\chapternumberline\partnumberline\booknumberline}% + \ifin@ + \let\Etoc@next\Etoc@getnb@nmbrd + \else + \ifnum\Etoc@level=\m@ne + \let\Etoc@next\Etoc@@getit + \else + \let\Etoc@next\Etoc@getnb@nonbr + \fi + \in@{#1}{\nonumberline}% + \ifin@ + \let\Etoc@next\Etoc@getnb@nonumberline + \fi + \fi + \Etoc@next #1% +} +\def\Etoc@getnb@nmbrd #1#2{% + \Etoc@global\Etoc@numberedtrue + \Etoc@global\def\etocthenumber {#2}% + \Etoc@getnb@nmbrd@getname\@empty +}% +\def\Etoc@getnb@nmbrd@getname #1\hspace\etoc@ {% + \Etoc@global\expandafter\def\expandafter\etocthename\expandafter{#1}% +} +\def\Etoc@getnb@nonbr #1\etoc@ {% + \Etoc@global\Etoc@numberedfalse + \Etoc@global\let\etocthenumber \@empty +} +\def\Etoc@getnb@nonumberline #1\hspace\etoc@ {% + \Etoc@global\Etoc@numberedfalse + \Etoc@global\let\etocthenumber \@empty + \Etoc@global\expandafter\def\expandafter\etocthename\expandafter{\@gobble#1}% +} +\def\Etoc@@getit #1\hspace#2{% + \ifx\etoc@#2% + \Etoc@global\Etoc@numberedfalse + \Etoc@global\let\etocthenumber \@empty + \else + \Etoc@global\Etoc@numberedtrue + \Etoc@global\def\etocthenumber {#1}% + \expandafter\Etoc@getit@getname \expandafter\@empty + \fi +} +\def\Etoc@getit@getname #1\hspace\etoc@ {% + \Etoc@global\expandafter\def\expandafter\etocthename\expandafter{#1}% +} +\let\etocthename \@empty +\let\etocthenumber \@empty +\let\etocthepage \@empty +\let\etocthelinkedname \@empty +\let\etocthelinkednumber \@empty +\let\etocthelinkedpage \@empty +\let\etocthelink \@firstofone +\DeclareRobustCommand*{\etocname} {} +\DeclareRobustCommand*{\etocnumber}{} +\DeclareRobustCommand*{\etocpage} {} +\DeclareRobustCommand*{\etoclink} {\@firstofone} +\DeclareRobustCommand*{\etocifnumbered} + {\ifEtoc@numbered\expandafter\@firstoftwo\else\expandafter\@secondoftwo\fi} +\expandafter\let\expandafter\etocxifnumbered\csname etocifnumbered \endcsname +\DeclareRobustCommand*{\etociffirst} + {\ifEtoc@isfirst\expandafter\@firstoftwo\else\expandafter\@secondoftwo\fi} +\expandafter\let\expandafter\etocxiffirst\csname etociffirst \endcsname +\def\Etoc@readtoc {% + \ifeof \Etoc@tf + \else + \read \Etoc@tf to \Etoc@buffer + \Etoc@toctoks=\expandafter\expandafter\expandafter + {\expandafter\the\expandafter\Etoc@toctoks\Etoc@buffer}% + \expandafter\Etoc@readtoc + \fi +} +\Etoc@toctoks {}% (superfluous, but for clarity) +\AtBeginDocument{\IfFileExists{\jobname.toc} + {{\endlinechar=\m@ne + \makeatletter + \newread\Etoc@tf + \openin\Etoc@tf\@filef@und + \Etoc@readtoc + \global\Etoc@toctoks=\expandafter{\the\Etoc@toctoks}% + \closein\Etoc@tf}} + {\typeout{No file \jobname.toc.}}} +\def\Etoc@openouttoc{% + \ifEtoc@hyperref + \ifx\hyper@last\@undefined + \IfFileExists{\jobname .toc} + {\Hy@WarningNoLine + {old toc file detected; run LaTeX again (cheers from `etoc')}% + \global\Etoc@toctoks={}% + } + {}% + \fi + \fi + \if@filesw + \newwrite \tf@toc + \immediate \openout \tf@toc \jobname .toc\relax + \fi + \global\let\Etoc@openouttoc\empty +} +\def\Etoc@toctoc{% + \gdef\Etoc@stackofends{{-3}{}}% + \global\let\Etoc@level\Etoc@minf + \global\let\Etoc@virtualtop\Etoc@minf + \the\Etoc@toctoks + \ifEtoc@notactive + \else + \gdef\Etoc@level{-\thr@@}% + \Etoc@doendsandbegin + \fi +} +\def\Etoc@@startlocaltoc#1#2{% + \ifEtoc@localtoc + \ifnum #1=#2\relax + \global\let\etoclocaltop\Etoc@virtualtop + \Etoc@@startlocaltochook + \etoclocaltableofcontentshook + \ifEtoc@etocstyle + \etocetoclocaltocmaketitle + \fi + \ifx\Etoc@aftertitlehook\@empty + \else + \ifEtoc@localtoctotoc + \ifEtoc@ouroboros + \else + \let\Etoc@tmp\contentsline + \def\contentsline{\let\contentsline\Etoc@tmp\Etoc@gobblethreeorfour}% + \fi + \fi + \fi + \global\Etoc@notactivefalse + \fi + \fi +} +\let\etoc@startlocaltoc\@gobble +\let\Etoc@@startlocaltoc@toc\Etoc@@startlocaltoc +\let\Etoc@@startlocaltochook\@empty +\unless\ifEtoc@deeplevels + \def\etocdivisionnameatlevel#1{% + \ifcase\numexpr#1\relax + \ifdefined\c@chapter chapter\else section\fi% + \or section% + \or subsection% + \or subsubsection% + \or paragraph% + \or subparagraph% + \or empty% + \else\ifnum\numexpr#1<\m@ne + book% + \else + part% + \fi + \fi + } +\else + \def\etocdivisionnameatlevel#1{% + \ifcase\numexpr#1\relax + \ifdefined\c@chapter chapter\else section\fi% + \or section% + \or subsection% + \or subsubsection% + \or subsubsubsection% + \or subsubsubsubsection% + \or subsubsubsubsubsection% + \or subsubsubsubsubsubsection% + \or paragraph% + \or subparagraph% + \else\ifnum\numexpr#1>\z@ + empty% + \else\ifnum\numexpr#1=\m@ne + part% + \else + book% + \fi\fi + \fi + } +\fi +\def\etoclocalheadtotoc#1#2{\addcontentsline{toc}{@#1}{#2}} +\def\etocglobalheadtotoc{\addcontentsline{toc}} +\providecommand*\UseName{\@nameuse} +\def\etocetoclocaltocmaketitle{% + \UseName{\etocdivisionnameatlevel{\etoclocaltop+1}}*{\localcontentsname}% + \if@noskipsec\leavevmode\par\fi + \etociflocaltoctotoc + {\etocifisstarred + {}% star variant, do not add to toc + {\etoclocalheadtotoc + {\etocdivisionnameatlevel{\etoclocaltop+1}}% + {\localcontentsname}% + }% + }% + {}% +}% +\def\localcontentsname {\contentsname}% +\let\etoclocaltableofcontentshook\@empty +\if1\ifEtoc@lof0\fi\ifEtoc@lot0\fi1% +\else +\AtBeginDocument{% + \let\Etoc@originaladdcontentsline\addcontentsline + \def\addcontentsline{\Etoc@hackedaddcontentsline}% +}% +\fi +\ifEtoc@lof + \ifEtoc@lot + \def\Etoc@hackedaddcontentsline#1{% + \expanded{\noexpand\in@{.#1,}}{.lof,.lot,}% + \ifin@\expandafter\Etoc@hackedaddcontentsline@i + \else\expandafter\Etoc@originaladdcontentsline + \fi {#1}} + \else + \def\Etoc@hackedaddcontentsline#1{% + \expanded{\noexpand\in@{.#1,}}{.lof,}% + \ifin@\expandafter\Etoc@hackedaddcontentsline@i + \else\expandafter\Etoc@originaladdcontentsline + \fi {#1}} + \fi +\else + \def\Etoc@hackedaddcontentsline#1{% + \expanded{\noexpand\in@{.#1,}}{.lot,}% + \ifin@\expandafter\Etoc@hackedaddcontentsline@i + \else\expandafter\Etoc@originaladdcontentsline + \fi {#1}} +\fi +\def\Etoc@hackedaddcontentsline@i#1#2#3{% + \expanded{\noexpand\in@{.#1;#2,}}{.lof;figure,.lot;table,}% + \ifin@ + \addtocontents {toc}{% + \protect\contentsline{#2}{#3}{\thepage}{\ifEtoc@hyperref\@currentHref\fi}% + \ifdefined\protected@file@percent\protected@file@percent\fi + }% + \fi + \Etoc@originaladdcontentsline{#1}{#2}{#3}% +} +\unless\ifdefined\expanded + \def\Etoc@hackedaddcontentsline#1{% + {\edef\Etoc@tmp{\noexpand\in@{.#1,}{\ifEtoc@lof.lof,\fi\ifEtoc@lot.lot,\fi}}\expandafter}% + \Etoc@tmp + \ifin@\expandafter\Etoc@hackedaddcontentsline@i + \else\expandafter\Etoc@originaladdcontentsline + \fi {#1}% + } + \def\Etoc@hackedaddcontentsline@i#1#2#3{% + {\edef\Etoc@tmp{\noexpand\in@{.#1;#2,}}\expandafter}% + \Etoc@tmp{.lof;figure,.lot;table,}% + \ifin@ + \addtocontents {toc}{% + \protect\contentsline{#2}{#3}{\thepage}{\ifEtoc@hyperref\@currentHref\fi}% + \ifdefined\protected@file@percent\protected@file@percent\fi + }% + \fi + \Etoc@originaladdcontentsline{#1}{#2}{#3}% + } +\fi +\def\Etoc@@startlocallistof#1#2#3{% + \ifEtoc@localtoc + \ifnum #2=#3\relax + \global\let\etoclocaltop\Etoc@virtualtop + \global\Etoc@notactivefalse + \Etoc@@startlocaltochook + \csname etoclocallistof#1shook\endcsname + \ifEtoc@etocstyle + \csname etocetoclistof#1smaketitle\endcsname + \fi + \fi + \fi +} +\def\Etoc@@startlocallistof@setlevels#1{% + \ifnum\etoclocaltop<\z@ + \expandafter\let\csname Etoc@#1@@\endcsname\@ne + \else + \expandafter\let\csname Etoc@#1@@\expandafter\endcsname + \csname Etoc@\the\numexpr\etoclocaltop+\@ne @@\endcsname + \fi + \def\Etoc@do##1{% + \ifnum\etoclevel{##1}>\etoclocaltop + \expandafter\let\csname Etoc@##1@@\endcsname\Etoc@maxlevel + \fi}% + \Etoc@dolevels +} +\def\etoclocallistoffigureshook{\etocstandardlines} +\def\etoclocallistoftableshook {\etocstandardlines} +\def\locallistfigurename{\listfigurename} +\def\locallisttablename {\listtablename} +\def\etocetoclistoffiguresmaketitle{% + \UseName{\etocdivisionnameatlevel{\etoclocaltop+1}}*{\locallistfigurename}% + \ifnum\etoclocaltop>\tw@\mbox{}\par\fi + \etociflocalloftotoc + {\etocifisstarred + {}% star variant, do not add to toc + {\etoclocalheadtotoc + {\etocdivisionnameatlevel{\etoclocaltop+1}}% + {\locallistfigurename}% + }% + }% + {}% +}% +\def\etocetoclistoftablesmaketitle{% + \UseName{\etocdivisionnameatlevel{\etoclocaltop+1}}*{\locallisttablename}% + \ifnum\etoclocaltop>\tw@\mbox{}\par\fi + \etociflocallottotoc + {\etocifisstarred + {}% star variant, do not add to toc + {\etoclocalheadtotoc + {\etocdivisionnameatlevel{\etoclocaltop+1}}% + {\locallisttablename}% + }% + }% + {}% +}% +\let\Etoc@listofreset\@empty +\ifEtoc@lof + \def\locallistoffigures{% + \def\Etoc@listofreset{% + \let\Etoc@currext\Etoc@tocext + \let\Etoc@@startlocaltoc\Etoc@@startlocaltoc@toc + \let\Etoc@@startlocaltochook\@empty + \let\Etoc@listofreset\@empty + \let\Etoc@listofhook\@empty + }% + \let\Etoc@currext\Etoc@lofext + \def\Etoc@@startlocaltoc{\Etoc@@startlocallistof{figure}}% + \def\Etoc@@startlocaltochook{\Etoc@@startlocallistof@setlevels{figure}}% + \def\Etoc@listofhook{% + \def\Etoc@do####1{% + \expandafter\let\csname Etoc@@####1@@\endcsname\Etoc@maxlevel + }% + \Etoc@dolevels + }% + \localtableofcontents + } +\else + \def\locallistoffigures{% + \PackageError{etoc}{% + \string\locallistoffigures \on@line\space but\MessageBreak + package was loaded without `lof' option}% + {Try again with \string\usepackage[lof]{etoc}}% + } +\fi +\ifEtoc@lot + \def\locallistoftables{% + \def\Etoc@listofreset{% + \let\Etoc@currext\Etoc@tocext + \let\Etoc@@startlocaltoc\Etoc@@startlocaltoc@toc + \let\Etoc@@startlocaltochook\@empty + \let\Etoc@listofreset\@empty + \let\Etoc@listofhook\@empty + }% + \let\Etoc@currext\Etoc@lotext + \def\Etoc@@startlocaltoc{\Etoc@@startlocallistof{table}}% + \def\Etoc@@startlocaltochook{\Etoc@@startlocallistof@setlevels{table}}% + \def\Etoc@listofhook{% + \def\Etoc@do####1{% + \expandafter\let\csname Etoc@@####1@@\endcsname\Etoc@maxlevel + }% + \Etoc@dolevels + }% + \localtableofcontents + } +\else + \def\locallistoftables{% + \PackageError{etoc}{% + \string\locallistoftable \on@line\space but\MessageBreak + package was loaded without `lot' option}% + {Try again with \string\usepackage[lot]{etoc}}% + } +\fi +\def\Etoc@checkifempty {% + \global\Etoc@isemptytoctrue + \global\Etoc@stoptocfalse + \global\let\Etoc@level\Etoc@minf + \global\let\Etoc@virtualtop\Etoc@minf + \gdef\Etoc@stackofends{{-3}{}}% + \begingroup + \ifEtoc@localtoc + \def\etoc@startlocaltoc##1{% + \ifnum##1=\Etoc@tocid\relax + \global\let\etoclocaltop\Etoc@virtualtop + \Etoc@@startlocaltochook + \global\Etoc@notactivefalse + \fi + }% + \let\contentsline\Etoc@testingcontentslinelocal + \else + \let\contentsline\Etoc@testingcontentsline + \fi + \Etoc@storetocdepth + \let\Etoc@setlocaltop@doendsandbegin\@empty + \the\Etoc@toctoks + \Etoc@restoretocdepth + \endgroup +} +\DeclareRobustCommand*\etocifwasempty + {\ifEtoc@isemptytoc\expandafter\@firstoftwo\else\expandafter\@secondoftwo\fi } +\expandafter\let\expandafter\etocxifwasempty\csname etocifwasempty \endcsname +\def\Etoc@testingcontentslinelocal #1{% + \ifEtoc@stoptoc + \else + \ifnum\csname Etoc@#1@@\endcsname=\Etoc@maxlevel + \else + \global\expandafter\let\expandafter\Etoc@level\csname Etoc@#1@@\endcsname + \if @\@car#1\@nil\else\global\let\Etoc@virtualtop\Etoc@level\fi + \ifEtoc@notactive + \else + \ifnum\Etoc@level>\etoclocaltop + \unless\ifnum\Etoc@level>\c@tocdepth + \global\Etoc@isemptytocfalse + \global\Etoc@stoptoctrue + \fi + \else + \global\Etoc@stoptoctrue + \fi + \fi + \fi + \fi + \Etoc@gobblethreeorfour{}% +} +\def\Etoc@testingcontentsline #1{% + \ifEtoc@stoptoc + \else + \ifnum\csname Etoc@#1@@\endcsname=\Etoc@maxlevel + \else + \unless\ifnum\csname Etoc@#1@@\endcsname>\c@tocdepth + \global\Etoc@isemptytocfalse + \global\Etoc@stoptoctrue + \fi + \fi + \fi + \Etoc@gobblethreeorfour{}% +} +\def\Etoc@localtableofcontents#1{% + \gdef\etoclocaltop{-\@m}% + \Etoc@localtoctrue + \global\Etoc@isemptytocfalse + \edef\Etoc@tocid{#1}% + \ifnum\Etoc@tocid<\@ne + \setbox0\hbox{\ref{Unknown toc ref \@secondoftwo#1. \space Rerun LaTeX}}% + \global\Etoc@stoptoctrue + \gdef\etoclocaltop{-\thr@@}% + \Etoc@tableofcontents + \expandafter\Etoc@gobtoetoc@ + \fi + \global\Etoc@notactivetrue + \ifEtoc@checksemptiness + \Etoc@checkifempty + \fi + \ifEtoc@isemptytoc + \ifEtoc@notactive + \setbox0\hbox{\ref{Unknown toc ID \number\Etoc@tocid. \space Rerun LaTeX}}% + \global\Etoc@isemptytocfalse + \global\Etoc@stoptoctrue + \gdef\etoclocaltop{-\thr@@}% + \Etoc@tableofcontents + \expandafter\expandafter\expandafter\Etoc@gobtoetoc@ + \fi + \else + \global\Etoc@stoptocfalse + \global\Etoc@notactivetrue + \edef\etoc@startlocaltoc##1% + {\noexpand\Etoc@@startlocaltoc{##1}{\Etoc@tocid}}% + \Etoc@tableofcontents + \fi + \@gobble\etoc@ + \endgroup\ifEtoc@mustclosegroup\endgroup\fi + \Etoc@tocdepthreset + \Etoc@listofreset + \etocaftertochook +}% \Etoc@localtableofcontents +\def\Etoc@getref #1{% + \@ifundefined{r@#1} + {0} + {\expandafter\Etoc@getref@i\romannumeral-`0% + \expandafter\expandafter\expandafter + \@car\csname r@#1\endcsname0\@nil\@etoc + }% +} +\def\Etoc@getref@i#1#2\@etoc{\ifnum9<1\string#1 #1#2\else 0\fi} +\def\Etoc@ref#1{\Etoc@localtableofcontents{\Etoc@getref{#1}}} +\def\Etoc@label#1{\label{#1}\futurelet\Etoc@nexttoken\Etoc@t@bleofcontents} +\@firstofone{\def\Etoc@again} {\futurelet\Etoc@nexttoken\Etoc@t@bleofcontents} +\def\Etoc@dothis #1#2\etoc@ {\fi #1} +\def\Etoc@t@bleofcontents{% + \gdef\etoclocaltop{-\@M}% + \ifx\Etoc@nexttoken\label\Etoc@dothis{\expandafter\Etoc@label\@gobble}\fi + \ifx\Etoc@nexttoken\@sptoken\Etoc@dothis{\Etoc@again}\fi + \ifx\Etoc@nexttoken\ref\Etoc@dothis{\expandafter\Etoc@ref\@gobble}\fi + \ifEtoc@tocwithid\Etoc@dothis{\Etoc@localtableofcontents{\c@etoc@tocid}}\fi + \global\Etoc@isemptytocfalse + \ifEtoc@checksemptiness\Etoc@checkifempty\fi + \ifEtoc@isemptytoc + \ifEtoc@notocifnotoc + \expandafter\expandafter\expandafter\@gobble + \fi + \fi + \Etoc@tableofcontents + \endgroup + \ifEtoc@mustclosegroup\endgroup\fi + \Etoc@tocdepthreset + \Etoc@listofreset + \etocaftertochook + \@gobble\etoc@ + }% \Etoc@t@bleofcontents +\def\Etoc@table@fcontents{% + \refstepcounter{etoc@tocid}% + \Etoc@tocwithidfalse + \futurelet\Etoc@nexttoken\Etoc@t@bleofcontents +} +\def\Etoc@localtable@fcontents{% + \refstepcounter{etoc@tocid}% + \addtocontents{toc}{\string\etoc@startlocaltoc{\the\c@etoc@tocid}}% + \Etoc@tocwithidtrue + \futurelet\Etoc@nexttoken\Etoc@t@bleofcontents +} +\def\etoctableofcontents{% + \Etoc@openouttoc + \Etoc@tocdepthset + \begingroup + \@ifstar + {\let\Etoc@aftertitlehook\@empty\Etoc@table@fcontents} + {\def\Etoc@aftertitlehook{\etocaftertitlehook}\Etoc@table@fcontents}% +}% \etoctableofcontents +\def\etocifisstarred{\ifx\Etoc@aftertitlehook\@empty + \expandafter\@firstoftwo\else + \expandafter\@secondoftwo + \fi} +\let\etocoriginaltableofcontents\tableofcontents +\let\tableofcontents\etoctableofcontents +\let\Etoc@listofhook\@empty +\newcommand*\localtableofcontents{% + \Etoc@openouttoc + \Etoc@tocdepthset + \begingroup + \Etoc@listofhook + \@ifstar + {\let\Etoc@aftertitlehook\@empty\Etoc@localtable@fcontents} + {\def\Etoc@aftertitlehook{\etocaftertitlehook}\Etoc@localtable@fcontents}% +}% \localtableofcontents +\newcommand*\localtableofcontentswithrelativedepth[1]{% + \def\Etoc@@startlocaltochook{% + \global\c@tocdepth\numexpr\etoclocaltop+#1\relax + }% + \def\Etoc@listofreset{\let\Etoc@@startlocaltochook\@empty + \let\Etoc@listofreset\@empty}% + \localtableofcontents +}% \localtableofcontentswithrelativedepth +\newcommand\etocsettocstyle[2]{% + \Etoc@etocstylefalse + \Etoc@classstylefalse + \def\Etoc@tableofcontents@user@before{#1}% + \def\Etoc@tableofcontents@user@after {#2}% +}% +\def\etocstoretocstyleinto#1{% +%% \@ifdefinable#1{% + \edef#1{\noexpand\Etoc@etocstylefalse\noexpand\Etoc@classstylefalse + \def\noexpand\Etoc@tableofcontents@user@before{% + \unexpanded\expandafter{\Etoc@tableofcontents@user@before}% + }% + \def\noexpand\Etoc@tableofcontents@user@after{% + \unexpanded\expandafter{\Etoc@tableofcontents@user@after}% + }% + }% +%% }% +}% +\def\Etoc@tableofcontents {% + \Etoc@tableofcontents@etoc@before + \ifEtoc@localtoc\ifEtoc@etocstyle\expandafter\expandafter\expandafter\@gobble\fi\fi + \Etoc@tableofcontents@user@before + \Etoc@tableofcontents@contents + \ifEtoc@localtoc\ifEtoc@etocstyle\expandafter\expandafter\expandafter\@gobble\fi\fi + \Etoc@tableofcontents@user@after + \Etoc@tableofcontents@etoc@after + \@gobble\etoc@ +} +\def\Etoc@tableofcontents@etoc@before{% + \ifnum\c@tocdepth>\Etoc@minf + \else + \expandafter\Etoc@gobtoetoc@ + \fi + \Etoc@par + \Etoc@beforetitlehook + \etocbeforetitlehook + \Etoc@storetocdepth + \let\Etoc@savedcontentsline\contentsline + \let\contentsline\Etoc@etoccontentsline + \ifEtoc@standardlines + \else + \def\Etoc@do##1{% + \expandafter\def\csname etocsaved##1tocline\endcsname + {\PackageError{etoc}{% + \expandafter\string\csname etocsaved##1tocline\endcsname\space + has been deprecated\MessageBreak + at 1.1a and is removed at 1.2.\MessageBreak + Use \expandafter\string\csname l@##1\endcsname\space directly.\MessageBreak + Reported \on@line}% + {I will use \expandafter\string + \csname l@##1\endcsname\space myself for this time.% + }% + \csname l@##1\endcsname + }% + }% + \Etoc@dolevels + \fi +}% +\def\Etoc@tableofcontents@contents{% + \Etoc@tocdepthset + \ifEtoc@parskip\parskip\z@skip\fi + \Etoc@aftertitlehook + \gdef\etoclocaltop{-\thr@@}% + \Etoc@toctoc + \etocaftercontentshook +}% +\def\Etoc@tableofcontents@etoc@after{% + \@nobreakfalse + \Etoc@restoretocdepth + \ifx\Etoc@global\global + \@ifundefined{tof@finish} + {} + {\ifx\tof@finish\@empty + \else + \global\let\contentsline\Etoc@savedcontentsline + \fi + }% + \fi +} +\def\etocsetstyle#1{\ifcsname Etoc@#1@@\endcsname + \expandafter\Etoc@setstyle@a + \else + \expandafter\Etoc@setstyle@error + \fi {#1}% +} +\def\Etoc@setstyle@error #1{% + \PackageWarning{etoc}{`#1' is unknown to etoc. \space Did you\MessageBreak + forget some \string\etocsetlevel{#1}{}?\MessageBreak + Reported}% + \@gobblefour +} +\def\Etoc@setstyle@a #1{% + \edef\Etoc@tmp{\the\numexpr\csname Etoc@#1@@\endcsname}% + \if1\unless\ifnum\Etoc@tmp<\Etoc@maxlevel 0\fi + \unless\ifnum\Etoc@tmp>\Etoc@minf 0\fi1% + \Etoc@standardlinesfalse + \expandafter\Etoc@setstyle@b\expandafter\Etoc@tmp + \else + \ifnum\Etoc@tmp=\Etoc@maxlevel + \in@{.#1,}{.figure,.table,}% + \ifin@ + \PackageWarning{etoc} + {You can not use \string\etocsetstyle\space with `#1'.\MessageBreak + Check the package documentation (in particular about\MessageBreak + \string\etoclocallistoffigureshook/\string\etoclocallistoftableshook)% + \MessageBreak on how to customize + figure and table entries in local\MessageBreak lists. Reported}% + \else + \PackageInfo{etoc} + {Attempt to set the style of `#1',\MessageBreak + whose level is currently the maximal one \etocthemaxlevel,\MessageBreak + which is never displayed. \space This will be ignored\MessageBreak + but note that we do quit compatibility mode.\MessageBreak + Reported}% + \Etoc@standardlinesfalse + \fi + \else + \PackageWarning{etoc}{This should not happen. Reported}% + \fi + \expandafter\@gobblefour + \fi +} +\long\def\Etoc@setstyle@b#1#2#3#4#5{% + \expandafter\def\csname Etoc@begin@#1\endcsname {#2}% + \expandafter\def\csname Etoc@prefix@#1\endcsname {#3}% + \expandafter\def\csname Etoc@contents@#1\endcsname {#4}% + \expandafter\def\csname Etoc@end@#1\endcsname {#5}% +} +\def\Etoc@setstyle@e#1{% + \expandafter\let\csname Etoc@begin@#1\endcsname \@empty + \expandafter\let\csname Etoc@prefix@#1\endcsname \@empty + \expandafter\let\csname Etoc@contents@#1\endcsname \@empty + \expandafter\let\csname Etoc@end@#1\endcsname \@empty +} +\def\Etoc@storelines@a#1{% + \noexpand\Etoc@setstyle@b{#1}% + {\expandafter\Etoc@expandonce\csname Etoc@begin@#1\endcsname}% + {\expandafter\Etoc@expandonce\csname Etoc@prefix@#1\endcsname}% + {\expandafter\Etoc@expandonce\csname Etoc@contents@#1\endcsname}% + {\expandafter\Etoc@expandonce\csname Etoc@end@#1\endcsname}% +} +\def\Etoc@expandonce#1{\unexpanded\expandafter{#1}} +\def\etocstorelinestylesinto#1{% + \edef#1{\Etoc@storelines@a{-2}\Etoc@storelines@a{-1}\Etoc@storelines@a{0}% + \Etoc@storelines@a {1}\Etoc@storelines@a {2}\Etoc@storelines@a{3}% + \Etoc@storelines@a {4}\Etoc@storelines@a {5}% + \ifEtoc@deeplevels + \Etoc@storelines@a{6}\Etoc@storelines@a{7}\Etoc@storelines@a{8}% + \Etoc@storelines@a{9}\Etoc@storelines@a{10}\Etoc@storelines@a{11}% + \fi + }% +} +\def\etocstorethislinestyleinto#1#2{% + \edef#2{\expandafter\Etoc@storelines@a\expandafter{\number\etoclevel{#1}}}% +}% +\def\etocfontminustwo {\normalfont \LARGE \bfseries} +\def\etocfontminusone {\normalfont \large \bfseries} +\def\etocfontzero {\normalfont \large \bfseries} +\def\etocfontone {\normalfont \normalsize \bfseries} +\def\etocfonttwo {\normalfont \normalsize} +\def\etocfontthree {\normalfont \footnotesize} +\def\etocsepminustwo {4ex \@plus .5ex \@minus .5ex} +\def\etocsepminusone {4ex \@plus .5ex \@minus .5ex} +\def\etocsepzero {2.5ex \@plus .4ex \@minus .4ex} +\def\etocsepone {1.5ex \@plus .3ex \@minus .3ex} +\def\etocseptwo {.5ex \@plus .1ex \@minus .1ex} +\def\etocsepthree {.25ex \@plus .05ex \@minus .05ex} +\def\etocbaselinespreadminustwo {1} +\def\etocbaselinespreadminusone {1} +\def\etocbaselinespreadzero {1} +\def\etocbaselinespreadone {1} +\def\etocbaselinespreadtwo {1} +\def\etocbaselinespreadthree {.9} +\def\etocminustwoleftmargin {1.5em plus 0.5fil} +\def\etocminustworightmargin {1.5em plus -0.5fil} +\def\etocminusoneleftmargin {1em} +\def\etocminusonerightmargin {1em} +\def\etoctoclineleaders + {\hbox{\normalfont\normalsize\hb@xt@2ex {\hss.\hss}}} +\def\etocabbrevpagename {p.~} +\def\etocpartname {Part} +\def\etocbookname {Book} +\def\etocdefaultlines{% + \Etoc@standardlinesfalse + \etocdefaultlines@setbook + \etocdefaultlines@setpart + \etocdefaultlines@setchapter + \etocdefaultlines@setsection + \etocdefaultlines@setsubsection + \etocdefaultlines@setsubsubsection + \etocdefaultlines@setdeeperones +} +\def\etocnoprotrusion{\leavevmode\kern-\p@\kern\p@} +\@ifclassloaded{memoir}{% + \def\etocdefaultlines@setbook{% + \Etoc@setstyle@b + {-2}% + {\addpenalty\@M\etocskipfirstprefix} + {\addpenalty\@secpenalty} + {\begingroup + \etocfontminustwo + \addvspace{\etocsepminustwo}% + \parindent \z@ + \leftskip \etocminustwoleftmargin + \rightskip \etocminustworightmargin + \parfillskip \@flushglue + \vbox{\etocifnumbered{\etoclink{\etocbookname\enspace\etocthenumber:\quad}}{}% + \etocname + \baselineskip\etocbaselinespreadminustwo\baselineskip + \par}% + \addpenalty\@M\addvspace{\etocsepminusone}% + \endgroup} + {}% + } + }{\let\etocdefaultlines@setbook\@empty} +\def\etocdefaultlines@setpart{% +\Etoc@setstyle@b + {-1}% + {\addpenalty\@M\etocskipfirstprefix} + {\addpenalty\@secpenalty} + {\begingroup + \etocfontminusone + \addvspace{\etocsepminusone}% + \parindent \z@ + \leftskip \etocminusoneleftmargin + \rightskip \etocminusonerightmargin + \parfillskip \@flushglue + \vbox{\etocifnumbered{\etoclink{\etocpartname\enspace\etocthenumber.\quad}}{}% + \etocname + \baselineskip\etocbaselinespreadminusone\baselineskip + \par}% + \addpenalty\@M\addvspace{\etocsepzero}% + \endgroup} + {}% +} +\def\etocdefaultlines@setchapter{% +\Etoc@setstyle@b + {0}% + {\addpenalty\@M\etocskipfirstprefix} + {\addpenalty\@itempenalty} + {\begingroup + \etocfontzero + \addvspace{\etocsepzero}% + \parindent \z@ \parfillskip \@flushglue + \vbox{\etocifnumbered{\etocnumber.\enspace}{}\etocname + \baselineskip\etocbaselinespreadzero\baselineskip + \par}% + \endgroup} + {\addpenalty{-\@highpenalty}\addvspace{\etocsepminusone}}% +} +\def\etocdefaultlines@setsection{% +\Etoc@setstyle@b + {1}% + {\addpenalty\@M\etocskipfirstprefix} + {\addpenalty\@itempenalty} + {\begingroup + \etocfontone + \addvspace{\etocsepone}% + \parindent \z@ \parfillskip \z@ + \setbox\z@\vbox{\parfillskip\@flushglue + \etocname\par + \setbox\tw@\lastbox + \global\setbox\@ne\hbox{\unhbox\tw@\ }}% + \dimen\z@=\wd\@ne + \setbox\z@=\etoctoclineleaders + \advance\dimen\z@\wd\z@ + \etocifnumbered + {\setbox\tw@\hbox{\etocnumber, \etocabbrevpagename\etocpage\etocnoprotrusion}} + {\setbox\tw@\hbox{\etocabbrevpagename\etocpage\etocnoprotrusion}}% + \advance\dimen\z@\wd\tw@ + \ifdim\dimen\z@ < \linewidth + \vbox{\etocname~% + \leaders\box\z@\hfil\box\tw@ + \baselineskip\etocbaselinespreadone\baselineskip + \par}% + \else + \vbox{\etocname~% + \leaders\copy\z@\hfil\break + \hbox{}\leaders\box\z@\hfil\box\tw@ + \baselineskip\etocbaselinespreadone\baselineskip + \par}% + \fi + \endgroup} + {\addpenalty\@secpenalty\addvspace{\etocsepzero}}% +} +\def\etocdefaultlines@setsubsection{% +\Etoc@setstyle@b + {2}% + {\addpenalty\@medpenalty\etocskipfirstprefix} + {\addpenalty\@itempenalty} + {\begingroup + \etocfonttwo + \addvspace{\etocseptwo}% + \parindent \z@ \parfillskip \z@ + \setbox\z@\vbox{\parfillskip\@flushglue + \etocname\par\setbox\tw@\lastbox + \global\setbox\@ne\hbox{\unhbox\tw@}}% + \dimen\z@=\wd\@ne + \setbox\z@=\etoctoclineleaders + \advance\dimen\z@\wd\z@ + \etocifnumbered + {\setbox\tw@\hbox{\etocnumber, \etocabbrevpagename\etocpage\etocnoprotrusion}} + {\setbox\tw@\hbox{\etocabbrevpagename\etocpage\etocnoprotrusion}}% + \advance\dimen\z@\wd\tw@ + \ifdim\dimen\z@ < \linewidth + \vbox{\etocname~% + \leaders\box\z@\hfil\box\tw@ + \baselineskip\etocbaselinespreadtwo\baselineskip + \par}% + \else + \vbox{\etocname~% + \leaders\copy\z@\hfil\break + \hbox{}\leaders\box\z@\hfil\box\tw@ + \baselineskip\etocbaselinespreadtwo\baselineskip + \par}% + \fi + \endgroup} + {\addpenalty\@secpenalty\addvspace{\etocsepone}}% +} +\def\etocdefaultlines@setsubsubsection{% +\Etoc@setstyle@b + {3}% + {\addpenalty\@M + \etocfontthree + \vspace{\etocsepthree}% + \noindent + \etocskipfirstprefix} + {\allowbreak\,--\,} + {\etocname} + {.\hfil + \begingroup + \baselineskip\etocbaselinespreadthree\baselineskip + \par + \endgroup + \addpenalty{-\@highpenalty}} +} +\def\etocdefaultlines@setdeeperones{% +\Etoc@setstyle@e{4}% +\Etoc@setstyle@e{5}% +\ifEtoc@deeplevels + \Etoc@setstyle@e{6}% + \Etoc@setstyle@e{7}% + \Etoc@setstyle@e{8}% + \Etoc@setstyle@e{9}% + \Etoc@setstyle@e{10}% + \Etoc@setstyle@e{11}% +\fi +} +\def\etocabovetocskip{3.5ex \@plus 1ex \@minus .2ex} +\def\etocbelowtocskip{3.5ex \@plus 1ex \@minus .2ex} +\def\etoccolumnsep{2em} +\def\etocmulticolsep{0ex} +\def\etocmulticolpretolerance{-1} +\def\etocmulticoltolerance{200} +\def\etocdefaultnbcol{2} +\def\etocinnertopsep{2ex} +\newcommand\etocmulticolstyle[2][\etocdefaultnbcol]{% +\etocsettocstyle + {\let\etocoldpar\par + \addvspace{\etocabovetocskip}% + \ifnum #1>\@ne + \expandafter\@firstoftwo + \else \expandafter\@secondoftwo + \fi + {\multicolpretolerance\etocmulticolpretolerance + \multicoltolerance\etocmulticoltolerance + \setlength{\columnsep}{\etoccolumnsep}% + \setlength{\multicolsep}{\etocmulticolsep}% + \begin{multicols}{#1}[#2\etocoldpar\addvspace{\etocinnertopsep}]} + {#2\ifvmode\else\begingroup\interlinepenalty\@M\parskip\z@skip + \@@par\endgroup + \fi + \nobreak\addvspace{\etocinnertopsep}% + \pretolerance\etocmulticolpretolerance + \tolerance\etocmulticoltolerance}% + }% + {\ifnum #1>\@ne + \expandafter\@firstofone + \else \expandafter\@gobble + \fi + {\end{multicols}}% + \addvspace{\etocbelowtocskip}}% +} +\def\etocinnerbottomsep{3.5ex} +\def\etocinnerleftsep{2em} +\def\etocinnerrightsep{2em} +\def\etoctoprule{\hrule} +\def\etocleftrule{\vrule} +\def\etocrightrule{\vrule} +\def\etocbottomrule{\hrule} +\def\etoctoprulecolorcmd{\relax} +\def\etocbottomrulecolorcmd{\relax} +\def\etocleftrulecolorcmd{\relax} +\def\etocrightrulecolorcmd{\relax} +\def\etoc@ruledheading #1{% + \hb@xt@\linewidth{\color@begingroup + \hss #1\hss\hskip-\linewidth + \etoctoprulecolorcmd\leaders\etoctoprule\hss + \phantom{#1}% + \leaders\etoctoprule\hss\color@endgroup}% + \nointerlineskip\nobreak\vskip\etocinnertopsep} +\newcommand*\etocruledstyle[2][\etocdefaultnbcol]{% +\etocsettocstyle + {\addvspace{\etocabovetocskip}% + \ifnum #1>\@ne + \expandafter\@firstoftwo + \else \expandafter\@secondoftwo + \fi + {\multicolpretolerance\etocmulticolpretolerance + \multicoltolerance\etocmulticoltolerance + \setlength{\columnsep}{\etoccolumnsep}% + \setlength{\multicolsep}{\etocmulticolsep}% + \begin{multicols}{#1}[\etoc@ruledheading{#2}]} + {\etoc@ruledheading{#2}% + \pretolerance\etocmulticolpretolerance + \tolerance\etocmulticoltolerance}} + {\ifnum #1>\@ne\expandafter\@firstofone + \else \expandafter\@gobble + \fi + {\end{multicols}}% + \addvspace{\etocbelowtocskip}}} +\def\etocframedmphook{\relax} +\long\def\etocbkgcolorcmd{\relax} +\long\def\Etoc@relax{\relax} +\newbox\etoc@framed@titlebox +\newbox\etoc@framed@contentsbox +\newcommand*\etocframedstyle[2][\etocdefaultnbcol]{% +\etocsettocstyle{% + \addvspace{\etocabovetocskip}% + \sbox\z@{#2}% + \dimen\z@\dp\z@ + \ifdim\wd\z@<\linewidth \dp\z@\z@ \else \dimen\z@\z@ \fi + \setbox\etoc@framed@titlebox=\hb@xt@\linewidth{\color@begingroup + \hss + \ifx\etocbkgcolorcmd\Etoc@relax + \else + \sbox\tw@{\color{white}% + \vrule\@width\wd\z@\@height\ht\z@\@depth\dimen\z@}% + \ifdim\wd\z@<\linewidth \dp\tw@\z@\fi + \box\tw@ + \hskip-\wd\z@ + \fi + \copy\z@ + \hss + \hskip-\linewidth + \etoctoprulecolorcmd\leaders\etoctoprule\hss + \hskip\wd\z@ + \etoctoprulecolorcmd\leaders\etoctoprule\hss\color@endgroup}% + \setbox\z@\hbox{\etocleftrule\etocrightrule}% + \dimen\tw@\linewidth\advance\dimen\tw@-\wd\z@ + \advance\dimen\tw@-\etocinnerleftsep + \advance\dimen\tw@-\etocinnerrightsep + \setbox\etoc@framed@contentsbox=\vbox\bgroup + \hsize\dimen\tw@ + \kern\dimen\z@ + \vskip\etocinnertopsep + \hbox\bgroup + \begin{minipage}{\hsize}% + \etocframedmphook + \ifnum #1>\@ne + \expandafter\@firstoftwo + \else \expandafter\@secondoftwo + \fi + {\multicolpretolerance\etocmulticolpretolerance + \multicoltolerance\etocmulticoltolerance + \setlength{\columnsep}{\etoccolumnsep}% + \setlength{\multicolsep}{\etocmulticolsep}% + \begin{multicols}{#1}} + {\pretolerance\etocmulticolpretolerance + \tolerance\etocmulticoltolerance}} + {\ifnum #1>\@ne\expandafter\@firstofone + \else \expandafter\@gobble + \fi + {\end{multicols}\unskip }% + \end{minipage}% + \egroup + \vskip\etocinnerbottomsep + \egroup + \vbox{\hsize\linewidth + \ifx\etocbkgcolorcmd\Etoc@relax + \else + \kern\ht\etoc@framed@titlebox + \kern\dp\etoc@framed@titlebox + \hb@xt@\linewidth{\color@begingroup + \etocleftrulecolorcmd\etocleftrule + \etocbkgcolorcmd + \leaders\vrule + \@height\ht\etoc@framed@contentsbox + \@depth\dp\etoc@framed@contentsbox + \hss + \etocrightrulecolorcmd\etocrightrule + \color@endgroup}\nointerlineskip + \vskip-\dp\etoc@framed@contentsbox + \vskip-\ht\etoc@framed@contentsbox + \vskip-\dp\etoc@framed@titlebox + \vskip-\ht\etoc@framed@titlebox + \fi + \box\etoc@framed@titlebox\nointerlineskip + \hb@xt@\linewidth{\color@begingroup + {\etocleftrulecolorcmd\etocleftrule}% + \hss\box\etoc@framed@contentsbox\hss + \etocrightrulecolorcmd\etocrightrule\color@endgroup} + \nointerlineskip + \vskip\ht\etoc@framed@contentsbox + \vskip\dp\etoc@framed@contentsbox + \hb@xt@\linewidth{\color@begingroup\etocbottomrulecolorcmd + \leaders\etocbottomrule\hss\color@endgroup}} + \addvspace{\etocbelowtocskip}}} +\newcommand\etoc@multicoltoc[2][\etocdefaultnbcol]{% + \etocmulticolstyle[#1]{#2}% + \tableofcontents} +\newcommand\etoc@multicoltoci[2][\etocdefaultnbcol]{% + \etocmulticolstyle[#1]{#2}% + \tableofcontents*} +\newcommand\etoc@local@multicoltoc[2][\etocdefaultnbcol]{% + \etocmulticolstyle[#1]{#2}% + \localtableofcontents} +\newcommand\etoc@local@multicoltoci[2][\etocdefaultnbcol]{% + \etocmulticolstyle[#1]{#2}% + \localtableofcontents*} +\newcommand*\etoc@ruledtoc[2][\etocdefaultnbcol]{% + \etocruledstyle[#1]{#2}% + \tableofcontents} +\newcommand*\etoc@ruledtoci[2][\etocdefaultnbcol]{% + \etocruledstyle[#1]{#2}% + \tableofcontents*} +\newcommand*\etoc@local@ruledtoc[2][\etocdefaultnbcol]{% + \etocruledstyle[#1]{#2}% + \localtableofcontents} +\newcommand*\etoc@local@ruledtoci[2][\etocdefaultnbcol]{% + \etocruledstyle[#1]{#2}% + \localtableofcontents*} +\newcommand*\etoc@framedtoc[2][\etocdefaultnbcol]{% + \etocframedstyle[#1]{#2}% + \tableofcontents} +\newcommand*\etoc@framedtoci[2][\etocdefaultnbcol]{% + \etocframedstyle[#1]{#2}% + \tableofcontents*} +\newcommand*\etoc@local@framedtoc[2][\etocdefaultnbcol]{% + \etocframedstyle[#1]{#2}% + \localtableofcontents} +\newcommand*\etoc@local@framedtoci[2][\etocdefaultnbcol]{% + \etocframedstyle[#1]{#2}% + \localtableofcontents*} +\def\etocmulticol{\begingroup + \Etoc@mustclosegrouptrue + \@ifstar + {\etoc@multicoltoci} + {\etoc@multicoltoc}} +\def\etocruled{\begingroup + \Etoc@mustclosegrouptrue + \@ifstar + {\etoc@ruledtoci} + {\etoc@ruledtoc}} +\def\etocframed{\begingroup + \Etoc@mustclosegrouptrue + \@ifstar + {\etoc@framedtoci} + {\etoc@framedtoc}} +\def\etoclocalmulticol{\begingroup + \Etoc@mustclosegrouptrue + \@ifstar + {\etoc@local@multicoltoci} + {\etoc@local@multicoltoc}} +\def\etoclocalruled{\begingroup + \Etoc@mustclosegrouptrue + \@ifstar + {\etoc@local@ruledtoci} + {\etoc@local@ruledtoc}} +\def\etoclocalframed{\begingroup + \Etoc@mustclosegrouptrue + \@ifstar + {\etoc@local@framedtoci} + {\etoc@local@framedtoc}} +\def\etocmemoirtoctotocfmt #1#2{% + \PackageWarning{etoc} + {\string\etocmemoirtoctotocfmt\space is deprecated.\MessageBreak + Use in its place \string\etocsettoclineforclasstoc,\MessageBreak + and \string\etocsettoclineforclasslistof{toc} (or {lof}, {lot}). + I will do this now.\MessageBreak + Reported}% + \etocsettoclineforclasstoc{#1}{#2}% + \etocsettoclineforclasslistof{toc}{#1}{#2}% +} +\def\etocsettoclineforclasstoc #1#2{% + \def\etocclassmaintocaddtotoc{\etocglobalheadtotoc{#1}{#2}}% +} +\def\etocsettoclineforclasslistof #1#2#3{% + \@namedef{etocclasslocal#1addtotoc}{\etoclocalheadtotoc{#2}{#3}}% +} +\let\etocclasslocaltocaddtotoc\@empty +\let\etocclasslocallofaddtotoc\@empty +\let\etocclasslocallotaddtotoc\@empty +\ifdefined\c@chapter + \def\etocclasslocaltocmaketitle{\section*{\localcontentsname}} + \def\etocclasslocallofmaketitle{\section*{\locallistfigurename}} + \def\etocclasslocallotmaketitle{\section*{\locallisttablename}} + \etocsettoclineforclasstoc {chapter}{\contentsname} + \etocsettoclineforclasslistof{toc}{section}{\localcontentsname} + \etocsettoclineforclasslistof{lof}{section}{\locallistfigurename} + \etocsettoclineforclasslistof{lot}{section}{\locallisttablename} +\else + \def\etocclasslocaltocmaketitle{\subsection*{\localcontentsname}}% + \def\etocclasslocallofmaketitle{\subsection*{\locallistfigurename}}% + \def\etocclasslocallotmaketitle{\subsection*{\locallisttablename}}% + \etocsettoclineforclasstoc {section}{\contentsname} + \etocsettoclineforclasslistof{toc}{subsection}{\localcontentsname} + \etocsettoclineforclasslistof{lof}{subsection}{\locallistfigurename} + \etocsettoclineforclasslistof{lot}{subsection}{\locallisttablename} +\fi +\def\etocclasslocalperhapsaddtotoc #1{% + \etocifisstarred + {} + {\csname ifEtoc@local#1totoc\endcsname + \csname etocclasslocal#1addtotoc\endcsname + \fi + }% +} +\def\etocarticlestyle{% + \etocsettocstyle + {\ifEtoc@localtoc + \@nameuse{etocclasslocal\Etoc@currext maketitle}% + \etocclasslocalperhapsaddtotoc\Etoc@currext + \else + \section *{\contentsname + \@mkboth {\MakeUppercase \contentsname} + {\MakeUppercase \contentsname}}% + \etocifisstarred{}{\etocifmaintoctotoc{\etocclassmaintocaddtotoc}{}}% + \fi + } + {}% +} +\def\etocarticlestylenomarks{% + \etocsettocstyle + {\ifEtoc@localtoc + \@nameuse{etocclasslocal\Etoc@currext maketitle}% + \etocclasslocalperhapsaddtotoc\Etoc@currext + \else + \section *{\contentsname}% + \etocifisstarred{}{\etocifmaintoctotoc{\etocclassmaintocaddtotoc}{}}% + \fi + } + {}% +} +\def\etocbookstyle{% + \etocsettocstyle + {\if@twocolumn \@restonecoltrue \onecolumn \else \@restonecolfalse \fi + \ifEtoc@localtoc + \@nameuse{etocclasslocal\Etoc@currext maketitle}% + \etocclasslocalperhapsaddtotoc\Etoc@currext + \else + \chapter *{\contentsname + \@mkboth {\MakeUppercase \contentsname} + {\MakeUppercase \contentsname}}% + \etocifisstarred{}{\etocifmaintoctotoc{\etocclassmaintocaddtotoc}{}}% + \fi + }% + {\if@restonecol \twocolumn \fi}% +} +\def\etocbookstylenomarks{% + \etocsettocstyle + {\if@twocolumn \@restonecoltrue \onecolumn \else \@restonecolfalse \fi + \ifEtoc@localtoc + \@nameuse{etocclasslocal\Etoc@currext maketitle}% + \etocclasslocalperhapsaddtotoc\Etoc@currext + \else + \chapter *{\contentsname}% + \etocifisstarred{}{\etocifmaintoctotoc{\etocclassmaintocaddtotoc}{}}% + \fi + }% + {\if@restonecol \twocolumn \fi}% +} +\let\etocreportstyle\etocbookstyle +\let\etocreportstylenomarks\etocbookstylenomarks +\def\etocmemoirstyle{% + \etocsettocstyle + {\ensureonecol \par \begingroup \phantomsection + \ifx\Etoc@aftertitlehook\@empty + \else + \ifmem@em@starred@listof + \else + \ifEtoc@localtoc + \etocclasslocalperhapsaddtotoc\Etoc@currext + \else + \ifEtoc@maintoctotoc + \etocclassmaintocaddtotoc + \fi + \fi + \fi + \fi + \ifEtoc@localtoc + \@namedef{@\Etoc@currext maketitle}{% + \@nameuse{etocclasslocal\Etoc@currext maketitle}% + }% + \fi + \@nameuse {@\Etoc@currext maketitle} %<< space token here from memoir code + \ifx\Etoc@aftertitlehook\@empty + \else + \Etoc@aftertitlehook \let \Etoc@aftertitlehook \relax + \fi + \parskip \cftparskip \@nameuse {cft\Etoc@currext beforelisthook}% + }% + {\@nameuse {cft\Etoc@currext afterlisthook}% + \endgroup\restorefromonecol + }% +} +\let\Etoc@beforetitlehook\@empty +\if1\@ifclassloaded{scrartcl}0{\@ifclassloaded{scrbook}0{\@ifclassloaded{scrreprt}01}}% +\expandafter\@gobble +\else + \ifdefined\setuptoc + \def\Etoc@beforetitlehook{% + \ifEtoc@localtoc + \etocclasslocalperhapsaddtotoc\Etoc@currext + \setuptoc{\Etoc@currext}{leveldown}% + \else + \etocifisstarred{}{\etocifmaintoctotoc{\setuptoc{toc}{totoc}}}% + \fi + }% + \fi +\expandafter\@firstofone +\fi +{\def\etocclasslocalperhapsaddtotoc #1{% + \etocifisstarred + {}% + {\csname ifEtoc@local#1totoc\endcsname + \setuptoc{\Etoc@currext}{totoc}% + \fi + }% + }% +} +\ifdefined\Iftocfeature + \def\etoc@Iftocfeature{\Iftocfeature}% +\else + \def\etoc@Iftocfeature{\iftocfeature}% +\fi +\def\etocscrartclstyle{% + \etocsettocstyle + {\ifx\Etoc@currext\Etoc@tocext + \expandafter\@firstofone + \else + \expandafter\@gobble + \fi + {\let\if@dynlist\if@tocleft}% + \edef\@currext{\Etoc@currext}% + \@ifundefined{listof\@currext name}% + {\def\list@fname{\listofname~\@currext}}% + {\expandafter\let\expandafter\list@fname + \csname listof\@currext name\endcsname}% + \etoc@Iftocfeature {\@currext}{onecolumn} + {\etoc@Iftocfeature {\@currext}{leveldown} + {} + {\if@twocolumn \aftergroup \twocolumn \onecolumn \fi }} + {}% + \etoc@Iftocfeature {\@currext}{numberline}% + {\def \nonumberline {\numberline {}}}{}% + \expandafter\tocbasic@listhead\expandafter {\list@fname}% + \begingroup \expandafter \expandafter \expandafter + \endgroup \expandafter + \ifx + \csname microtypesetup\endcsname \relax + \else + \etoc@Iftocfeature {\@currext}{noprotrusion}{} + {\microtypesetup {protrusion=false}% + \PackageInfo {tocbasic}% + {character protrusion at \@currext\space deactivated}}% + \fi + \etoc@Iftocfeature{\@currext}{noparskipfake}{}{% + \ifvmode \@tempskipa\lastskip \vskip-\lastskip + \addtolength{\@tempskipa}{\parskip}\vskip\@tempskipa\fi + }% + \setlength {\parskip }{\z@ }% + \setlength {\parindent }{\z@ }% + \setlength {\parfillskip }{\z@ \@plus 1fil}% + \csname tocbasic@@before@hook\endcsname + \csname tb@\@currext @before@hook\endcsname + }% end of before_toc + {% start of after_toc + \providecommand\tocbasic@end@toc@file{}\tocbasic@end@toc@file + \edef\@currext{\Etoc@currext}% + \csname tb@\@currext @after@hook\endcsname + \csname tocbasic@@after@hook\endcsname + }% end of after_toc +} +\let\etocscrbookstyle\etocscrartclstyle +\let\etocscrreprtstyle\etocscrartclstyle +\def\etocclasstocstyle{\etocarticlestyle} +\newcommand*\etocmarkboth[1]{% + \@mkboth{\MakeUppercase{#1}}{\MakeUppercase{#1}}} +\newcommand*\etocmarkbothnouc[1]{\@mkboth{#1}{#1}} +\newcommand\etoctocstyle[3][section]{\etocmulticolstyle[#2]% + {\csname #1\endcsname *{#3}}} +\newcommand\etoctocstylewithmarks[4][section]{\etocmulticolstyle[#2]% + {\csname #1\endcsname *{#3\etocmarkboth{#4}}}} +\newcommand\etoctocstylewithmarksnouc[4][section]{\etocmulticolstyle[#2]% + {\csname #1\endcsname *{#3\etocmarkbothnouc{#4}}}} +\def\Etoc@redefetocstylesforchapters{% + \renewcommand\etoctocstylewithmarks[4][chapter]{% + \etocmulticolstyle[##2]{\csname ##1\endcsname *{##3\etocmarkboth{##4}}}% + } + \renewcommand\etoctocstylewithmarksnouc[4][chapter]{% + \etocmulticolstyle[##2]{\csname ##1\endcsname *{##3\etocmarkbothnouc{##4}}}% + } + \renewcommand\etoctocstyle[3][chapter]{% + \etocmulticolstyle[##2]{\csname ##1\endcsname *{##3}} + } +} +\@ifclassloaded{scrartcl} + {\renewcommand*\etocclasstocstyle{\etocscrartclstyle}}{} +\@ifclassloaded{book} + {\renewcommand*\etocfontone{\normalfont\normalsize} + \renewcommand*\etocclasstocstyle{\etocbookstyle} + \Etoc@redefetocstylesforchapters}{} +\@ifclassloaded{report} + {\renewcommand*\etocfontone{\normalfont\normalsize} + \renewcommand*\etocclasstocstyle{\etocreportstyle} + \Etoc@redefetocstylesforchapters}{} +\@ifclassloaded{scrbook} + {\renewcommand*\etocfontone{\normalfont\normalsize} + \renewcommand*\etocclasstocstyle{\etocscrbookstyle} + \Etoc@redefetocstylesforchapters}{} +\@ifclassloaded{scrreprt} + {\renewcommand*\etocfontone{\normalfont\normalsize} + \renewcommand*\etocclasstocstyle{\etocscrreprtstyle} + \Etoc@redefetocstylesforchapters}{} +\@ifclassloaded{memoir} + {\renewcommand*\etocfontone{\normalfont\normalsize} + \renewcommand*\etocclasstocstyle{\etocmemoirstyle} + \Etoc@redefetocstylesforchapters}{} +\def\etoctocloftstyle {% + \etocsettocstyle{% + \@cfttocstart + \par + \begingroup + \parindent\z@ \parskip\cftparskip + \@nameuse{@cftmake\Etoc@currext title}% + \ifEtoc@localtoc + \etoctocloftlocalperhapsaddtotoc\Etoc@currext + \else + \etocifisstarred {}{\ifEtoc@maintoctotoc\@cftdobibtoc\fi}% + \fi + }% + {% + \endgroup + \@cfttocfinish + }% +} +\def\etoctocloftlocalperhapsaddtotoc#1{% + \etocifisstarred + {}% + {\csname ifEtoc@local#1totoc\endcsname + \ifdefined\c@chapter\def\@tocextra{@section}\else\def\@tocextra{@subsection}\fi + \csname @cftdobib#1\endcsname + \fi + }% +} +\def\etoctocbibindstyle {% + \etocsettocstyle {% + \toc@start + \ifEtoc@localtoc + \@nameuse{etocclasslocal\Etoc@currext maketitle}% + \etocclasslocalperhapsaddtotoc\Etoc@currext + \else + \etoc@tocbibind@dotoctitle + \fi + }% + {\toc@finish}% +} +\def\etoc@tocbibind@dotoctitle {% + \if@bibchapter + \etocifisstarred + {\chapter*{\contentsname}\prw@mkboth{\contentsname} % id. + }% + {\ifEtoc@maintoctotoc + \toc@chapter{\contentsname} %<-space from original + \else + \chapter*{\contentsname}\prw@mkboth{\contentsname} % id. + \fi + }% + \else + \etocifisstarred + {\@nameuse{\@tocextra}*{\contentsname\prw@mkboth{\contentsname}} %<-space + } + {\ifEtoc@maintoctotoc + \toc@section{\@tocextra}{\contentsname} %<-space from original + \else + \@nameuse{\@tocextra}*{\contentsname\prw@mkboth{\contentsname}} % id. + \fi + }% + \fi +}% +\@ifclassloaded{memoir} +{} +{% memoir not loaded + \@ifpackageloaded{tocloft} + {\if@cftnctoc\else + \ifEtoc@keeporiginaltoc + \else + \AtBeginDocument{\let\tableofcontents\etoctableofcontents}% + \fi + \fi } + {\AtBeginDocument + {\@ifpackageloaded{tocloft} + {\if@cftnctoc\else + \PackageWarningNoLine {etoc} + {Package `tocloft' was loaded after `etoc'.\MessageBreak + To prevent it from overwriting \protect\tableofcontents, it will\MessageBreak + be tricked into believing to have been loaded with its\MessageBreak + option `titles'. \space But this will cause the `tocloft'\MessageBreak + customization of the titles of the main list of figures\MessageBreak + and list of tables to not apply either.\MessageBreak + You should load `tocloft' before `etoc'.}% + \AtEndDocument{\PackageWarning{etoc} + {Please load `tocloft' before `etoc'!\@gobbletwo}}% + \fi + \@cftnctoctrue }% + {}% + }% + }% +} +\@ifclassloaded{memoir} +{} +{% memoir not loaded + \AtBeginDocument{% + \@ifpackageloaded{tocloft} + {% + \def\etocclasstocstyle{% + \etoctocloftstyle + \Etoc@classstyletrue + }% + \ifEtoc@etocstyle + \ifEtoc@classstyle + \etocclasstocstyle + \Etoc@etocstyletrue + \fi + \else + \ifEtoc@classstyle + \etocclasstocstyle + \fi + \fi + }% + {% no tocloft + \@ifpackageloaded {tocbibind} + {\if@dotoctoc + \def\etocclasstocstyle{% + \etoctocbibindstyle + \Etoc@classstyletrue + }% + \ifEtoc@etocstyle + \ifEtoc@classstyle + \etocclasstocstyle + \Etoc@etocstyletrue + \fi + \else + \ifEtoc@classstyle + \etocclasstocstyle + \fi + \fi + \ifEtoc@keeporiginaltoc + \else + \let\tableofcontents\etoctableofcontents + \fi + }% + {}% + }% + \@ifpackageloaded{tocbibind} + {% tocbibind, perhaps with tocloft + \if@dotoctoc + \ifEtoc@keeporiginaltoc + \else + \let\tableofcontents\etoctableofcontents + \fi + \etocsetup{maintoctotoc,localtoctotoc}% + \PackageInfo{etoc}{% + Setting (or re-setting) the options `maintoctotoc' and\MessageBreak + `localtoctotoc' to true as tocbibind was detected and\MessageBreak + found to be configured for `TOC to toc'.\MessageBreak + Reported at begin document}% + \fi + \if@dotoclof + \ifEtoc@lof + \etocsetup{localloftotoc}% + \PackageInfo{etoc}{% + Setting (or re-setting) `localloftotoc=true' as the\MessageBreak + package tocbibind was detected and is configured for\MessageBreak + `LOF to toc'. Reported at begin document}% + \fi + \fi + \if@dotoclot + \ifEtoc@lot + \etocsetup{locallottotoc}% + \PackageInfo{etoc}{% + Setting (or re-setting) `locallottotoc=true' as the\MessageBreak + package tocbibind was detected and is configured for\MessageBreak + `LOT to toc'. Reported at begin document}% + \fi + \fi + }% end of tocbibind branch + {}% + }% end of at begin document +}% end of not with memoir branch +\def\Etoc@addtocontents #1#2{% + \addtocontents {toc}{% + \protect\contentsline{#1}{#2}{\thepage}{\ifEtoc@hyperref\@currentHref\fi}% + \ifdefined\protected@file@percent\protected@file@percent\fi + }% +} +\def\Etoc@addcontentsline@ #1#2#3{% + \@namedef{toclevel@#1}{#3}\addcontentsline {toc}{#1}{#2}% +} +\DeclareRobustCommand*{\etoctoccontentsline} + {\@ifstar{\Etoc@addcontentsline@}{\Etoc@addtocontents}} +\def\Etoc@addtocontents@immediately#1#2{% + \begingroup + \let\Etoc@originalwrite\write + \def\write{\immediate\Etoc@originalwrite}% + \Etoc@addtocontents{#1}{#2}% + \endgroup +} +\def\Etoc@addcontentsline@@immediately#1#2#3{% + \begingroup + \let\Etoc@originalwrite\write + \def\write{\immediate\Etoc@originalwrite}% + \Etoc@addcontentsline@{#1}{#2}{#3}% + \endgoroup +} +\DeclareRobustCommand*{\etocimmediatetoccontentsline} + {\@ifstar{\Etoc@addcontentsline@@immediately}{\Etoc@addtocontents@immediately}} +\def\Etoc@storetocdepth {\xdef\Etoc@savedtocdepth{\number\c@tocdepth}} +\def\Etoc@restoretocdepth {\global\c@tocdepth\Etoc@savedtocdepth\relax} +\def\etocobeytoctocdepth {\def\etoc@settocdepth + {\afterassignment\Etoc@@nottoodeep \global\c@tocdepth}} +\def\Etoc@@nottoodeep {\ifnum\Etoc@savedtocdepth<\c@tocdepth + \global\c@tocdepth\Etoc@savedtocdepth\relax\fi } +\def\etocignoretoctocdepth {\let\etoc@settocdepth\@gobble } +\def\etocsettocdepth {\futurelet\Etoc@nexttoken\Etoc@set@tocdepth } +\def\Etoc@set@tocdepth {\ifx\Etoc@nexttoken\bgroup + \expandafter\Etoc@set@tocdepth@ + \else\expandafter\Etoc@set@toctocdepth + \fi } +\def\Etoc@set@tocdepth@ #1{\@ifundefined {Etoc@#1@@} + {\PackageWarning{etoc} + {Unknown sectioning unit #1, \protect\etocsettocdepth\space ignored}} + {\global\c@tocdepth\csname Etoc@#1@@\endcsname}% +} +\def\Etoc@set@toctocdepth #1#{\Etoc@set@toctocdepth@ } +\def\Etoc@set@toctocdepth@ #1{% + \@ifundefined{Etoc@#1@@}% + {\PackageWarning{etoc} + {Unknown sectioning depth #1, \protect\etocsettocdepth.toc ignored}}% + {\addtocontents {toc} + {\protect\etoc@settocdepth\expandafter\protect\csname Etoc@#1@@\endcsname}}% +} +\def\etocimmediatesettocdepth #1#{\Etoc@set@toctocdepth@immediately} +\def\Etoc@set@toctocdepth@immediately #1{% + \@ifundefined{Etoc@#1@@}% + {\PackageWarning{etoc} + {Unknown sectioning depth #1, \protect\etocimmediatesettocdepth.toc ignored}}% + {\begingroup + \let\Etoc@originalwrite\write + \def\write{\immediate\Etoc@originalwrite}% + \addtocontents {toc} + {\protect\etoc@settocdepth\expandafter\protect + \csname Etoc@#1@@\endcsname}% + \endgroup + }% +} +\def\etocdepthtag #1#{\Etoc@depthtag } +\def\Etoc@depthtag #1{\addtocontents {toc}{\protect\etoc@depthtag {#1}}} +\def\etocimmediatedepthtag #1#{\Etoc@depthtag@immediately } +\def\Etoc@depthtag@immediately #1{% + \begingroup + \let\Etoc@originalwrite\write + \def\write{\immediate\Etoc@originalwrite}% + \addtocontents {toc}{\protect\etoc@depthtag {#1}}% + \endgroup +} +\def\etocignoredepthtags {\let\etoc@depthtag \@gobble } +\def\etocobeydepthtags {\let\etoc@depthtag \Etoc@depthtag@ } +\def\Etoc@depthtag@ #1{\@ifundefined{Etoc@depthof@#1}% + {}% ignore in silence if tag has no associated depth + {\afterassignment\Etoc@@nottoodeep + \global\c@tocdepth\csname Etoc@depthof@#1\endcsname}% +} +\def\etocsettagdepth #1#2{\@ifundefined{Etoc@#2@@}% + {\PackageWarning{etoc} + {Unknown sectioning depth #2, \protect\etocsettagdepth\space ignored}}% + {\@namedef{Etoc@depthof@#1}{\@nameuse{Etoc@#2@@}}}% +} +\def\Etoc@tocvsec@err #1{\PackageError {etoc} + {The command \protect#1\space is incompatible with `etoc'} + {Use \protect\etocsettocdepth.toc as replacement}% +}% +\AtBeginDocument {% + \@ifclassloaded{memoir} + {\PackageInfo {etoc} + {Regarding `memoir' class command \protect\settocdepth, consider\MessageBreak + \protect\etocsettocdepth.toc as a drop-in replacement with more\MessageBreak + capabilities (see `etoc' manual). \space + Also, \protect\etocsettocdepth\MessageBreak + and \protect\etocsetnexttocdepth\space should be used in place of\MessageBreak + `memoir' command \protect\maxtocdepth\@gobble}% + }% + {\@ifpackageloaded {tocvsec2}{% + \def\maxtocdepth #1{\Etoc@tocvsec@err \maxtocdepth }% + \def\settocdepth #1{\Etoc@tocvsec@err \settocdepth }% + \def\resettocdepth {\@ifstar {\Etoc@tocvsec@err \resettocdepth }% + {\Etoc@tocvsec@err \resettocdepth }% + }% + \def\save@tocdepth #1#2#3{}% + \let\reset@tocdepth\relax + \let\remax@tocdepth\relax + \let\tableofcontents\etoctableofcontents + \PackageWarningNoLine {etoc} + {Package `tocvsec2' detected and its modification of\MessageBreak + \protect\tableofcontents\space reverted. \space Use + \protect\etocsettocdepth.toc\MessageBreak as a replacement + for `tocvsec2' toc-related commands}% + }% tocvsec2 loaded + {}% tocvsec2 not loaded + }% +}% +\def\invisibletableofcontents {\etocsetnexttocdepth {-3}\tableofcontents }% +\def\invisiblelocaltableofcontents + {\etocsetnexttocdepth {-3}\localtableofcontents }% +\def\etocsetnexttocdepth #1{% + \@ifundefined{Etoc@#1@@} + {\PackageWarning{etoc} + {Unknown sectioning unit #1, \protect\etocsetnextocdepth\space ignored}} + {\Etoc@setnexttocdepth{\csname Etoc@#1@@\endcsname}}% +}% +\def\Etoc@setnexttocdepth#1{% + \def\Etoc@tocdepthset{% + \Etoc@tocdepthreset + \edef\Etoc@tocdepthreset {% + \global\c@tocdepth\the\c@tocdepth\space + \global\let\noexpand\Etoc@tocdepthreset\noexpand\@empty + }% + \global\c@tocdepth#1% + \global\let\Etoc@tocdepthset\@empty + }% +}% +\let\Etoc@tocdepthreset\@empty +\let\Etoc@tocdepthset \@empty +\def\etocsetlocaltop #1#{\Etoc@set@localtop}% +\def\Etoc@set@localtop #1{% + \@ifundefined{Etoc@#1@@}% + {\PackageWarning{etoc} + {Unknown sectioning depth #1, \protect\etocsetlocaltop.toc ignored}}% + {\addtocontents {toc} + {\protect\etoc@setlocaltop\expandafter\protect\csname Etoc@#1@@\endcsname}}% +}% +\def\etocimmediatesetlocaltop #1#{\Etoc@set@localtop@immediately}% +\def\Etoc@set@localtop@immediately #1{% + \@ifundefined{Etoc@#1@@}% + {\PackageWarning{etoc} + {Unknown sectioning depth #1, \protect\etocimmediatesetlocaltop.toc ignored}}% + {\begingroup + \let\Etoc@originalwrite\write + \def\write{\immediate\Etoc@originalwrite}% + \addtocontents {toc} + {\protect\etoc@setlocaltop\expandafter\protect + \csname Etoc@#1@@\endcsname}% + \endgroup + }% +}% +\def\etoc@setlocaltop #1{% + \ifnum#1=\Etoc@maxlevel + \Etoc@skipthisonetrue + \else + \Etoc@skipthisonefalse + \global\let\Etoc@level #1% + \global\let\Etoc@virtualtop #1% + \ifEtoc@localtoc + \ifEtoc@stoptoc + \Etoc@skipthisonetrue + \else + \ifEtoc@notactive + \Etoc@skipthisonetrue + \else + \unless\ifnum\Etoc@level>\etoclocaltop + \Etoc@skipthisonetrue + \global\Etoc@stoptoctrue + \fi + \fi + \fi + \fi + \fi + \let\Etoc@next\@empty + \ifEtoc@skipthisone + \else + \ifnum\Etoc@level>\c@tocdepth + \else + \ifEtoc@standardlines + \else + \let\Etoc@next\Etoc@setlocaltop@doendsandbegin + \fi + \fi + \fi + \Etoc@next +}% +\def\Etoc@setlocaltop@doendsandbegin{% + \Etoc@doendsandbegin + \global\Etoc@skipprefixfalse +} +\addtocontents {toc}{\protect\@ifundefined{etoctocstyle}% + {\let\protect\etoc@startlocaltoc\protect\@gobble + \let\protect\etoc@settocdepth\protect\@gobble + \let\protect\etoc@depthtag\protect\@gobble + \let\protect\etoc@setlocaltop\protect\@gobble}{}}% +\def\etocstandardlines {\Etoc@standardlinestrue} +\def\etoctoclines {\Etoc@standardlinesfalse} +\etocdefaultlines +\etocstandardlines +\def\etocstandarddisplaystyle{% + \PackageWarningNoLine{etoc}{% + \string\etocstandarddisplaystyle \on@line\MessageBreak + is deprecated. \space Please use \string\etocclasstocstyle}% +} +\expandafter\def\expandafter\etocclasstocstyle\expandafter{% + \etocclasstocstyle + \Etoc@classstyletrue +} +\def\etocetoclocaltocstyle{\Etoc@etocstyletrue} +\def\etocusertocstyle{\Etoc@etocstylefalse} +\etocclasstocstyle +\etocetoclocaltocstyle +\etocobeytoctocdepth +\etocobeydepthtags +\let\etocbeforetitlehook \@empty +\let\etocaftertitlehook \@empty +\let\etocaftercontentshook \@empty +\let\etocaftertochook \@empty +\def\etockeeporiginaltableofcontents + {\Etoc@keeporiginaltoctrue\let\tableofcontents\etocoriginaltableofcontents}% +\endinput +%% +%% End of file `etoc.sty'. diff --git a/latex/files.tex b/latex/files.tex new file mode 100644 index 00000000..b272f013 --- /dev/null +++ b/latex/files.tex @@ -0,0 +1,4 @@ +\doxysection{File List} +Here is a list of all documented files with brief descriptions\+:\begin{DoxyCompactList} +\item\contentsline{section}{src/cpp/\mbox{\hyperlink{utils_8h_source}{utils.\+h}} }{\pageref{utils_8h_source}}{} +\end{DoxyCompactList} diff --git a/latex/longtable_doxygen.sty b/latex/longtable_doxygen.sty new file mode 100644 index 00000000..39a44b88 --- /dev/null +++ b/latex/longtable_doxygen.sty @@ -0,0 +1,459 @@ +%% +%% This is file `longtable.sty', +%% generated with the docstrip utility. +%% +%% The original source files were: +%% +%% longtable.dtx (with options: `package') +%% +%% This is a generated file. +%% +%% The source is maintained by the LaTeX Project team and bug +%% reports for it can be opened at http://latex-project.org/bugs.html +%% (but please observe conditions on bug reports sent to that address!) +%% +%% Copyright 1993-2016 +%% The LaTeX3 Project and any individual authors listed elsewhere +%% in this file. +%% +%% This file was generated from file(s) of the Standard LaTeX `Tools Bundle'. +%% -------------------------------------------------------------------------- +%% +%% It may be distributed and/or modified under the +%% conditions of the LaTeX Project Public License, either version 1.3c +%% of this license or (at your option) any later version. +%% The latest version of this license is in +%% http://www.latex-project.org/lppl.txt +%% and version 1.3c or later is part of all distributions of LaTeX +%% version 2005/12/01 or later. +%% +%% This file may only be distributed together with a copy of the LaTeX +%% `Tools Bundle'. You may however distribute the LaTeX `Tools Bundle' +%% without such generated files. +%% +%% The list of all files belonging to the LaTeX `Tools Bundle' is +%% given in the file `manifest.txt'. +%% +%% File: longtable.dtx Copyright (C) 1990-2001 David Carlisle +\NeedsTeXFormat{LaTeX2e}[1995/06/01] +\ProvidesPackage{longtable_doxygen} + [2014/10/28 v4.11 Multi-page Table package (DPC) - frozen version for doxygen] +\def\LT@err{\PackageError{longtable}} +\def\LT@warn{\PackageWarning{longtable}} +\def\LT@final@warn{% + \AtEndDocument{% + \LT@warn{Table \@width s have changed. Rerun LaTeX.\@gobbletwo}}% + \global\let\LT@final@warn\relax} +\DeclareOption{errorshow}{% + \def\LT@warn{\PackageInfo{longtable}}} +\DeclareOption{pausing}{% + \def\LT@warn#1{% + \LT@err{#1}{This is not really an error}}} +\DeclareOption{set}{} +\DeclareOption{final}{} +\ProcessOptions +\newskip\LTleft \LTleft=\fill +\newskip\LTright \LTright=\fill +\newskip\LTpre \LTpre=\bigskipamount +\newskip\LTpost \LTpost=\bigskipamount +\newcount\LTchunksize \LTchunksize=20 +\let\c@LTchunksize\LTchunksize +\newdimen\LTcapwidth \LTcapwidth=4in +\newbox\LT@head +\newbox\LT@firsthead +\newbox\LT@foot +\newbox\LT@lastfoot +\newcount\LT@cols +\newcount\LT@rows +\newcounter{LT@tables} +\newcounter{LT@chunks}[LT@tables] +\ifx\c@table\undefined + \newcounter{table} + \def\fnum@table{\tablename~\thetable} +\fi +\ifx\tablename\undefined + \def\tablename{Table} +\fi +\newtoks\LT@p@ftn +\mathchardef\LT@end@pen=30000 +\def\longtable{% + \par + \ifx\multicols\@undefined + \else + \ifnum\col@number>\@ne + \@twocolumntrue + \fi + \fi + \if@twocolumn + \LT@err{longtable not in 1-column mode}\@ehc + \fi + \begingroup + \@ifnextchar[\LT@array{\LT@array[x]}} +\def\LT@array[#1]#2{% + \refstepcounter{table}\stepcounter{LT@tables}% + \if l#1% + \LTleft\z@ \LTright\fill + \else\if r#1% + \LTleft\fill \LTright\z@ + \else\if c#1% + \LTleft\fill \LTright\fill + \fi\fi\fi + \let\LT@mcol\multicolumn + \let\LT@@tabarray\@tabarray + \let\LT@@hl\hline + \def\@tabarray{% + \let\hline\LT@@hl + \LT@@tabarray}% + \let\\\LT@tabularcr\let\tabularnewline\\% + \def\newpage{\noalign{\break}}% + \def\pagebreak{\noalign{\ifnum`}=0\fi\@testopt{\LT@no@pgbk-}4}% + \def\nopagebreak{\noalign{\ifnum`}=0\fi\@testopt\LT@no@pgbk4}% + \let\hline\LT@hline \let\kill\LT@kill\let\caption\LT@caption + \@tempdima\ht\strutbox + \let\@endpbox\LT@endpbox + \ifx\extrarowheight\@undefined + \let\@acol\@tabacol + \let\@classz\@tabclassz \let\@classiv\@tabclassiv + \def\@startpbox{\vtop\LT@startpbox}% + \let\@@startpbox\@startpbox + \let\@@endpbox\@endpbox + \let\LT@LL@FM@cr\@tabularcr + \else + \advance\@tempdima\extrarowheight + \col@sep\tabcolsep + \let\@startpbox\LT@startpbox\let\LT@LL@FM@cr\@arraycr + \fi + \setbox\@arstrutbox\hbox{\vrule + \@height \arraystretch \@tempdima + \@depth \arraystretch \dp \strutbox + \@width \z@}% + \let\@sharp##\let\protect\relax + \begingroup + \@mkpream{#2}% + \xdef\LT@bchunk{% + \global\advance\c@LT@chunks\@ne + \global\LT@rows\z@\setbox\z@\vbox\bgroup + \LT@setprevdepth + \tabskip\LTleft \noexpand\halign to\hsize\bgroup + \tabskip\z@ \@arstrut \@preamble \tabskip\LTright \cr}% + \endgroup + \expandafter\LT@nofcols\LT@bchunk&\LT@nofcols + \LT@make@row + \m@th\let\par\@empty + \everycr{}\lineskip\z@\baselineskip\z@ + \LT@bchunk} +\def\LT@no@pgbk#1[#2]{\penalty #1\@getpen{#2}\ifnum`{=0\fi}} +\def\LT@start{% + \let\LT@start\endgraf + \endgraf\penalty\z@\vskip\LTpre + \dimen@\pagetotal + \advance\dimen@ \ht\ifvoid\LT@firsthead\LT@head\else\LT@firsthead\fi + \advance\dimen@ \dp\ifvoid\LT@firsthead\LT@head\else\LT@firsthead\fi + \advance\dimen@ \ht\LT@foot + \dimen@ii\vfuzz + \vfuzz\maxdimen + \setbox\tw@\copy\z@ + \setbox\tw@\vsplit\tw@ to \ht\@arstrutbox + \setbox\tw@\vbox{\unvbox\tw@}% + \vfuzz\dimen@ii + \advance\dimen@ \ht + \ifdim\ht\@arstrutbox>\ht\tw@\@arstrutbox\else\tw@\fi + \advance\dimen@\dp + \ifdim\dp\@arstrutbox>\dp\tw@\@arstrutbox\else\tw@\fi + \advance\dimen@ -\pagegoal + \ifdim \dimen@>\z@\vfil\break\fi + \global\@colroom\@colht + \ifvoid\LT@foot\else + \global\advance\vsize-\ht\LT@foot + \global\advance\@colroom-\ht\LT@foot + \dimen@\pagegoal\advance\dimen@-\ht\LT@foot\pagegoal\dimen@ + \maxdepth\z@ + \fi + \ifvoid\LT@firsthead\copy\LT@head\else\box\LT@firsthead\fi\nobreak + \output{\LT@output}} +\def\endlongtable{% + \crcr + \noalign{% + \let\LT@entry\LT@entry@chop + \xdef\LT@save@row{\LT@save@row}}% + \LT@echunk + \LT@start + \unvbox\z@ + \LT@get@widths + \if@filesw + {\let\LT@entry\LT@entry@write\immediate\write\@auxout{% + \gdef\expandafter\noexpand + \csname LT@\romannumeral\c@LT@tables\endcsname + {\LT@save@row}}}% + \fi + \ifx\LT@save@row\LT@@save@row + \else + \LT@warn{Column \@width s have changed\MessageBreak + in table \thetable}% + \LT@final@warn + \fi + \endgraf\penalty -\LT@end@pen + \ifvoid\LT@foot\else + \global\advance\vsize\ht\LT@foot + \global\advance\@colroom\ht\LT@foot + \dimen@\pagegoal\advance\dimen@\ht\LT@foot\pagegoal\dimen@ + \fi + \endgroup + \global\@mparbottom\z@ + \endgraf\penalty\z@\addvspace\LTpost + \ifvoid\footins\else\insert\footins{}\fi} +\def\LT@nofcols#1&{% + \futurelet\@let@token\LT@n@fcols} +\def\LT@n@fcols{% + \advance\LT@cols\@ne + \ifx\@let@token\LT@nofcols + \expandafter\@gobble + \else + \expandafter\LT@nofcols + \fi} +\def\LT@tabularcr{% + \relax\iffalse{\fi\ifnum0=`}\fi + \@ifstar + {\def\crcr{\LT@crcr\noalign{\nobreak}}\let\cr\crcr + \LT@t@bularcr}% + {\LT@t@bularcr}} +\let\LT@crcr\crcr +\let\LT@setprevdepth\relax +\def\LT@t@bularcr{% + \global\advance\LT@rows\@ne + \ifnum\LT@rows=\LTchunksize + \gdef\LT@setprevdepth{% + \prevdepth\z@\global + \global\let\LT@setprevdepth\relax}% + \expandafter\LT@xtabularcr + \else + \ifnum0=`{}\fi + \expandafter\LT@LL@FM@cr + \fi} +\def\LT@xtabularcr{% + \@ifnextchar[\LT@argtabularcr\LT@ntabularcr} +\def\LT@ntabularcr{% + \ifnum0=`{}\fi + \LT@echunk + \LT@start + \unvbox\z@ + \LT@get@widths + \LT@bchunk} +\def\LT@argtabularcr[#1]{% + \ifnum0=`{}\fi + \ifdim #1>\z@ + \unskip\@xargarraycr{#1}% + \else + \@yargarraycr{#1}% + \fi + \LT@echunk + \LT@start + \unvbox\z@ + \LT@get@widths + \LT@bchunk} +\def\LT@echunk{% + \crcr\LT@save@row\cr\egroup + \global\setbox\@ne\lastbox + \unskip + \egroup} +\def\LT@entry#1#2{% + \ifhmode\@firstofone{&}\fi\omit + \ifnum#1=\c@LT@chunks + \else + \kern#2\relax + \fi} +\def\LT@entry@chop#1#2{% + \noexpand\LT@entry + {\ifnum#1>\c@LT@chunks + 1}{0pt% + \else + #1}{#2% + \fi}} +\def\LT@entry@write{% + \noexpand\LT@entry^^J% + \@spaces} +\def\LT@kill{% + \LT@echunk + \LT@get@widths + \expandafter\LT@rebox\LT@bchunk} +\def\LT@rebox#1\bgroup{% + #1\bgroup + \unvbox\z@ + \unskip + \setbox\z@\lastbox} +\def\LT@blank@row{% + \xdef\LT@save@row{\expandafter\LT@build@blank + \romannumeral\number\LT@cols 001 }} +\def\LT@build@blank#1{% + \if#1m% + \noexpand\LT@entry{1}{0pt}% + \expandafter\LT@build@blank + \fi} +\def\LT@make@row{% + \global\expandafter\let\expandafter\LT@save@row + \csname LT@\romannumeral\c@LT@tables\endcsname + \ifx\LT@save@row\relax + \LT@blank@row + \else + {\let\LT@entry\or + \if!% + \ifcase\expandafter\expandafter\expandafter\LT@cols + \expandafter\@gobble\LT@save@row + \or + \else + \relax + \fi + !% + \else + \aftergroup\LT@blank@row + \fi}% + \fi} +\let\setlongtables\relax +\def\LT@get@widths{% + \setbox\tw@\hbox{% + \unhbox\@ne + \let\LT@old@row\LT@save@row + \global\let\LT@save@row\@empty + \count@\LT@cols + \loop + \unskip + \setbox\tw@\lastbox + \ifhbox\tw@ + \LT@def@row + \advance\count@\m@ne + \repeat}% + \ifx\LT@@save@row\@undefined + \let\LT@@save@row\LT@save@row + \fi} +\def\LT@def@row{% + \let\LT@entry\or + \edef\@tempa{% + \ifcase\expandafter\count@\LT@old@row + \else + {1}{0pt}% + \fi}% + \let\LT@entry\relax + \xdef\LT@save@row{% + \LT@entry + \expandafter\LT@max@sel\@tempa + \LT@save@row}} +\def\LT@max@sel#1#2{% + {\ifdim#2=\wd\tw@ + #1% + \else + \number\c@LT@chunks + \fi}% + {\the\wd\tw@}} +\def\LT@hline{% + \noalign{\ifnum0=`}\fi + \penalty\@M + \futurelet\@let@token\LT@@hline} +\def\LT@@hline{% + \ifx\@let@token\hline + \global\let\@gtempa\@gobble + \gdef\LT@sep{\penalty-\@medpenalty\vskip\doublerulesep}% + \else + \global\let\@gtempa\@empty + \gdef\LT@sep{\penalty-\@lowpenalty\vskip-\arrayrulewidth}% + \fi + \ifnum0=`{\fi}% + \multispan\LT@cols + \unskip\leaders\hrule\@height\arrayrulewidth\hfill\cr + \noalign{\LT@sep}% + \multispan\LT@cols + \unskip\leaders\hrule\@height\arrayrulewidth\hfill\cr + \noalign{\penalty\@M}% + \@gtempa} +\def\LT@caption{% + \noalign\bgroup + \@ifnextchar[{\egroup\LT@c@ption\@firstofone}\LT@capti@n} +\def\LT@c@ption#1[#2]#3{% + \LT@makecaption#1\fnum@table{#3}% + \def\@tempa{#2}% + \ifx\@tempa\@empty\else + {\let\\\space + \addcontentsline{lot}{table}{\protect\numberline{\thetable}{#2}}}% + \fi} +\def\LT@capti@n{% + \@ifstar + {\egroup\LT@c@ption\@gobble[]}% + {\egroup\@xdblarg{\LT@c@ption\@firstofone}}} +\def\LT@makecaption#1#2#3{% + \LT@mcol\LT@cols c{\hbox to\z@{\hss\parbox[t]\LTcapwidth{% + \sbox\@tempboxa{#1{#2: }#3}% + \ifdim\wd\@tempboxa>\hsize + #1{#2: }#3% + \else + \hbox to\hsize{\hfil\box\@tempboxa\hfil}% + \fi + \endgraf\vskip\baselineskip}% + \hss}}} +\def\LT@output{% + \ifnum\outputpenalty <-\@Mi + \ifnum\outputpenalty > -\LT@end@pen + \LT@err{floats and marginpars not allowed in a longtable}\@ehc + \else + \setbox\z@\vbox{\unvbox\@cclv}% + \ifdim \ht\LT@lastfoot>\ht\LT@foot + \dimen@\pagegoal + \advance\dimen@\ht\LT@foot + \advance\dimen@-\ht\LT@lastfoot + \ifdim\dimen@<\ht\z@ + \setbox\@cclv\vbox{\unvbox\z@\copy\LT@foot\vss}% + \@makecol + \@outputpage + \global\vsize\@colroom + \setbox\z@\vbox{\box\LT@head}% + \fi + \fi + \unvbox\z@\ifvoid\LT@lastfoot\copy\LT@foot\else\box\LT@lastfoot\fi + \fi + \else + \setbox\@cclv\vbox{\unvbox\@cclv\copy\LT@foot\vss}% + \@makecol + \@outputpage + \global\vsize\@colroom + \copy\LT@head\nobreak + \fi} +\def\LT@end@hd@ft#1{% + \LT@echunk + \ifx\LT@start\endgraf + \LT@err + {Longtable head or foot not at start of table}% + {Increase LTchunksize}% + \fi + \setbox#1\box\z@ + \LT@get@widths + \LT@bchunk} +\def\endfirsthead{\LT@end@hd@ft\LT@firsthead} +\def\endhead{\LT@end@hd@ft\LT@head} +\def\endfoot{\LT@end@hd@ft\LT@foot} +\def\endlastfoot{\LT@end@hd@ft\LT@lastfoot} +\def\LT@startpbox#1{% + \bgroup + \let\@footnotetext\LT@p@ftntext + \setlength\hsize{#1}% + \@arrayparboxrestore + \vrule \@height \ht\@arstrutbox \@width \z@} +\def\LT@endpbox{% + \@finalstrut\@arstrutbox + \egroup + \the\LT@p@ftn + \global\LT@p@ftn{}% + \hfil} +%% added \long to prevent: +% LaTeX Warning: Command \LT@p@ftntext has changed. +% +% from the original repository (https://github.com/latex3/latex2e/blob/develop/required/tools/longtable.dtx): +% \changes{v4.15}{2021/03/28} +% {make long for gh/364} +% Inside the `p' column, just save up the footnote text in a token +% register. +\long\def\LT@p@ftntext#1{% + \edef\@tempa{\the\LT@p@ftn\noexpand\footnotetext[\the\c@footnote]}% + \global\LT@p@ftn\expandafter{\@tempa{#1}}}% + +\@namedef{ver@longtable.sty}{2014/10/28 v4.11 Multi-page Table package (DPC) - frozen version for doxygen} +\endinput +%% +%% End of file `longtable.sty'. diff --git a/latex/refman.tex b/latex/refman.tex new file mode 100644 index 00000000..6be6de27 --- /dev/null +++ b/latex/refman.tex @@ -0,0 +1,249 @@ + % Handle batch mode + % to overcome problems with too many open files + \let\mypdfximage\pdfximage\def\pdfximage{\immediate\mypdfximage} + \RequirePackage{iftex} + \ifLuaTeX + \directlua{pdf.setminorversion(7)} + \fi + \ifXeTeX + \special{pdf:minorversion 7} + \fi + \ifPDFTeX + \pdfminorversion=7 + \fi + % Set document class depending on configuration + \documentclass[twoside]{book} + %% moved from doxygen.sty due to workaround for LaTex 2019 version and unmaintained tabu package + \usepackage{ifthen} + \ifx\requestedLaTeXdate\undefined + \usepackage{array} + \else + \usepackage{array}[=2016-10-06] + \fi + %% + % Packages required by doxygen + \makeatletter + \providecommand\IfFormatAtLeastTF{\@ifl@t@r\fmtversion} + % suppress package identification of infwarerr as it contains the word "warning" + \let\@@protected@wlog\protected@wlog + \def\protected@wlog#1{\wlog{package info suppressed}} + \RequirePackage{infwarerr} + \let\protected@wlog\@@protected@wlog + \makeatother + \IfFormatAtLeastTF{2016/01/01}{}{\usepackage{fixltx2e}} % for \textsubscript + \ifPDFTeX + \IfFormatAtLeastTF{2015/01/01}{\pdfsuppresswarningpagegroup=1}{} + \fi + \usepackage{doxygen} + \usepackage{graphicx} + \iftutex + \usepackage{fontspec} + \defaultfontfeatures{Ligatures={TeX}} + \usepackage{unicode-math} + \else + \usepackage[utf8]{inputenc} + \fi + \usepackage{makeidx} + \PassOptionsToPackage{warn}{textcomp} + \usepackage{textcomp} + \usepackage[nointegrals]{wasysym} + \usepackage{ifxetex} + % NLS support packages + % Define default fonts + % Font selection + \iftutex + \else + \usepackage[T1]{fontenc} + \fi + % set main and monospaced font + \usepackage[scaled=.90]{helvet} +\usepackage{courier} +\renewcommand{\familydefault}{\sfdefault} + \doxyallsectionsfont{% + \fontseries{bc}\selectfont% + \color{darkgray}% + } + \renewcommand{\DoxyLabelFont}{% + \fontseries{bc}\selectfont% + \color{darkgray}% + } + \newcommand{\+}{\discretionary{\mbox{\scriptsize$\hookleftarrow$}}{}{}} + % Arguments of doxygenemoji: + % 1) '::' form of the emoji, already LaTeX-escaped + % 2) file with the name of the emoji without the .png extension + % in case image exist use this otherwise use the '::' form + \newcommand{\doxygenemoji}[2]{% + \IfFileExists{./#2.png}{\raisebox{-0.1em}{\includegraphics[height=0.9em]{./#2.png}}}{#1}% + } + % Page & text layout + \usepackage{geometry} + \geometry{% + a4paper,% + top=2.5cm,% + bottom=2.5cm,% + left=2.5cm,% + right=2.5cm% + } + \usepackage{changepage} + % Allow a bit of overflow to go unnoticed by other means + \tolerance=750 + \hfuzz=15pt + \hbadness=750 + \setlength{\emergencystretch}{15pt} + \setlength{\parindent}{0cm} + \newcommand{\doxynormalparskip}{\setlength{\parskip}{3ex plus 2ex minus 2ex}} + \newcommand{\doxytocparskip}{\setlength{\parskip}{1ex plus 0ex minus 0ex}} + \doxynormalparskip + % Redefine paragraph/subparagraph environments, using sectsty fonts + \makeatletter + \renewcommand{\paragraph}{% + \@startsection{paragraph}{4}{0ex}{-1.0ex}{1.0ex}{% + \normalfont\normalsize\bfseries\SS@parafont% + }% + } + \renewcommand{\subparagraph}{% + \@startsection{subparagraph}{5}{0ex}{-1.0ex}{1.0ex}{% + \normalfont\normalsize\bfseries\SS@subparafont% + }% + } + \makeatother + \makeatletter + \newcommand\hrulefilll{\leavevmode\leaders\hrule\hskip 0pt plus 1filll\kern\z@} + \makeatother + % Headers & footers + \usepackage{fancyhdr} + \pagestyle{fancyplain} + \renewcommand{\footrulewidth}{0.4pt} + \fancypagestyle{fancyplain}{ + \fancyhf{} + \fancyhead[LE, RO]{\bfseries\thepage} + \fancyhead[LO]{\bfseries\rightmark} + \fancyhead[RE]{\bfseries\leftmark} + \fancyfoot[LO, RE]{\bfseries\scriptsize Generated by Doxygen } + } + \fancypagestyle{plain}{ + \fancyhf{} + \fancyfoot[LO, RE]{\bfseries\scriptsize Generated by Doxygen } + \renewcommand{\headrulewidth}{0pt} + } + \pagestyle{fancyplain} + \renewcommand{\chaptermark}[1]{% + \markboth{#1}{}% + } + \renewcommand{\sectionmark}[1]{% + \markright{\thesection\ #1}% + } + % ToC, LoF, LoT, bibliography, and index + % Indices & bibliography + \usepackage{natbib} + \usepackage[titles]{tocloft} + \setcounter{tocdepth}{3} + \setcounter{secnumdepth}{5} + % creating indexes + \makeindex + \ifPDFTeX +\usepackage{newunicodechar} + \makeatletter + \def\doxynewunicodechar#1#2{% + \@tempswafalse + \edef\nuc@tempa{\detokenize{#1}}% + \if\relax\nuc@tempa\relax + \nuc@emptyargerr + \else + \edef\@tempb{\expandafter\@car\nuc@tempa\@nil}% + \nuc@check + \if@tempswa + \@namedef{u8:\nuc@tempa}{#2}% + \fi + \fi + } + \makeatother + \doxynewunicodechar{⁻}{${}^{-}$}% Superscript minus + \doxynewunicodechar{²}{${}^{2}$}% Superscript two + \doxynewunicodechar{³}{${}^{3}$}% Superscript three +\fi + % Hyperlinks + % Hyperlinks (required, but should be loaded last) + \ifPDFTeX + \usepackage[pdftex,pagebackref=true]{hyperref} + \else + \ifXeTeX + \usepackage[xetex,pagebackref=true]{hyperref} + \else + \ifLuaTeX + \usepackage[luatex,pagebackref=true]{hyperref} + \else + \usepackage[ps2pdf,pagebackref=true]{hyperref} + \fi + \fi + \fi + \hypersetup{% + colorlinks=true,% + linkcolor=blue,% + citecolor=blue,% + unicode,% + pdftitle={Many-\/vs-\/many sketch comparison},% + pdfsubject={Fast many-\/vs-\/many sketch comparison}% + } + % Custom commands used by the header + % Custom commands + \newcommand{\clearemptydoublepage}{% + \newpage{\pagestyle{empty}\cleardoublepage}% + } + % caption style definition + \usepackage{caption} + \captionsetup{labelsep=space,justification=centering,font={bf},singlelinecheck=off,skip=4pt,position=top} + % in page table of contents + \IfFormatAtLeastTF{2023/05/01}{\usepackage[deeplevels]{etoc}}{\usepackage[deeplevels]{etoc_doxygen}} + \etocsettocstyle{\doxytocparskip}{\doxynormalparskip} + \etocsetlevel{subsubsubsection}{4} + \etocsetlevel{subsubsubsubsection}{5} + \etocsetlevel{subsubsubsubsubsection}{6} + \etocsetlevel{subsubsubsubsubsubsection}{7} + \etocsetlevel{paragraph}{8} + \etocsetlevel{subparagraph}{9} + % prevent numbers overlap the titles in toc + \renewcommand{\numberline}[1]{#1~} +% End of preamble, now comes the document contents +%===== C O N T E N T S ===== +\begin{document} + \raggedbottom + % Titlepage & ToC + % To avoid duplicate page anchors due to reuse of same numbers for + % the index (be it as roman numbers) + \hypersetup{pageanchor=false, + bookmarksnumbered=true, + pdfencoding=unicode + } + \pagenumbering{alph} + \begin{titlepage} + \vspace*{7cm} + \begin{center}% + {\Large Many-\/vs-\/many sketch comparison}\\ + [1ex]\large 1 \\ + \vspace*{1cm} + {\large Generated by Doxygen 1.11.0}\\ + \end{center} + \end{titlepage} + \clearemptydoublepage + \pagenumbering{roman} + \tableofcontents + \clearemptydoublepage + \pagenumbering{arabic} + % re-enable anchors again + \hypersetup{pageanchor=true} +%--- Begin generated contents --- +\chapter{File Index} +\input{files} +\chapter{File Documentation} +\input{utils_8h_source} +%--- End generated contents --- +% Index + \backmatter + \newpage + \phantomsection + \clearemptydoublepage + \addcontentsline{toc}{chapter}{\indexname} + \printindex +% Required for some languages (in combination with latexdocumentpre from the header) +\end{document} diff --git a/latex/tabu_doxygen.sty b/latex/tabu_doxygen.sty new file mode 100644 index 00000000..3f17d1d0 --- /dev/null +++ b/latex/tabu_doxygen.sty @@ -0,0 +1,2557 @@ +%% +%% This is file `tabu.sty', +%% generated with the docstrip utility. +%% +%% The original source files were: +%% +%% tabu.dtx (with options: `package') +%% +%% This is a generated file. +%% Copyright (FC) 2010-2011 - lppl +%% +%% tabu : 2011/02/26 v2.8 - tabu : Flexible LaTeX tabulars +%% +%% ********************************************************************************************** +%% \begin{tabu} { preamble } => default target: \linewidth or \linegoal +%% \begin{tabu} to { preamble } => target specified +%% \begin{tabu} spread { preamble } => target relative to the ``natural width'' +%% +%% tabu works in text and in math modes. +%% +%% X columns: automatic width adjustment + horizontal and vertical alignment +%% \begin{tabu} { X[4c] X[1c] X[-2ml] } +%% +%% Horizontal lines and / or leaders: +%% \hline\hline => double horizontal line +%% \firsthline\hline => for nested tabulars +%% \lasthline\hline => for nested tabulars +%% \tabucline[line spec]{column-column} => ``funny'' lines (dash/leader) +%% Automatic lines / leaders : +%% \everyrow{\hline\hline} +%% +%% Vertical lines and / or leaders: +%% \begin{tabu} { |[3pt red] X[4c] X[1c] X[-2ml] |[3pt blue] } +%% \begin{tabu} { |[3pt red] X[4c] X[1c] X[-2ml] |[3pt on 2pt off 4pt blue] } +%% +%% Fixed vertical spacing adjustment: +%% \extrarowheight= \extrarowdepth= +%% or: \extrarowsep= => may be prefixed by \global +%% +%% Dynamic vertical spacing adjustment: +%% \abovetabulinesep= \belowtabulinesep= +%% or: \tabulinesep= => may be prefixed by \global +%% +%% delarray.sty shortcuts: in math and text modes +%% \begin{tabu} .... \({ preamble }\) +%% +%% Algorithms reports: +%% \tracingtabu=1 \tracingtabu=2 +%% +%% ********************************************************************************************** +%% +%% This work may be distributed and/or modified under the +%% conditions of the LaTeX Project Public License, either +%% version 1.3 of this license or (at your option) any later +%% version. The latest version of this license is in +%% http://www.latex-project.org/lppl.txt +%% +%% This work consists of the main source file tabu.dtx +%% and the derived files +%% tabu.sty, tabu.pdf, tabu.ins +%% +%% tabu : Flexible LaTeX tabulars +%% lppl copyright 2010-2011 by FC +%% + +\NeedsTeXFormat{LaTeX2e}[2005/12/01] +\ProvidesPackage{tabu_doxygen}[2011/02/26 v2.8 - flexible LaTeX tabulars (FC), frozen version for doxygen] +\RequirePackage{array}[2008/09/09] +\RequirePackage{varwidth}[2009/03/30] +\AtEndOfPackage{\tabu@AtEnd \let\tabu@AtEnd \@undefined} +\let\tabu@AtEnd\@empty +\def\TMP@EnsureCode#1={% + \edef\tabu@AtEnd{\tabu@AtEnd + \catcode#1 \the\catcode#1}% + \catcode#1=% +}% \TMP@EnsureCode +\TMP@EnsureCode 33 = 12 % ! +\TMP@EnsureCode 58 = 12 % : (for siunitx) +\TMP@EnsureCode124 = 12 % | +\TMP@EnsureCode 36 = 3 % $ = math shift +\TMP@EnsureCode 38 = 4 % & = tab alignment character +\TMP@EnsureCode 32 = 10 % space +\TMP@EnsureCode 94 = 7 % ^ +\TMP@EnsureCode 95 = 8 % _ +%% Constants -------------------------------------------------------- +\newcount \c@taburow \def\thetaburow {\number\c@taburow} +\newcount \tabu@nbcols +\newcount \tabu@cnt +\newcount \tabu@Xcol +\let\tabu@start \@tempcnta +\let\tabu@stop \@tempcntb +\newcount \tabu@alloc \tabu@alloc=\m@ne +\newcount \tabu@nested +\def\tabu@alloc@{\global\advance\tabu@alloc \@ne \tabu@nested\tabu@alloc} +\newdimen \tabu@target +\newdimen \tabu@spreadtarget +\newdimen \tabu@naturalX +\newdimen \tabucolX +\let\tabu@DELTA \@tempdimc +\let\tabu@thick \@tempdima +\let\tabu@on \@tempdimb +\let\tabu@off \@tempdimc +\newdimen \tabu@Xsum +\newdimen \extrarowdepth +\newdimen \abovetabulinesep +\newdimen \belowtabulinesep +\newdimen \tabustrutrule \tabustrutrule \z@ +\newtoks \tabu@thebody +\newtoks \tabu@footnotes +\newsavebox \tabu@box +\newsavebox \tabu@arstrutbox +\newsavebox \tabu@hleads +\newsavebox \tabu@vleads +\newif \iftabu@colortbl +\newif \iftabu@siunitx +\newif \iftabu@measuring +\newif \iftabu@spread +\newif \iftabu@negcoef +\newif \iftabu@everyrow +\def\tabu@everyrowtrue {\global\let\iftabu@everyrow \iftrue} +\def\tabu@everyrowfalse{\global\let\iftabu@everyrow \iffalse} +\newif \iftabu@long +\newif \iftabuscantokens +\def\tabu@rescan {\tabu@verbatim \scantokens } +%% Utilities (for internal usage) ----------------------------------- +\def\tabu@gobblespace #1 {#1} +\def\tabu@gobbletoken #1#2{#1} +\def\tabu@gobbleX{\futurelet\@let@token \tabu@gobblex} +\def\tabu@gobblex{\if ^^J\noexpand\@let@token \expandafter\@gobble + \else\ifx \@sptoken\@let@token + \expandafter\tabu@gobblespace\expandafter\tabu@gobbleX + \fi\fi +}% \tabu@gobblex +\def\tabu@X{^^J} +{\obeyspaces +\global\let\tabu@spxiii= % saves an active space (for \ifx) +\gdef\tabu@@spxiii{ }} +\def\tabu@ifenvir {% only for \multicolumn + \expandafter\tabu@if@nvir\csname\@currenvir\endcsname +}% \tabu@ifenvir +\def\tabu@if@nvir #1{\csname @\ifx\tabu#1first\else + \ifx\longtabu#1first\else + second\fi\fi oftwo\endcsname +}% \tabu@ifenvir +\def\tabu@modulo #1#2{\numexpr\ifnum\numexpr#1=\z@ 0\else #1-(#1-(#2-1)/2)/(#2)*(#2)\fi} +{\catcode`\&=3 +\gdef\tabu@strtrim #1{% #1 = control sequence to trim + \ifodd 1\ifx #1\@empty \else \ifx #1\space \else 0\fi \fi + \let\tabu@c@l@r \@empty \let#1\@empty + \else \expandafter \tabu@trimspaces #1\@nnil + \fi +}% \tabu@strtrim +\gdef\tabu@trimspaces #1\@nnil{\let\tabu@c@l@r=#2\tabu@firstspace .#1& }% +\gdef\tabu@firstspace #1#2#3 &{\tabu@lastspace #2#3&} +\gdef\tabu@lastspace #1{\def #3{#1}% + \ifx #3\tabu@c@l@r \def\tabu@c@l@r{\protect\color{#1}}\expandafter\remove@to@nnil \fi + \tabu@trimspaces #1\@nnil} +}% \catcode +\def\tabu@sanitizearg #1#2{{% + \csname \ifcsname if@safe@actives\endcsname % + @safe@activestrue\else + relax\fi \endcsname + \edef#2{#1}\tabu@strtrim#2\@onelevel@sanitize#2% + \expandafter}\expandafter\def\expandafter#2\expandafter{#2}% +}% \tabu@sanitizearg +\def\tabu@textbar #1{\begingroup \endlinechar\m@ne \scantokens{\def\:{|}}% + \expandafter\endgroup \expandafter#1\:% !!! semi simple group !!! +}% \tabu@textbar +\def\tabu@everyrow@bgroup{\iftabu@everyrow \begingroup \else \noalign{\ifnum0=`}\fi \fi} +\def\tabu@everyrow@egroup{% + \iftabu@everyrow \expandafter \endgroup \the\toks@ + \else \ifnum0=`{\fi}% + \fi +}% \tabu@everyrow@egroup +\def\tabu@arstrut {\global\setbox\@arstrutbox \hbox{\vrule + height \arraystretch \dimexpr\ht\strutbox+\extrarowheight + depth \arraystretch \dimexpr\dp\strutbox+\extrarowdepth + width \z@}% +}% \tabu@arstrut +\def\tabu@rearstrut {% + \@tempdima \arraystretch\dimexpr\ht\strutbox+\extrarowheight \relax + \@tempdimb \arraystretch\dimexpr\dp\strutbox+\extrarowdepth \relax + \ifodd 1\ifdim \ht\@arstrutbox=\@tempdima + \ifdim \dp\@arstrutbox=\@tempdimb 0 \fi\fi + \tabu@mkarstrut + \fi +}% \tabu@rearstrut +\def\tabu@@DBG #1{\ifdim\tabustrutrule>\z@ \color{#1}\fi} +\def\tabu@DBG@arstrut {\global\setbox\@arstrutbox + \hbox to\z@{\hbox to\z@{\hss + {\tabu@DBG{cyan}\vrule + height \arraystretch \dimexpr\ht\strutbox+\extrarowheight + depth \z@ + width \tabustrutrule}\kern-\tabustrutrule + {\tabu@DBG{pink}\vrule + height \z@ + depth \arraystretch \dimexpr\dp\strutbox+\extrarowdepth + width \tabustrutrule}}}% +}% \tabu@DBG@arstrut +\def\tabu@save@decl{\toks\count@ \expandafter{\the\toks\expandafter\count@ + \@nextchar}}% +\def\tabu@savedecl{\ifcat$\d@llarend\else + \let\save@decl \tabu@save@decl \fi % no inversion of tokens in text mode +}% \tabu@savedecl +\def\tabu@finalstrut #1{\unskip\ifhmode\nobreak\fi\vrule height\z@ depth\z@ width\z@} +\newcommand*\tabuDisableCommands {\g@addto@macro\tabu@trialh@@k } +\let\tabu@trialh@@k \@empty +\def\tabu@nowrite #1#{{\afterassignment}\toks@} +\let\tabu@write\write +\let\tabu@immediate\immediate +\def\tabu@WRITE{\begingroup + \def\immediate\write{\aftergroup\endgroup + \tabu@immediate\tabu@write}% +}% \tabu@WRITE +\expandafter\def\expandafter\tabu@GenericError\expandafter{% + \expandafter\tabu@WRITE\GenericError} +\def\tabu@warn{\tabu@WRITE\PackageWarning{tabu}} +\def\tabu@noxfootnote [#1]{\@gobble} +\def\tabu@nocolor #1#{\@gobble} +\newcommand*\tabu@norowcolor[2][]{} +\def\tabu@maybesiunitx #1{\def\tabu@temp{#1}% + \futurelet\@let@token \tabu@m@ybesiunitx} +\def\tabu@m@ybesiunitx #1{\def\tabu@m@ybesiunitx {% + \ifx #1\@let@token \let\tabu@cellleft \@empty \let\tabu@cellright \@empty \fi + \tabu@temp}% \tabu@m@ybesiunitx +}\expandafter\tabu@m@ybesiunitx \csname siunitx_table_collect_begin:Nn\endcsname +\def\tabu@celllalign@def #1{\def\tabu@celllalign{\tabu@maybesiunitx{#1}}}% +%% Fixed vertical spacing adjustment: \extrarowsep ------------------ +\newcommand*\extrarowsep{\edef\tabu@C@extra{\the\numexpr\tabu@C@extra+1}% + \iftabu@everyrow \aftergroup\tabu@Gextra + \else \aftergroup\tabu@n@Gextra + \fi + \@ifnextchar={\tabu@gobbletoken\tabu@extra} \tabu@extra +}% \extrarowsep +\def\tabu@extra {\@ifnextchar_% + {\tabu@gobbletoken{\tabu@setextra\extrarowheight \extrarowdepth}} + {\ifx ^\@let@token \def\tabu@temp{% + \tabu@gobbletoken{\tabu@setextra\extrarowdepth \extrarowheight}}% + \else \let\tabu@temp \@empty + \afterassignment \tabu@setextrasep \extrarowdepth + \fi \tabu@temp}% +}% \tabu@extra +\def\tabu@setextra #1#2{\def\tabu@temp{\tabu@extr@#1#2}\afterassignment\tabu@temp#2} +\def\tabu@extr@ #1#2{\@ifnextchar^% + {\tabu@gobbletoken{\tabu@setextra\extrarowdepth \extrarowheight}} + {\ifx _\@let@token \def\tabu@temp{% + \tabu@gobbletoken{\tabu@setextra\extrarowheight \extrarowdepth}}% + \else \let\tabu@temp \@empty + \tabu@Gsave \tabu@G@extra \tabu@C@extra \extrarowheight \extrarowdepth + \fi \tabu@temp}% +}% \tabu@extr@ +\def\tabu@setextrasep {\extrarowheight=\extrarowdepth + \tabu@Gsave \tabu@G@extra \tabu@C@extra \extrarowheight \extrarowdepth +}% \tabu@setextrasep +\def\tabu@Gextra{\ifx \tabu@G@extra\@empty \else {\tabu@Rextra}\fi} +\def\tabu@n@Gextra{\ifx \tabu@G@extra\@empty \else \noalign{\tabu@Rextra}\fi} +\def\tabu@Rextra{\tabu@Grestore \tabu@G@extra \tabu@C@extra} +\let\tabu@C@extra \z@ +\let\tabu@G@extra \@empty +%% Dynamic vertical spacing adjustment: \tabulinesep ---------------- +\newcommand*\tabulinesep{\edef\tabu@C@linesep{\the\numexpr\tabu@C@linesep+1}% + \iftabu@everyrow \aftergroup\tabu@Glinesep + \else \aftergroup\tabu@n@Glinesep + \fi + \@ifnextchar={\tabu@gobbletoken\tabu@linesep} \tabu@linesep +}% \tabulinesep +\def\tabu@linesep {\@ifnextchar_% + {\tabu@gobbletoken{\tabu@setsep\abovetabulinesep \belowtabulinesep}} + {\ifx ^\@let@token \def\tabu@temp{% + \tabu@gobbletoken{\tabu@setsep\belowtabulinesep \abovetabulinesep}}% + \else \let\tabu@temp \@empty + \afterassignment \tabu@setlinesep \abovetabulinesep + \fi \tabu@temp}% +}% \tabu@linesep +\def\tabu@setsep #1#2{\def\tabu@temp{\tabu@sets@p#1#2}\afterassignment\tabu@temp#2} +\def\tabu@sets@p #1#2{\@ifnextchar^% + {\tabu@gobbletoken{\tabu@setsep\belowtabulinesep \abovetabulinesep}} + {\ifx _\@let@token \def\tabu@temp{% + \tabu@gobbletoken{\tabu@setsep\abovetabulinesep \belowtabulinesep}}% + \else \let\tabu@temp \@empty + \tabu@Gsave \tabu@G@linesep \tabu@C@linesep \abovetabulinesep \belowtabulinesep + \fi \tabu@temp}% +}% \tabu@sets@p +\def\tabu@setlinesep {\belowtabulinesep=\abovetabulinesep + \tabu@Gsave \tabu@G@linesep \tabu@C@linesep \abovetabulinesep \belowtabulinesep +}% \tabu@setlinesep +\def\tabu@Glinesep{\ifx \tabu@G@linesep\@empty \else {\tabu@Rlinesep}\fi} +\def\tabu@n@Glinesep{\ifx \tabu@G@linesep\@empty \else \noalign{\tabu@Rlinesep}\fi} +\def\tabu@Rlinesep{\tabu@Grestore \tabu@G@linesep \tabu@C@linesep} +\let\tabu@C@linesep \z@ +\let\tabu@G@linesep \@empty +%% \global\extrarowsep and \global\tabulinesep ------------------- +\def\tabu@Gsave #1#2#3#4{\xdef#1{#1% + \toks#2{\toks\the\currentgrouplevel{\global#3\the#3\global#4\the#4}}}% +}% \tabu@Gsave +\def\tabu@Grestore#1#2{% + \toks#2{}#1\toks\currentgrouplevel\expandafter{\expandafter}\the\toks#2\relax + \ifcat$\the\toks\currentgrouplevel$\else + \global\let#1\@empty \global\let#2\z@ + \the\toks\currentgrouplevel + \fi +}% \tabu@Grestore +%% Setting code for every row --------------------------------------- +\newcommand*\everyrow{\tabu@everyrow@bgroup + \tabu@start \z@ \tabu@stop \z@ \tabu@evrstartstop +}% \everyrow +\def\tabu@evrstartstop {\@ifnextchar^% + {\afterassignment \tabu@evrstartstop \tabu@stop=}% + {\ifx ^\@let@token + \afterassignment\tabu@evrstartstop \tabu@start=% + \else \afterassignment\tabu@everyr@w \toks@ + \fi}% +}% \tabu@evrstartstop +\def\tabu@everyr@w {% + \xdef\tabu@everyrow{% + \noexpand\tabu@everyrowfalse + \let\noalign \relax + \noexpand\tabu@rowfontreset + \iftabu@colortbl \noexpand\tabu@rc@ \fi % \taburowcolors + \let\noexpand\tabu@docline \noexpand\tabu@docline@evr + \the\toks@ + \noexpand\tabu@evrh@@k + \noexpand\tabu@rearstrut + \global\advance\c@taburow \@ne}% + \iftabu@everyrow \toks@\expandafter + {\expandafter\def\expandafter\tabu@evr@L\expandafter{\the\toks@}\ignorespaces}% + \else \xdef\tabu@evr@G{\the\toks@}% + \fi + \tabu@everyrow@egroup +}% \tabu@everyr@w +\def\tabu@evr {\def\tabu@evrh@@k} % for internal use only +\tabu@evr{} +%% line style and leaders ------------------------------------------- +\newcommand*\newtabulinestyle [1]{% + {\@for \@tempa :=#1\do{\expandafter\tabu@newlinestyle \@tempa==\@nil}}% +}% \newtabulinestyle +\def\tabu@newlinestyle #1=#2=#3\@nil{\tabu@getline {#2}% + \tabu@sanitizearg {#1}\@tempa + \ifodd 1\ifx \@tempa\@empty \ifdefined\tabu@linestyle@ 0 \fi\fi + \global\expandafter\let + \csname tabu@linestyle@\@tempa \endcsname =\tabu@thestyle \fi +}% \tabu@newlinestyle +\newcommand*\tabulinestyle [1]{\tabu@everyrow@bgroup \tabu@getline{#1}% + \iftabu@everyrow + \toks@\expandafter{\expandafter \def \expandafter + \tabu@ls@L\expandafter{\tabu@thestyle}\ignorespaces}% + \gdef\tabu@ls@{\tabu@ls@L}% + \else + \global\let\tabu@ls@G \tabu@thestyle + \gdef\tabu@ls@{\tabu@ls@G}% + \fi + \tabu@everyrow@egroup +}% \tabulinestyle +\newcommand*\taburulecolor{\tabu@everyrow@bgroup \tabu@textbar \tabu@rulecolor} +\def\tabu@rulecolor #1{\toks@{}% + \def\tabu@temp #1##1#1{\tabu@ruledrsc{##1}}\@ifnextchar #1% + \tabu@temp + \tabu@rulearc +}% \tabu@rulecolor +\def\tabu@ruledrsc #1{\edef\tabu@temp{#1}\tabu@strtrim\tabu@temp + \ifx \tabu@temp\@empty \def\tabu@temp{\tabu@rule@drsc@ {}{}}% + \else \edef\tabu@temp{\noexpand\tabu@rule@drsc@ {}{\tabu@temp}}% + \fi + \tabu@temp +}% \tabu@ruledrsc@ +\def\tabu@ruledrsc@ #1#{\tabu@rule@drsc@ {#1}} +\def\tabu@rule@drsc@ #1#2{% + \iftabu@everyrow + \ifx \\#1#2\\\toks@{\let\CT@drsc@ \relax}% + \else \toks@{\def\CT@drsc@{\color #1{#2}}}% + \fi + \else + \ifx \\#1#2\\\global\let\CT@drsc@ \relax + \else \gdef\CT@drsc@{\color #1{#2}}% + \fi + \fi + \tabu@rulearc +}% \tabu@rule@drsc@ +\def\tabu@rulearc #1#{\tabu@rule@arc@ {#1}} +\def\tabu@rule@arc@ #1#2{% + \iftabu@everyrow + \ifx \\#1#2\\\toks@\expandafter{\the\toks@ \def\CT@arc@{}}% + \else \toks@\expandafter{\the\toks@ \def\CT@arc@{\color #1{#2}}}% + \fi + \toks@\expandafter{\the\toks@ + \let\tabu@arc@L \CT@arc@ + \let\tabu@drsc@L \CT@drsc@ + \ignorespaces}% + \else + \ifx \\#1#2\\\gdef\CT@arc@{}% + \else \gdef\CT@arc@{\color #1{#2}}% + \fi + \global\let\tabu@arc@G \CT@arc@ + \global\let\tabu@drsc@G \CT@drsc@ + \fi + \tabu@everyrow@egroup +}% \tabu@rule@arc@ +\def\taburowcolors {\tabu@everyrow@bgroup \@testopt \tabu@rowcolors 1} +\def\tabu@rowcolors [#1]#2#{\tabu@rowc@lors{#1}{#2}} +\def\tabu@rowc@lors #1#2#3{% + \toks@{}\@defaultunits \count@ =\number0#2\relax \@nnil + \@defaultunits \tabu@start =\number0#1\relax \@nnil + \ifnum \count@<\tw@ \count@=\tw@ \fi + \advance\tabu@start \m@ne + \ifnum \tabu@start<\z@ \tabu@start \z@ \fi + \tabu@rowcolorseries #3\in@..\in@ \@nnil +}% \tabu@rowcolors +\def\tabu@rowcolorseries #1..#2\in@ #3\@nnil {% + \ifx \in@#1\relax + \iftabu@everyrow \toks@{\def\tabu@rc@{}\let\tabu@rc@L \tabu@rc@}% + \else \gdef\tabu@rc@{}\global\let\tabu@rc@G \tabu@rc@ + \fi + \else + \ifx \\#2\\\tabu@rowcolorserieserror \fi + \tabu@sanitizearg{#1}\tabu@temp + \tabu@sanitizearg{#2}\@tempa + \advance\count@ \m@ne + \iftabu@everyrow + \def\tabu@rc@ ##1##2##3##4{\def\tabu@rc@{% + \ifnum ##2=\c@taburow + \definecolorseries{tabu@rcseries@\the\tabu@nested}{rgb}{last}{##3}{##4}\fi + \ifnum \c@taburow<##2 \else + \ifnum \tabu@modulo {\c@taburow-##2}{##1+1}=\z@ + \resetcolorseries[{##1}]{tabu@rcseries@\the\tabu@nested}\fi + \xglobal\colorlet{tabu@rc@\the\tabu@nested}{tabu@rcseries@\the\tabu@nested!!+}% + \rowcolor{tabu@rc@\the\tabu@nested}\fi}% + }\edef\x{\noexpand\tabu@rc@ {\the\count@} + {\the\tabu@start} + {\tabu@temp} + {\@tempa}% + }\x + \toks@\expandafter{\expandafter\def\expandafter\tabu@rc@\expandafter{\tabu@rc@}}% + \toks@\expandafter{\the\toks@ \let\tabu@rc@L \tabu@rc@ \ignorespaces}% + \else % inside \noalign + \definecolorseries{tabu@rcseries@\the\tabu@nested}{rgb}{last}{\tabu@temp}{\@tempa}% + \expandafter\resetcolorseries\expandafter[\the\count@]{tabu@rcseries@\the\tabu@nested}% + \xglobal\colorlet{tabu@rc@\the\tabu@nested}{tabu@rcseries@\the\tabu@nested!!+}% + \let\noalign \relax \rowcolor{tabu@rc@\the\tabu@nested}% + \def\tabu@rc@ ##1##2{\gdef\tabu@rc@{% + \ifnum \tabu@modulo {\c@taburow-##2}{##1+1}=\@ne + \resetcolorseries[{##1}]{tabu@rcseries@\the\tabu@nested}\fi + \xglobal\colorlet{tabu@rc@\the\tabu@nested}{tabu@rcseries@\the\tabu@nested!!+}% + \rowcolor{tabu@rc@\the\tabu@nested}}% + }\edef\x{\noexpand\tabu@rc@{\the\count@}{\the\c@taburow}}\x + \global\let\tabu@rc@G \tabu@rc@ + \fi + \fi + \tabu@everyrow@egroup +}% \tabu@rowcolorseries +\tabuDisableCommands {\let\tabu@rc@ \@empty } +\def\tabu@rowcolorserieserror {\PackageError{tabu} + {Invalid syntax for \string\taburowcolors + \MessageBreak Please look at the documentation!}\@ehd +}% \tabu@rowcolorserieserror +\newcommand*\tabureset {% + \tabulinesep=\z@ \extrarowsep=\z@ \extratabsurround=\z@ + \tabulinestyle{}\everyrow{}\taburulecolor||{}\taburowcolors{}% +}% \tabureset +%% Parsing the line styles ------------------------------------------ +\def\tabu@getline #1{\begingroup + \csname \ifcsname if@safe@actives\endcsname % + @safe@activestrue\else + relax\fi \endcsname + \edef\tabu@temp{#1}\tabu@sanitizearg{#1}\@tempa + \let\tabu@thestyle \relax + \ifcsname tabu@linestyle@\@tempa \endcsname + \edef\tabu@thestyle{\endgroup + \def\tabu@thestyle{\expandafter\noexpand + \csname tabu@linestyle@\@tempa\endcsname}% + }\tabu@thestyle + \else \expandafter\tabu@definestyle \tabu@temp \@nil + \fi +}% \tabu@getline +\def\tabu@definestyle #1#2\@nil {\endlinechar \m@ne \makeatletter + \tabu@thick \maxdimen \tabu@on \maxdimen \tabu@off \maxdimen + \let\tabu@c@lon \@undefined \let\tabu@c@loff \@undefined + \ifodd 1\ifcat .#1\else\ifcat\relax #1\else 0\fi\fi % catcode 12 or non expandable cs + \def\tabu@temp{\tabu@getparam{thick}}% + \else \def\tabu@temp{\tabu@getparam{thick}\maxdimen}% + \fi + {% + \let\tabu@ \relax + \def\:{\obeyspaces \tabu@oXIII \tabu@commaXIII \edef\:}% (space active \: happy ;-)) + \scantokens{\:{\tabu@temp #1#2 \tabu@\tabu@}}% + \expandafter}\expandafter + \def\expandafter\:\expandafter{\:}% line spec rewritten now ;-) + \def\;{\def\:}% + \scantokens\expandafter{\expandafter\;\expandafter{\:}}% space is now inactive (catcode 10) + \let\tabu@ \tabu@getcolor \:% all arguments are ready now ;-) + \ifdefined\tabu@c@lon \else \let\tabu@c@lon\@empty \fi + \ifx \tabu@c@lon\@empty \def\tabu@c@lon{\CT@arc@}\fi + \ifdefined\tabu@c@loff \else \let\tabu@c@loff \@empty \fi + \ifdim \tabu@on=\maxdimen \ifdim \tabu@off<\maxdimen + \tabu@on \tabulineon \fi\fi + \ifdim \tabu@off=\maxdimen \ifdim \tabu@on<\maxdimen + \tabu@off \tabulineoff \fi\fi + \ifodd 1\ifdim \tabu@off=\maxdimen \ifdim \tabu@on=\maxdimen 0 \fi\fi + \in@true % + \else \in@false % + \fi + \ifdim\tabu@thick=\maxdimen \def\tabu@thick{\arrayrulewidth}% + \else \edef\tabu@thick{\the\tabu@thick}% + \fi + \edef \tabu@thestyle ##1##2{\endgroup + \def\tabu@thestyle{% + \ifin@ \noexpand\tabu@leadersstyle {\tabu@thick} + {\the\tabu@on}{##1} + {\the\tabu@off}{##2}% + \else \noexpand\tabu@rulesstyle + {##1\vrule width \tabu@thick}% + {##1\leaders \hrule height \tabu@thick \hfil}% + \fi}% + }\expandafter \expandafter + \expandafter \tabu@thestyle \expandafter + \expandafter \expandafter + {\expandafter\tabu@c@lon\expandafter}\expandafter{\tabu@c@loff}% +}% \tabu@definestyle +{\catcode`\O=\active \lccode`\O=`\o \catcode`\,=\active + \lowercase{\gdef\tabu@oXIII {\catcode`\o=\active \let O=\tabu@oxiii}} + \gdef\tabu@commaXIII {\catcode`\,=\active \let ,=\space} +}% \catcode +\def\tabu@oxiii #1{% + \ifcase \ifx n#1\z@ \else + \ifx f#1\@ne\else + \tw@ \fi\fi + \expandafter\tabu@onxiii + \or \expandafter\tabu@ofxiii + \else o% + \fi#1}% +\def\tabu@onxiii #1#2{% + \ifcase \ifx !#2\tw@ \else + \ifcat.\noexpand#2\z@ \else + \ifx \tabu@spxiii#2\@ne\else + \tw@ \fi\fi\fi + \tabu@getparam{on}#2\expandafter\@gobble + \or \expandafter\tabu@onxiii % (space is active) + \else o\expandafter\@firstofone + \fi{#1#2}}% +\def\tabu@ofxiii #1#2{% + \ifx #2f\expandafter\tabu@offxiii + \else o\expandafter\@firstofone + \fi{#1#2}} +\def\tabu@offxiii #1#2{% + \ifcase \ifx !#2\tw@ \else + \ifcat.\noexpand#2\z@ \else + \ifx\tabu@spxiii#2\@ne \else + \tw@ \fi\fi\fi + \tabu@getparam{off}#2\expandafter\@gobble + \or \expandafter\tabu@offxiii % (space is active) + \else o\expandafter\@firstofone + \fi{#1#2}} +\def\tabu@getparam #1{\tabu@ \csname tabu@#1\endcsname=} +\def\tabu@getcolor #1{% \tabu@ <- \tabu@getcolor after \edef + \ifx \tabu@#1\else % no more spec + \let\tabu@theparam=#1\afterassignment \tabu@getc@l@r #1\fi +}% \tabu@getcolor +\def\tabu@getc@l@r #1\tabu@ {% + \def\tabu@temp{#1}\tabu@strtrim \tabu@temp + \ifx \tabu@temp\@empty + \else%\ifcsname \string\color@\tabu@temp \endcsname % if the color exists + \ifx \tabu@theparam \tabu@off \let\tabu@c@loff \tabu@c@l@r + \else \let\tabu@c@lon \tabu@c@l@r + \fi + %\else \tabu@warncolour{\tabu@temp}% + \fi%\fi + \tabu@ % next spec +}% \tabu@getc@l@r +\def\tabu@warncolour #1{\PackageWarning{tabu} + {Color #1 is not defined. Default color used}% +}% \tabu@warncolour +\def\tabu@leadersstyle #1#2#3#4#5{\def\tabu@leaders{{#1}{#2}{#3}{#4}{#5}}% + \ifx \tabu@leaders\tabu@leaders@G \else + \tabu@LEADERS{#1}{#2}{#3}{#4}{#5}\fi +}% \tabu@leadersstyle +\def\tabu@rulesstyle #1#2{\let\tabu@leaders \@undefined + \gdef\tabu@thevrule{#1}\gdef\tabu@thehrule{#2}% +}% \tabu@rulesstyle +%% The leaders boxes ------------------------------------------------ +\def\tabu@LEADERS #1#2#3#4#5{%% width, dash, dash color, gap, gap color + {\let\color \tabu@color % => during trials -> \color = \tabu@nocolor + {% % but the leaders boxes should have colors ! + \def\@therule{\vrule}\def\@thick{height}\def\@length{width}% + \def\@box{\hbox}\def\@unbox{\unhbox}\def\@elt{\wd}% + \def\@skip{\hskip}\def\@ss{\hss}\def\tabu@leads{\tabu@hleads}% + \tabu@l@@d@rs {#1}{#2}{#3}{#4}{#5}% + \global\let\tabu@thehleaders \tabu@theleaders + }% + {% + \def\@therule{\hrule}\def\@thick{width}\def\@length{height}% + \def\@box{\vbox}\def\@unbox{\unvbox}\def\@elt{\ht}% + \def\@skip{\vskip}\def\@ss{\vss}\def\tabu@leads{\tabu@vleads}% + \tabu@l@@d@rs {#1}{#2}{#3}{#4}{#5}% + \global\let\tabu@thevleaders \tabu@theleaders + }% + \gdef\tabu@leaders@G{{#1}{#2}{#3}{#4}{#5}}% + }% +}% \tabu@LEADERS +\def\tabu@therule #1#2{\@therule \@thick#1\@length\dimexpr#2/2 \@depth\z@} +\def\tabu@l@@d@rs #1#2#3#4#5{%% width, dash, dash color, gap, gap color + \global\setbox \tabu@leads=\@box{% + {#3\tabu@therule{#1}{#2}}% + \ifx\\#5\\\@skip#4\else{#5\tabu@therule{#1}{#4*2}}\fi + {#3\tabu@therule{#1}{#2}}}% + \global\setbox\tabu@leads=\@box to\@elt\tabu@leads{\@ss + {#3\tabu@therule{#1}{#2}}\@unbox\tabu@leads}% + \edef\tabu@theleaders ##1{\def\noexpand\tabu@theleaders {% + {##1\tabu@therule{#1}{#2}}% + \xleaders \copy\tabu@leads \@ss + \tabu@therule{0pt}{-#2}{##1\tabu@therule{#1}{#2}}}% + }\tabu@theleaders{#3}% +}% \tabu@l@@d@rs +%% \tabu \endtabu \tabu* \longtabu \endlongtabu \longtabu* ---------- +\newcommand*\tabu {\tabu@longfalse + \ifmmode \def\tabu@ {\array}\def\endtabu {\endarray}% + \else \def\tabu@ {\tabu@tabular}\def\endtabu {\endtabular}\fi + \expandafter\let\csname tabu*\endcsname \tabu + \expandafter\def\csname endtabu*\endcsname{\endtabu}% + \tabu@spreadfalse \tabu@negcoeffalse \tabu@settarget +}% {tabu} +\let\tabu@tabular \tabular % +\expandafter\def\csname tabu*\endcsname{\tabuscantokenstrue \tabu} +\newcommand*\longtabu {\tabu@longtrue + \ifmmode\PackageError{tabu}{longtabu not allowed in math mode}\fi + \def\tabu@{\longtable}\def\endlongtabu{\endlongtable}% + \LTchunksize=\@M + \expandafter\let\csname tabu*\endcsname \tabu + \expandafter\def\csname endlongtabu*\endcsname{\endlongtabu}% + \let\LT@startpbox \tabu@LT@startpbox % \everypar{ array struts } + \tabu@spreadfalse \tabu@negcoeffalse \tabu@settarget +}% {longtabu} +\expandafter\def\csname longtabu*\endcsname{\tabuscantokenstrue \longtabu} +\def\tabu@nolongtabu{\PackageError{tabu} + {longtabu requires the longtable package}\@ehd} +%% Read the target and then : \tabular or \@array ------------------ +\def\tabu@settarget {\futurelet\@let@token \tabu@sett@rget } +\def\tabu@sett@rget {\tabu@target \z@ + \ifcase \ifx \bgroup\@let@token \z@ \else + \ifx \@sptoken\@let@token \@ne \else + \if t\@let@token \tw@ \else + \if s\@let@token \thr@@\else + \z@\fi\fi\fi\fi + \expandafter\tabu@begin + \or \expandafter\tabu@gobblespace\expandafter\tabu@settarget + \or \expandafter\tabu@to + \or \expandafter\tabu@spread + \fi +}% \tabu@sett@rget +\def\tabu@to to{\def\tabu@halignto{to}\tabu@gettarget} +\def\tabu@spread spread{\tabu@spreadtrue\def\tabu@halignto{spread}\tabu@gettarget} +\def\tabu@gettarget {\afterassignment\tabu@linegoaltarget \tabu@target } +\def\tabu@linegoaltarget {\futurelet\tabu@temp \tabu@linegoalt@rget } +\def\tabu@linegoalt@rget {% + \ifx \tabu@temp\LNGL@setlinegoal + \LNGL@setlinegoal \expandafter \@firstoftwo \fi % @gobbles \LNGL@setlinegoal + \tabu@begin +}% \tabu@linegoalt@rget +\def\tabu@begin #1#{% + \iftabu@measuring \expandafter\tabu@nestedmeasure \fi + \ifdim \tabu@target=\z@ \let\tabu@halignto \@empty + \else \edef\tabu@halignto{\tabu@halignto\the\tabu@target}% + \fi + \@testopt \tabu@tabu@ \tabu@aligndefault #1\@nil +}% \tabu@begin +\long\def\tabu@tabu@ [#1]#2\@nil #3{\tabu@setup + \def\tabu@align {#1}\def\tabu@savedpream{\NC@find #3}% + \tabu@ [\tabu@align ]#2{#3\tabu@rewritefirst }% +}% \tabu@tabu@ +\def\tabu@nestedmeasure {% + \ifodd 1\iftabu@spread \else \ifdim\tabu@target=\z@ \else 0 \fi\fi\relax + \tabu@spreadtrue + \else \begingroup \iffalse{\fi \ifnum0=`}\fi + \toks@{}\def\tabu@stack{b}% + \expandafter\tabu@collectbody\expandafter\tabu@quickrule + \expandafter\endgroup + \fi +}% \tabu@nestedmeasure +\def\tabu@quickrule {\indent\vrule height\z@ depth\z@ width\tabu@target} +%% \tabu@setup \tabu@init \tabu@indent +\def\tabu@setup{\tabu@alloc@ + \ifcase \tabu@nested + \ifmmode \else \iftabu@spread\else \ifdim\tabu@target=\z@ + \let\tabu@afterendpar \par + \fi\fi\fi + \def\tabu@aligndefault{c}\tabu@init \tabu@indent + \else % + \def\tabu@aligndefault{t}\let\tabudefaulttarget \linewidth + \fi + \let\tabu@thetarget \tabudefaulttarget \let\tabu@restored \@undefined + \edef\tabu@NC@list{\the\NC@list}\NC@list{\NC@do \tabu@rewritefirst}% + \everycr{}\let\@startpbox \tabu@startpbox % for nested tabu inside longtabu... + \let\@endpbox \tabu@endpbox % idem " " " " " " + \let\@tabarray \tabu@tabarray % idem " " " " " " + \tabu@setcleanup \tabu@setreset +}% \tabu@setup +\def\tabu@init{\tabu@starttimer \tabu@measuringfalse + \edef\tabu@hfuzz {\the\dimexpr\hfuzz+1sp}\global\tabu@footnotes{}% + \let\firsthline \tabu@firsthline \let\lasthline \tabu@lasthline + \let\firstline \tabu@firstline \let\lastline \tabu@lastline + \let\hline \tabu@hline \let\@xhline \tabu@xhline + \let\color \tabu@color \let\@arstrutbox \tabu@arstrutbox + \iftabu@colortbl\else\let\LT@@hline \tabu@LT@@hline \fi + \tabu@trivlist % + \let\@footnotetext \tabu@footnotetext \let\@xfootnotetext \tabu@xfootnotetext + \let\@xfootnote \tabu@xfootnote \let\centering \tabu@centering + \let\raggedright \tabu@raggedright \let\raggedleft \tabu@raggedleft + \let\tabudecimal \tabu@tabudecimal \let\Centering \tabu@Centering + \let\RaggedRight \tabu@RaggedRight \let\RaggedLeft \tabu@RaggedLeft + \let\justifying \tabu@justifying \let\rowfont \tabu@rowfont + \let\fbox \tabu@fbox \let\color@b@x \tabu@color@b@x + \let\tabu@@everycr \everycr \let\tabu@@everypar \everypar + \let\tabu@prepnext@tokORI \prepnext@tok\let\prepnext@tok \tabu@prepnext@tok + \let\tabu@multicolumnORI\multicolumn \let\multicolumn \tabu@multicolumn + \let\tabu@startpbox \@startpbox % for nested tabu inside longtabu pfff !!! + \let\tabu@endpbox \@endpbox % idem " " " " " " " + \let\tabu@tabarray \@tabarray % idem " " " " " " " + \tabu@adl@fix \let\endarray \tabu@endarray % colortbl & arydshln (delarray) + \iftabu@colortbl\CT@everycr\expandafter{\expandafter\iftabu@everyrow \the\CT@everycr \fi}\fi +}% \tabu@init +\def\tabu@indent{% correction for indentation + \ifdim \parindent>\z@\ifx \linewidth\tabudefaulttarget + \everypar\expandafter{% + \the\everypar\everypar\expandafter{\the\everypar}% + \setbox\z@=\lastbox + \ifdim\wd\z@>\z@ \edef\tabu@thetarget + {\the\dimexpr -\wd\z@+\tabudefaulttarget}\fi + \box\z@}% + \fi\fi +}% \tabu@indent +\def\tabu@setcleanup {% saves last global assignments + \ifodd 1\ifmmode \else \iftabu@long \else 0\fi\fi\relax + \def\tabu@aftergroupcleanup{% + \def\tabu@aftergroupcleanup{\aftergroup\tabu@cleanup}}% + \else + \def\tabu@aftergroupcleanup{% + \aftergroup\aftergroup\aftergroup\tabu@cleanup + \let\tabu@aftergroupcleanup \relax}% + \fi + \let\tabu@arc@Gsave \tabu@arc@G + \let\tabu@arc@G \tabu@arc@L % + \let\tabu@drsc@Gsave \tabu@drsc@G + \let\tabu@drsc@G \tabu@drsc@L % + \let\tabu@ls@Gsave \tabu@ls@G + \let\tabu@ls@G \tabu@ls@L % + \let\tabu@rc@Gsave \tabu@rc@G + \let\tabu@rc@G \tabu@rc@L % + \let\tabu@evr@Gsave \tabu@evr@G + \let\tabu@evr@G \tabu@evr@L % + \let\tabu@celllalign@save \tabu@celllalign + \let\tabu@cellralign@save \tabu@cellralign + \let\tabu@cellleft@save \tabu@cellleft + \let\tabu@cellright@save \tabu@cellright + \let\tabu@@celllalign@save \tabu@@celllalign + \let\tabu@@cellralign@save \tabu@@cellralign + \let\tabu@@cellleft@save \tabu@@cellleft + \let\tabu@@cellright@save \tabu@@cellright + \let\tabu@rowfontreset@save \tabu@rowfontreset + \let\tabu@@rowfontreset@save\tabu@@rowfontreset + \let\tabu@rowfontreset \@empty + \edef\tabu@alloc@save {\the\tabu@alloc}% restore at \tabu@reset + \edef\c@taburow@save {\the\c@taburow}% + \edef\tabu@naturalX@save {\the\tabu@naturalX}% + \let\tabu@naturalXmin@save \tabu@naturalXmin + \let\tabu@naturalXmax@save \tabu@naturalXmax + \let\tabu@mkarstrut@save \tabu@mkarstrut + \edef\tabu@clarstrut{% + \extrarowheight \the\dimexpr \ht\@arstrutbox-\ht\strutbox \relax + \extrarowdepth \the\dimexpr \dp\@arstrutbox-\dp\strutbox \relax + \let\noexpand\@arraystretch \@ne \noexpand\tabu@rearstrut}% +}% \tabu@setcleanup +\def\tabu@cleanup {\begingroup + \globaldefs\@ne \tabu@everyrowtrue + \let\tabu@arc@G \tabu@arc@Gsave + \let\CT@arc@ \tabu@arc@G + \let\tabu@drsc@G \tabu@drsc@Gsave + \let\CT@drsc@ \tabu@drsc@G + \let\tabu@ls@G \tabu@ls@Gsave + \let\tabu@ls@ \tabu@ls@G + \let\tabu@rc@G \tabu@rc@Gsave + \let\tabu@rc@ \tabu@rc@G + \let\CT@do@color \relax + \let\tabu@evr@G \tabu@evr@Gsave + \let\tabu@celllalign \tabu@celllalign@save + \let\tabu@cellralign \tabu@cellralign@save + \let\tabu@cellleft \tabu@cellleft@save + \let\tabu@cellright \tabu@cellright@save + \let\tabu@@celllalign \tabu@@celllalign@save + \let\tabu@@cellralign \tabu@@cellralign@save + \let\tabu@@cellleft \tabu@@cellleft@save + \let\tabu@@cellright \tabu@@cellright@save + \let\tabu@rowfontreset \tabu@rowfontreset@save + \let\tabu@@rowfontreset \tabu@@rowfontreset@save + \tabu@naturalX =\tabu@naturalX@save + \let\tabu@naturalXmax \tabu@naturalXmax@save + \let\tabu@naturalXmin \tabu@naturalXmin@save + \let\tabu@mkarstrut \tabu@mkarstrut@save + \c@taburow =\c@taburow@save + \ifcase \tabu@nested \tabu@alloc \m@ne\fi + \endgroup % + \ifcase \tabu@nested + \the\tabu@footnotes \global\tabu@footnotes{}% + \tabu@afterendpar \tabu@elapsedtime + \fi + \tabu@clarstrut + \everyrow\expandafter {\tabu@evr@G}% +}% \tabu@cleanup +\let\tabu@afterendpar \relax +\def\tabu@setreset {% + \edef\tabu@savedparams {% \relax for \tabu@message@save + \ifmmode \col@sep \the\arraycolsep + \else \col@sep \the\tabcolsep \fi \relax + \arrayrulewidth \the\arrayrulewidth \relax + \doublerulesep \the\doublerulesep \relax + \extratabsurround \the\extratabsurround \relax + \extrarowheight \the\extrarowheight \relax + \extrarowdepth \the\extrarowdepth \relax + \abovetabulinesep \the\abovetabulinesep \relax + \belowtabulinesep \the\belowtabulinesep \relax + \def\noexpand\arraystretch{\arraystretch}% + \ifdefined\minrowclearance \minrowclearance\the\minrowclearance\relax\fi}% + \begingroup + \@temptokena\expandafter{\tabu@savedparams}% => only for \savetabu / \usetabu + \ifx \tabu@arc@L\relax \else \tabu@setsave \tabu@arc@L \fi + \ifx \tabu@drsc@L\relax \else \tabu@setsave \tabu@drsc@L \fi + \tabu@setsave \tabu@ls@L \tabu@setsave \tabu@evr@L + \expandafter \endgroup \expandafter + \def\expandafter\tabu@saved@ \expandafter{\the\@temptokena + \let\tabu@arc@G \tabu@arc@L + \let\tabu@drsc@G \tabu@drsc@L + \let\tabu@ls@G \tabu@ls@L + \let\tabu@rc@G \tabu@rc@L + \let\tabu@evr@G \tabu@evr@L}% + \def\tabu@reset{\tabu@savedparams + \tabu@everyrowtrue \c@taburow \z@ + \let\CT@arc@ \tabu@arc@L + \let\CT@drsc@ \tabu@drsc@L + \let\tabu@ls@ \tabu@ls@L + \let\tabu@rc@ \tabu@rc@L + \global\tabu@alloc \tabu@alloc@save + \everyrow\expandafter{\tabu@evr@L}}% +}% \tabu@reset +\def\tabu@setsave #1{\expandafter\tabu@sets@ve #1\@nil{#1}} +\long\def\tabu@sets@ve #1\@nil #2{\@temptokena\expandafter{\the\@temptokena \def#2{#1}}} +%% The Rewriting Process ------------------------------------------- +\def\tabu@newcolumntype #1{% + \expandafter\tabu@new@columntype + \csname NC@find@\string#1\expandafter\endcsname + \csname NC@rewrite@\string#1\endcsname + {#1}% +}% \tabu@newcolumntype +\def\tabu@new@columntype #1#2#3{% + \def#1##1#3{\NC@{##1}}% + \let#2\relax \newcommand*#2% +}% \tabu@new@columntype +\def\tabu@privatecolumntype #1{% + \expandafter\tabu@private@columntype + \csname NC@find@\string#1\expandafter\endcsname + \csname NC@rewrite@\string#1\expandafter\endcsname + \csname tabu@NC@find@\string#1\expandafter\endcsname + \csname tabu@NC@rewrite@\string#1\endcsname + {#1}% +}% \tabu@privatecolumntype +\def\tabu@private@columntype#1#2#3#4{% + \g@addto@macro\tabu@privatecolumns{\let#1#3\let#2#4}% + \tabu@new@columntype#3#4% +}% \tabu@private@columntype +\let\tabu@privatecolumns \@empty +\newcommand*\tabucolumn [1]{\expandafter \def \expandafter + \tabu@highprioritycolumns\expandafter{\tabu@highprioritycolumns + \NC@do #1}}% +\let\tabu@highprioritycolumns \@empty +%% The | ``column'' : rewriting process -------------------------- +\tabu@privatecolumntype |{\tabu@rewritevline} +\newcommand*\tabu@rewritevline[1][]{\tabu@vlinearg{#1}% + \expandafter \NC@find \tabu@rewritten} +\def\tabu@lines #1{% + \ifx|#1\else \tabu@privatecolumntype #1{\tabu@rewritevline}\fi + \NC@list\expandafter{\the\NC@list \NC@do #1}% +}% \tabu@lines@ +\def\tabu@vlinearg #1{% + \ifx\\#1\\\def\tabu@thestyle {\tabu@ls@}% + \else\tabu@getline {#1}% + \fi + \def\tabu@rewritten ##1{\def\tabu@rewritten{!{##1\tabu@thevline}}% + }\expandafter\tabu@rewritten\expandafter{\tabu@thestyle}% + \expandafter \tabu@keepls \tabu@thestyle \@nil +}% \tabu@vlinearg +\def\tabu@keepls #1\@nil{% + \ifcat $\@cdr #1\@nil $% + \ifx \relax#1\else + \ifx \tabu@ls@#1\else + \let#1\relax + \xdef\tabu@mkpreambuffer{\tabu@mkpreambuffer + \tabu@savels\noexpand#1}\fi\fi\fi +}% \tabu@keepls +\def\tabu@thevline {\begingroup + \ifdefined\tabu@leaders + \setbox\@tempboxa=\vtop to\dimexpr + \ht\@arstrutbox+\dp\@arstrutbox{{\tabu@thevleaders}}% + \ht\@tempboxa=\ht\@arstrutbox \dp\@tempboxa=\dp\@arstrutbox + \box\@tempboxa + \else + \tabu@thevrule + \fi \endgroup +}% \tabu@thevline +\def\tabu@savels #1{% + \expandafter\let\csname\string#1\endcsname #1% + \expandafter\def\expandafter\tabu@reset\expandafter{\tabu@reset + \tabu@resetls#1}}% +\def\tabu@resetls #1{\expandafter\let\expandafter#1\csname\string#1\endcsname}% +%% \multicolumn inside tabu environment ----------------------------- +\tabu@newcolumntype \tabu@rewritemulticolumn{% + \aftergroup \tabu@endrewritemulticolumn % after \@mkpream group + \NC@list{\NC@do *}\tabu@textbar \tabu@lines + \tabu@savedecl + \tabu@privatecolumns + \NC@list\expandafter{\the\expandafter\NC@list \tabu@NC@list}% + \let\tabu@savels \relax + \NC@find +}% \tabu@rewritemulticolumn +\def\tabu@endrewritemulticolumn{\gdef\tabu@mkpreambuffer{}\endgroup} +\def\tabu@multicolumn{\tabu@ifenvir \tabu@multic@lumn \tabu@multicolumnORI} +\long\def\tabu@multic@lumn #1#2#3{\multispan{#1}\begingroup + \tabu@everyrowtrue + \NC@list{\NC@do \tabu@rewritemulticolumn}% + \expandafter\@gobbletwo % gobbles \multispan{#1} + \tabu@multicolumnORI{#1}{\tabu@rewritemulticolumn #2}% + {\iftabuscantokens \tabu@rescan \else \expandafter\@firstofone \fi + {#3}}% +}% \tabu@multic@lumn +%% The X column(s): rewriting process ----------------------------- +\tabu@privatecolumntype X[1][]{\begingroup \tabu@siunitx{\endgroup \tabu@rewriteX {#1}}} +\def\tabu@nosiunitx #1{#1{}{}\expandafter \NC@find \tabu@rewritten } +\def\tabu@siunitx #1{\@ifnextchar \bgroup + {\tabu@rewriteX@Ss{#1}} + {\tabu@nosiunitx{#1}}} +\def\tabu@rewriteX@Ss #1#2{\@temptokena{}% + \@defaultunits \let\tabu@temp =#2\relax\@nnil + \ifodd 1\ifx S\tabu@temp \else \ifx s\tabu@temp \else 0 \fi\fi + \def\NC@find{\def\NC@find >####1####2<####3\relax{#1 {####1}{####3}% + }\expandafter\NC@find \the\@temptokena \relax + }\expandafter\NC@rewrite@S \@gobble #2\relax + \else \tabu@siunitxerror + \fi + \expandafter \NC@find \tabu@rewritten +}% \tabu@rewriteX@Ss +\def\tabu@siunitxerror {\PackageError{tabu}{Not a S nor s column ! + \MessageBreak X column can only embed siunitx S or s columns}\@ehd +}% \tabu@siunitxerror +\def\tabu@rewriteX #1#2#3{\tabu@Xarg {#1}{#2}{#3}% + \iftabu@measuring + \else \tabu@measuringtrue % first X column found in the preamble + \let\@halignto \relax \let\tabu@halignto \relax + \iftabu@spread \tabu@spreadtarget \tabu@target \tabu@target \z@ + \else \tabu@spreadtarget \z@ \fi + \ifdim \tabu@target=\z@ + \setlength\tabu@target \tabu@thetarget + \tabu@message{\tabu@message@defaulttarget}% + \else \tabu@message{\tabu@message@target}\fi + \fi +}% \tabu@rewriteX +\def\tabu@rewriteXrestore #1#2#3{\let\@halignto \relax + \def\tabu@rewritten{l}} +\def\tabu@Xarg #1#2#3{% + \advance\tabu@Xcol \@ne \let\tabu@Xlcr \@empty + \let\tabu@Xdisp \@empty \let\tabu@Xmath \@empty + \ifx\\#1\\% + \def\tabu@rewritten{p}\tabucolX \p@ % + \else + \let\tabu@rewritten \@empty \let\tabu@temp \@empty \tabucolX \z@ + \tabu@Xparse {}#1\relax + \fi + \tabu@Xrewritten{#2}{#3}% +}% \tabu@Xarg +\def\tabu@Xparse #1{\futurelet\@let@token \tabu@Xtest} +\expandafter\def\expandafter\tabu@Xparsespace\space{\tabu@Xparse{}} +\def\tabu@Xtest{% + \ifcase \ifx \relax\@let@token \z@ \else + \if ,\@let@token \m@ne\else + \if p\@let@token 1\else + \if m\@let@token 2\else + \if b\@let@token 3\else + \if l\@let@token 4\else + \if c\@let@token 5\else + \if r\@let@token 6\else + \if j\@let@token 7\else + \if L\@let@token 8\else + \if C\@let@token 9\else + \if R\@let@token 10\else + \if J\@let@token 11\else + \ifx \@sptoken\@let@token 12\else + \if .\@let@token 13\else + \if -\@let@token 13\else + \ifcat $\@let@token 14\else + 15\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\relax + \or \tabu@Xtype {p}% + \or \tabu@Xtype {m}% + \or \tabu@Xtype {b}% + \or \tabu@Xalign \raggedright\relax + \or \tabu@Xalign \centering\relax + \or \tabu@Xalign \raggedleft\relax + \or \tabu@Xalign \tabu@justify\relax + \or \tabu@Xalign \RaggedRight\raggedright + \or \tabu@Xalign \Centering\centering + \or \tabu@Xalign \RaggedLeft\raggedleft + \or \tabu@Xalign \justifying\tabu@justify + \or \expandafter \tabu@Xparsespace + \or \expandafter \tabu@Xcoef + \or \expandafter \tabu@Xm@th + \or \tabu@Xcoef{}% + \else\expandafter \tabu@Xparse + \fi +}% \tabu@Xtest +\def\tabu@Xalign #1#2{% + \ifx \tabu@Xlcr\@empty \else \PackageWarning{tabu} + {Duplicate horizontal alignment specification}\fi + \ifdefined#1\def\tabu@Xlcr{#1}\let#1\relax + \else \def\tabu@Xlcr{#2}\let#2\relax\fi + \expandafter\tabu@Xparse +}% \tabu@Xalign +\def\tabu@Xtype #1{% + \ifx \tabu@rewritten\@empty \else \PackageWarning{tabu} + {Duplicate vertical alignment specification}\fi + \def\tabu@rewritten{#1}\expandafter\tabu@Xparse +}% \tabu@Xtype +\def\tabu@Xcoef#1{\edef\tabu@temp{\tabu@temp#1}% + \afterassignment\tabu@Xc@ef \tabu@cnt\number\if-#10\fi +}% \tabu@Xcoef +\def\tabu@Xc@ef{\advance\tabucolX \tabu@temp\the\tabu@cnt\p@ + \tabu@Xparse{}% +}% \tabu@Xc@ef +\def\tabu@Xm@th #1{\futurelet \@let@token \tabu@Xd@sp} +\def\tabu@Xd@sp{\let\tabu@Xmath=$% + \ifx $\@let@token \def\tabu@Xdisp{\displaystyle}% + \expandafter\tabu@Xparse + \else \expandafter\tabu@Xparse\expandafter{\expandafter}% + \fi +}% \tabu@Xd@sp +\def\tabu@Xrewritten {% + \ifx \tabu@rewritten\@empty \def\tabu@rewritten{p}\fi + \ifdim \tabucolX<\z@ \tabu@negcoeftrue + \else\ifdim \tabucolX=\z@ \tabucolX \p@ + \fi\fi + \edef\tabu@temp{{\the\tabu@Xcol}{\tabu@strippt\tabucolX}}% + \edef\tabu@Xcoefs{\tabu@Xcoefs \tabu@ \tabu@temp}% + \edef\tabu@rewritten ##1##2{\def\noexpand\tabu@rewritten{% + >{\tabu@Xlcr \ifx$\tabu@Xmath$\tabu@Xdisp\fi ##1}% + \tabu@rewritten {\tabu@hsize \tabu@temp}% + <{##2\ifx$\tabu@Xmath$\fi}}% + }\tabu@rewritten +}% \tabu@Xrewritten +\def\tabu@hsize #1#2{% + \ifdim #2\p@<\z@ + \ifdim \tabucolX=\maxdimen \tabu@wd{#1}\else + \ifdim \tabu@wd{#1}<-#2\tabucolX \tabu@wd{#1}\else -#2\tabucolX\fi + \fi + \else #2\tabucolX + \fi +}% \tabu@hsize +%% \usetabu and \preamble: rewriting process --------------------- +\tabu@privatecolumntype \usetabu [1]{% + \ifx\\#1\\\tabu@saveerr{}\else + \@ifundefined{tabu@saved@\string#1} + {\tabu@saveerr{#1}} + {\let\tabu@rewriteX \tabu@rewriteXrestore + \csname tabu@saved@\string#1\expandafter\endcsname\expandafter\@ne}% + \fi +}% \NC@rewrite@\usetabu +\tabu@privatecolumntype \preamble [1]{% + \ifx\\#1\\\tabu@saveerr{}\else + \@ifundefined{tabu@saved@\string#1} + {\tabu@saveerr{#1}} + {\csname tabu@saved@\string#1\expandafter\endcsname\expandafter\z@}% + \fi +}% \NC@rewrite@\preamble +%% Controlling the rewriting process ------------------------------- +\tabu@newcolumntype \tabu@rewritefirst{% + \iftabu@long \aftergroup \tabu@longpream % + \else \aftergroup \tabu@pream + \fi + \let\tabu@ \relax \let\tabu@hsize \relax + \let\tabu@Xcoefs \@empty \let\tabu@savels \relax + \tabu@Xcol \z@ \tabu@cnt \tw@ + \gdef\tabu@mkpreambuffer{\tabu@{}}\tabu@measuringfalse + \global\setbox\@arstrutbox \box\@arstrutbox + \NC@list{\NC@do *}\tabu@textbar \tabu@lines + \NC@list\expandafter{\the\NC@list \NC@do X}% + \iftabu@siunitx % + \NC@list\expandafter{\the\NC@list \NC@do S\NC@do s}\fi + \NC@list\expandafter{\the\expandafter\NC@list \tabu@highprioritycolumns}% + \expandafter\def\expandafter\tabu@NC@list\expandafter{% + \the\expandafter\NC@list \tabu@NC@list}% % * | X S + \NC@list\expandafter{\expandafter \NC@do \expandafter\usetabu + \expandafter \NC@do \expandafter\preamble + \the\NC@list \NC@do \tabu@rewritemiddle + \NC@do \tabu@rewritelast}% + \tabu@savedecl + \tabu@privatecolumns + \edef\tabu@prev{\the\@temptokena}\NC@find \tabu@rewritemiddle +}% NC@rewrite@\tabu@rewritefirst +\tabu@newcolumntype \tabu@rewritemiddle{% + \edef\tabu@temp{\the\@temptokena}\NC@find \tabu@rewritelast +}% \NC@rewrite@\tabu@rewritemiddle +\tabu@newcolumntype \tabu@rewritelast{% + \ifx \tabu@temp\tabu@prev \advance\tabu@cnt \m@ne + \NC@list\expandafter{\tabu@NC@list \NC@do \tabu@rewritemiddle + \NC@do \tabu@rewritelast}% + \else \let\tabu@prev\tabu@temp + \fi + \ifcase \tabu@cnt \expandafter\tabu@endrewrite + \else \expandafter\NC@find \expandafter\tabu@rewritemiddle + \fi +}% \NC@rewrite@\tabu@rewritelast +%% Choosing the strategy -------------------------------------------- +\def\tabu@endrewrite {% + \let\tabu@temp \NC@find + \ifx \@arrayright\relax \let\@arrayright \@empty \fi + \count@=% + \ifx \@finalstrut\tabu@finalstrut \z@ % outer in mode 0 print + \iftabu@measuring + \xdef\tabu@mkpreambuffer{\tabu@mkpreambuffer + \tabu@target \csname tabu@\the\tabu@nested.T\endcsname + \tabucolX \csname tabu@\the\tabu@nested.X\endcsname + \edef\@halignto {\ifx\@arrayright\@empty to\tabu@target\fi}}% + \fi + \else\iftabu@measuring 4 % X columns + \xdef\tabu@mkpreambuffer{\tabu@{\tabu@mkpreambuffer + \tabu@target \the\tabu@target + \tabu@spreadtarget \the\tabu@spreadtarget}% + \def\noexpand\tabu@Xcoefs{\tabu@Xcoefs}% + \edef\tabu@halignto{\ifx \@arrayright\@empty to\tabu@target\fi}}% + \let\tabu@Xcoefs \relax + \else\ifcase\tabu@nested \thr@@ % outer, no X + \global\let\tabu@afterendpar \relax + \else \@ne % inner, no X, outer in mode 1 or 2 + \fi + \ifdefined\tabu@usetabu + \else \ifdim\tabu@target=\z@ + \else \let\tabu@temp \tabu@extracolsep + \fi\fi + \fi + \fi + \xdef\tabu@mkpreambuffer{\count@ \the\count@ \tabu@mkpreambuffer}% + \tabu@temp +}% \tabu@endrewrite +\def\tabu@extracolsep{\@defaultunits \expandafter\let + \expandafter\tabu@temp \expandafter=\the\@temptokena \relax\@nnil + \ifx \tabu@temp\@sptoken + \expandafter\tabu@gobblespace \expandafter\tabu@extracolsep + \else + \edef\tabu@temp{\noexpand\NC@find + \if |\noexpand\tabu@temp @% + \else\if !\noexpand\tabu@temp @% + \else !% + \fi\fi + {\noexpand\extracolsep\noexpand\@flushglue}}% + \fi + \tabu@temp +}% \tabu@extrac@lsep +%% Implementing the strategy ---------------------------------------- +\long\def\tabu@pream #1\@preamble {% + \let\tabu@ \tabu@@ \tabu@mkpreambuffer \tabu@aftergroupcleanup + \NC@list\expandafter {\tabu@NC@list}% in case of nesting... + \ifdefined\tabu@usetabu \tabu@usetabu \tabu@target \z@ \fi + \let\tabu@savedpreamble \@preamble + \global\let\tabu@elapsedtime \relax + \tabu@thebody ={#1\tabu@aftergroupcleanup}% + \tabu@thebody =\expandafter{\the\expandafter\tabu@thebody + \@preamble}% + \edef\tabuthepreamble {\the\tabu@thebody}% ( no @ allowed for \scantokens ) + \tabu@select +}% \tabu@pream +\long\def\tabu@longpream #1\LT@bchunk #2\LT@bchunk{% + \let\tabu@ \tabu@@ \tabu@mkpreambuffer \tabu@aftergroupcleanup + \NC@list\expandafter {\tabu@NC@list}% in case of nesting... + \let\tabu@savedpreamble \@preamble + \global\let\tabu@elapsedtime \relax + \tabu@thebody ={#1\LT@bchunk #2\tabu@aftergroupcleanup \LT@bchunk}% + \edef\tabuthepreamble {\the\tabu@thebody}% ( no @ allowed for \scantokens ) + \tabu@select +}% \tabu@longpream +\def\tabu@select {% + \ifnum\tabu@nested>\z@ \tabuscantokensfalse \fi + \ifnum \count@=\@ne \iftabu@measuring \count@=\tw@ \fi\fi + \ifcase \count@ + \global\let\tabu@elapsedtime \relax + \tabu@seteverycr + \expandafter \tabuthepreamble % vertical adjustment (inherited from outer) + \or % exit in vertical measure + struts per cell because no X and outer in mode 3 + \tabu@evr{\tabu@verticalinit}\tabu@celllalign@def{\tabu@verticalmeasure}% + \def\tabu@cellralign{\tabu@verticalspacing}% + \tabu@seteverycr + \expandafter \tabuthepreamble + \or % exit without measure because no X and outer in mode 4 + \tabu@evr{}\tabu@celllalign@def{}\let\tabu@cellralign \@empty + \tabu@seteverycr + \expandafter \tabuthepreamble + \else % needs trials + \tabu@evr{}\tabu@celllalign@def{}\let\tabu@cellralign \@empty + \tabu@savecounters + \expandafter \tabu@setstrategy + \fi +}% \tabu@select +\def\tabu@@ {\gdef\tabu@mkpreambuffer} +%% Protections to set up before trials ------------------------------ +\def\tabu@setstrategy {\begingroup % + \tabu@trialh@@k \tabu@cnt \z@ % number of trials + \hbadness \@M \let\hbadness \@tempcnta + \hfuzz \maxdimen \let\hfuzz \@tempdima + \let\write \tabu@nowrite\let\GenericError \tabu@GenericError + \let\savetabu \@gobble \let\tabudefaulttarget \linewidth + \let\@footnotetext \@gobble \let\@xfootnote \tabu@xfootnote + \let\color \tabu@nocolor\let\rowcolor \tabu@norowcolor + \let\tabu@aftergroupcleanup \relax % only after the last trial + \tabu@mkpreambuffer + \ifnum \count@>\thr@@ \let\@halignto \@empty \tabucolX@init + \def\tabu@lasttry{\m@ne\p@}\fi + \begingroup \iffalse{\fi \ifnum0=`}\fi + \toks@{}\def\tabu@stack{b}\iftabuscantokens \endlinechar=10 \obeyspaces \fi % + \tabu@collectbody \tabu@strategy % +}% \tabu@setstrategy +\def\tabu@savecounters{% + \def\@elt ##1{\csname c@##1\endcsname\the\csname c@##1\endcsname}% + \edef\tabu@clckpt {\begingroup \globaldefs=\@ne \cl@@ckpt \endgroup}\let\@elt \relax +}% \tabu@savecounters +\def\tabucolX@init {% \tabucolX <= \tabu@target / (sum coefs > 0) + \dimen@ \z@ \tabu@Xsum \z@ \tabucolX \z@ \let\tabu@ \tabu@Xinit \tabu@Xcoefs + \ifdim \dimen@>\z@ + \@tempdima \dimexpr \tabu@target *\p@/\dimen@ + \tabu@hfuzz\relax + \ifdim \tabucolX<\@tempdima \tabucolX \@tempdima \fi + \fi +}% \tabucolX@init +\def\tabu@Xinit #1#2{\tabu@Xcol #1 \advance \tabu@Xsum + \ifdim #2\p@>\z@ #2\p@ \advance\dimen@ #2\p@ + \else -#2\p@ \tabu@negcoeftrue + \@tempdima \dimexpr \tabu@target*\p@/\dimexpr-#2\p@\relax \relax + \ifdim \tabucolX<\@tempdima \tabucolX \@tempdima \fi + \tabu@wddef{#1}{0pt}% + \fi +}% \tabu@Xinit +%% Collecting the environment body ---------------------------------- +\long\def\tabu@collectbody #1#2\end #3{% + \edef\tabu@stack{\tabu@pushbegins #2\begin\end\expandafter\@gobble\tabu@stack}% + \ifx \tabu@stack\@empty + \toks@\expandafter{\expandafter\tabu@thebody\expandafter{\the\toks@ #2}% + \def\tabu@end@envir{\end{#3}}% + \iftabuscantokens + \iftabu@long \def\tabu@endenvir {\end{#3}\tabu@gobbleX}% + \else \def\tabu@endenvir {\let\endarray \@empty + \end{#3}\tabu@gobbleX}% + \fi + \else \def\tabu@endenvir {\end{#3}}\fi}% + \let\tabu@collectbody \tabu@endofcollect + \else\def\tabu@temp{#3}% + \ifx \tabu@temp\@empty \toks@\expandafter{\the\toks@ #2\end }% + \else \ifx\tabu@temp\tabu@@spxiii \toks@\expandafter{\the\toks@ #2\end #3}% + \else \ifx\tabu@temp\tabu@X \toks@\expandafter{\the\toks@ #2\end #3}% + \else \toks@\expandafter{\the\toks@ #2\end{#3}}% + \fi\fi\fi + \fi + \tabu@collectbody{#1}% +}% \tabu@collectbody +\long\def\tabu@pushbegins#1\begin#2{\ifx\end#2\else b\expandafter\tabu@pushbegins\fi}% +\def\tabu@endofcollect #1{\ifnum0=`{}\fi + \expandafter\endgroup \the\toks@ #1% +}% \tabu@endofcollect +%% The trials: switching between strategies ------------------------- +\def\tabu@strategy {\relax % stops \count@ assignment ! + \ifcase\count@ % case 0 = print with vertical adjustment (outer is finished) + \expandafter \tabu@endoftrials + \or % case 1 = exit in vertical measure (outer in mode 3) + \expandafter\xdef\csname tabu@\the\tabu@nested.T\endcsname{\the\tabu@target}% + \expandafter\xdef\csname tabu@\the\tabu@nested.X\endcsname{\the\tabucolX}% + \expandafter \tabu@endoftrials + \or % case 2 = exit with a rule replacing the table (outer in mode 4) + \expandafter \tabu@quickend + \or % case 3 = outer is in mode 3 because of no X + \begingroup + \tabu@evr{\tabu@verticalinit}\tabu@celllalign@def{\tabu@verticalmeasure}% + \def\tabu@cellralign{\tabu@verticalspacing}% + \expandafter \tabu@measuring + \else % case 4 = horizontal measure + \begingroup + \global\let\tabu@elapsedtime \tabu@message@etime + \long\def\multicolumn##1##2##3{\multispan{##1}}% + \let\tabu@startpboxORI \@startpbox + \iftabu@spread + \def\tabu@naturalXmax {\z@}% + \let\tabu@naturalXmin \tabu@naturalXmax + \tabu@evr{\global\tabu@naturalX \z@}% + \let\@startpbox \tabu@startpboxmeasure + \else\iftabu@negcoef + \let\@startpbox \tabu@startpboxmeasure + \else \let\@startpbox \tabu@startpboxquick + \fi\fi + \expandafter \tabu@measuring + \fi +}% \tabu@strategy +\def\tabu@measuring{\expandafter \tabu@trial \expandafter + \count@ \the\count@ \tabu@endtrial +}% \tabu@measuring +\def\tabu@trial{\iftabu@long \tabu@longtrial \else \tabu@shorttrial \fi} +\def\tabu@shorttrial {\setbox\tabu@box \hbox\bgroup \tabu@seteverycr + \ifx \tabu@savecounters\relax \else + \let\tabu@savecounters \relax \tabu@clckpt \fi + $\iftabuscantokens \tabu@rescan \else \expandafter\@secondoftwo \fi + \expandafter{\expandafter \tabuthepreamble + \the\tabu@thebody + \csname tabu@adl@endtrial\endcsname + \endarray}$\egroup % got \tabu@box +}% \tabu@shorttrial +\def\tabu@longtrial {\setbox\tabu@box \hbox\bgroup \tabu@seteverycr + \ifx \tabu@savecounters\relax \else + \let\tabu@savecounters \relax \tabu@clckpt \fi + \iftabuscantokens \tabu@rescan \else \expandafter\@secondoftwo \fi + \expandafter{\expandafter \tabuthepreamble + \the\tabu@thebody + \tabuendlongtrial}\egroup % got \tabu@box +}% \tabu@longtrial +\def\tabuendlongtrial{% no @ allowed for \scantokens + \LT@echunk \global\setbox\@ne \hbox{\unhbox\@ne}\kern\wd\@ne + \LT@get@widths +}% \tabuendlongtrial +\def\tabu@adl@endtrial{% + \crcr \noalign{\global\adl@ncol \tabu@nbcols}}% anything global is crap, junky and fails ! +\def\tabu@seteverycr {\tabu@reset + \everycr \expandafter{\the\everycr \tabu@everycr}% + \let\everycr \tabu@noeverycr % +}% \tabu@seteverycr +\def\tabu@noeverycr{{\aftergroup\tabu@restoreeverycr \afterassignment}\toks@} +\def\tabu@restoreeverycr {\let\everycr \tabu@@everycr} +\def\tabu@everycr {\iftabu@everyrow \noalign{\tabu@everyrow}\fi} +\def\tabu@endoftrials {% + \iftabuscantokens \expandafter\@firstoftwo + \else \expandafter\@secondoftwo + \fi + {\expandafter \tabu@closetrialsgroup \expandafter + \tabu@rescan \expandafter{% + \expandafter\tabuthepreamble + \the\expandafter\tabu@thebody + \iftabu@long \else \endarray \fi}} + {\expandafter\tabu@closetrialsgroup \expandafter + \tabuthepreamble + \the\tabu@thebody}% + \tabu@endenvir % Finish ! +}% \tabu@endoftrials +\def\tabu@closetrialsgroup {% + \toks@\expandafter{\tabu@endenvir}% + \edef\tabu@bufferX{\endgroup + \tabucolX \the\tabucolX + \tabu@target \the\tabu@target + \tabu@cnt \the\tabu@cnt + \def\noexpand\tabu@endenvir{\the\toks@}% + %Quid de \@halignto = \tabu@halignto ?? + }% \tabu@bufferX + \tabu@bufferX + \ifcase\tabu@nested % print out (outer in mode 0) + \global\tabu@cnt \tabu@cnt + \tabu@evr{\tabu@verticaldynamicadjustment}% + \tabu@celllalign@def{\everypar{}}\let\tabu@cellralign \@empty + \let\@finalstrut \tabu@finalstrut + \else % vertical measure of nested tabu + \tabu@evr{\tabu@verticalinit}% + \tabu@celllalign@def{\tabu@verticalmeasure}% + \def\tabu@cellralign{\tabu@verticalspacing}% + \fi + \tabu@clckpt \let\@halignto \tabu@halignto + \let\@halignto \@empty + \tabu@seteverycr + \ifdim \tabustrutrule>\z@ \ifnum\tabu@nested=\z@ + \setbox\@arstrutbox \box\voidb@x % force \@arstrutbox to be rebuilt (visible struts) + \fi\fi +}% \tabu@closetrialsgroup +\def\tabu@quickend {\expandafter \endgroup \expandafter + \tabu@target \the\tabu@target \tabu@quickrule + \let\endarray \relax \tabu@endenvir +}% \tabu@quickend +\def\tabu@endtrial {\relax % stops \count@ assignment ! + \ifcase \count@ \tabu@err % case 0 = impossible here + \or \tabu@err % case 1 = impossible here + \or \tabu@err % case 2 = impossible here + \or % case 3 = outer goes into mode 0 + \def\tabu@bufferX{\endgroup}\count@ \z@ + \else % case 4 = outer goes into mode 3 + \iftabu@spread \tabu@spreadarith % inner into mode 1 (outer in mode 3) + \else \tabu@arith % or 2 (outer in mode 4) + \fi + \count@=% + \ifcase\tabu@nested \thr@@ % outer goes into mode 3 + \else\iftabu@measuring \tw@ % outer is in mode 4 + \else \@ne % outer is in mode 3 + \fi\fi + \edef\tabu@bufferX{\endgroup + \tabucolX \the\tabucolX + \tabu@target \the\tabu@target}% + \fi + \expandafter \tabu@bufferX \expandafter + \count@ \the\count@ \tabu@strategy +}% \tabu@endtrial +\def\tabu@err{\errmessage{(tabu) Internal impossible error! (\count@=\the\count@)}} +%% The algorithms: compute the widths / stop or go on --------------- +\def\tabu@arithnegcoef {% + \@tempdima \z@ \dimen@ \z@ \let\tabu@ \tabu@arith@negcoef \tabu@Xcoefs +}% \tabu@arithnegcoef +\def\tabu@arith@negcoef #1#2{% + \ifdim #2\p@>\z@ \advance\dimen@ #2\p@ % saturated by definition + \advance\@tempdima #2\tabucolX + \else + \ifdim -#2\tabucolX <\tabu@wd{#1}% c_i X < natural width <= \tabu@target-> saturated + \advance\dimen@ -#2\p@ + \advance\@tempdima -#2\tabucolX + \else + \advance\@tempdima \tabu@wd{#1}% natural width <= c_i X => neutralised + \ifdim \tabu@wd{#1}<\tabu@target \else % neutralised + \advance\dimen@ -#2\p@ % saturated (natural width = tabu@target) + \fi + \fi + \fi +}% \tabu@arith@negcoef +\def\tabu@givespace #1#2{% here \tabu@DELTA < \z@ + \ifdim \@tempdima=\z@ + \tabu@wddef{#1}{\the\dimexpr -\tabu@DELTA*\p@/\tabu@Xsum}% + \else + \tabu@wddef{#1}{\the\dimexpr \tabu@hsize{#1}{#2} + *(\p@ -\tabu@DELTA*\p@/\@tempdima)/\p@\relax}% + \fi +}% \tabu@givespace +\def\tabu@arith {\advance\tabu@cnt \@ne + \ifnum \tabu@cnt=\@ne \tabu@message{\tabu@titles}\fi + \tabu@arithnegcoef + \@tempdimb \dimexpr \wd\tabu@box -\@tempdima \relax % + \tabu@DELTA = \dimexpr \wd\tabu@box - \tabu@target \relax + \tabu@message{\tabu@message@arith}% + \ifdim \tabu@DELTA <\tabu@hfuzz + \ifdim \tabu@DELTA<\z@ % wd (tabu)<\tabu@target ? + \let\tabu@ \tabu@givespace \tabu@Xcoefs + \advance\@tempdima \@tempdimb \advance\@tempdima -\tabu@DELTA % for message + \else % already converged: nothing to do but nearly impossible... + \fi + \tabucolX \maxdimen + \tabu@measuringfalse + \else % need for narrower X columns + \tabucolX =\dimexpr (\@tempdima -\tabu@DELTA) *\p@/\tabu@Xsum \relax + \tabu@measuringtrue + \@whilesw \iftabu@measuring\fi {% + \advance\tabu@cnt \@ne + \tabu@arithnegcoef + \tabu@DELTA =\dimexpr \@tempdima+\@tempdimb -\tabu@target \relax % always < 0 here + \tabu@message{\tabu@header + \tabu@msgalign \tabucolX { }{ }{ }{ }{ }\@@ + \tabu@msgalign \@tempdima+\@tempdimb { }{ }{ }{ }{ }\@@ + \tabu@msgalign \tabu@target { }{ }{ }{ }{ }\@@ + \tabu@msgalign@PT \dimen@ { }{}{}{}{}{}{}\@@ + \ifdim -\tabu@DELTA<\tabu@hfuzz \tabu@spaces target ok\else + \tabu@msgalign \dimexpr -\tabu@DELTA *\p@/\dimen@ {}{}{}{}{}\@@ + \fi}% + \ifdim -\tabu@DELTA<\tabu@hfuzz + \advance\@tempdima \@tempdimb % for message + \tabu@measuringfalse + \else + \advance\tabucolX \dimexpr -\tabu@DELTA *\p@/\dimen@ \relax + \fi + }% + \fi + \tabu@message{\tabu@message@reached}% + \edef\tabu@bufferX{\endgroup \tabu@cnt \the\tabu@cnt + \tabucolX \the\tabucolX + \tabu@target \the\tabu@target}% +}% \tabu@arith +\def\tabu@spreadarith {% + \dimen@ \z@ \@tempdima \tabu@naturalXmax \let\tabu@ \tabu@spread@arith \tabu@Xcoefs + \edef\tabu@naturalXmin {\the\dimexpr\tabu@naturalXmin*\dimen@/\p@}% + \@tempdimc =\dimexpr \wd\tabu@box -\tabu@naturalXmax+\tabu@naturalXmin \relax + \iftabu@measuring + \tabu@target =\dimexpr \@tempdimc+\tabu@spreadtarget \relax + \edef\tabu@bufferX{\endgroup \tabucolX \the\tabucolX \tabu@target\the\tabu@target}% + \else + \tabu@message{\tabu@message@spreadarith}% + \ifdim \dimexpr \@tempdimc+\tabu@spreadtarget >\tabu@target + \tabu@message{(tabu) spread + \ifdim \@tempdimc>\tabu@target useless here: default target used% + \else too large: reduced to fit default target\fi.}% + \else + \tabu@target =\dimexpr \@tempdimc+\tabu@spreadtarget \relax + \tabu@message{(tabu) spread: New target set to \the\tabu@target^^J}% + \fi + \begingroup \let\tabu@wddef \@gobbletwo + \@tempdimb \@tempdima + \tabucolX@init + \tabu@arithnegcoef + \wd\tabu@box =\dimexpr \wd\tabu@box +\@tempdima-\@tempdimb \relax + \expandafter\endgroup \expandafter\tabucolX \the\tabucolX + \tabu@arith + \fi +}% \tabu@spreadarith +\def\tabu@spread@arith #1#2{% + \ifdim #2\p@>\z@ \advance\dimen@ #2\p@ + \else \advance\@tempdima \tabu@wd{#1}\relax + \fi +}% \tabu@spread@arith +%% Reporting in the .log file --------------------------------------- +\def\tabu@message@defaulttarget{% + \ifnum\tabu@nested=\z@^^J(tabu) Default target: + \ifx\tabudefaulttarget\linewidth \string\linewidth + \ifdim \tabu@thetarget=\linewidth \else + -\the\dimexpr\linewidth-\tabu@thetarget\fi = + \else\ifx\tabudefaulttarget\linegoal\string\linegoal= + \fi\fi + \else (tabu) Default target (nested): \fi + \the\tabu@target \on@line + \ifnum\tabu@nested=\z@ , page \the\c@page\fi} +\def\tabu@message@target {^^J(tabu) Target specified: + \the\tabu@target \on@line, page \the\c@page} +\def\tabu@message@arith {\tabu@header + \tabu@msgalign \tabucolX { }{ }{ }{ }{ }\@@ + \tabu@msgalign \wd\tabu@box { }{ }{ }{ }{ }\@@ + \tabu@msgalign \tabu@target { }{ }{ }{ }{ }\@@ + \tabu@msgalign@PT \dimen@ { }{}{}{}{}{}{}\@@ + \ifdim \tabu@DELTA<\tabu@hfuzz giving space\else + \tabu@msgalign \dimexpr (\@tempdima-\tabu@DELTA) *\p@/\tabu@Xsum -\tabucolX {}{}{}{}{}\@@ + \fi +}% \tabu@message@arith +\def\tabu@message@spreadarith {\tabu@spreadheader + \tabu@msgalign \tabu@spreadtarget { }{ }{ }{ }{}\@@ + \tabu@msgalign \wd\tabu@box { }{ }{ }{ }{}\@@ + \tabu@msgalign -\tabu@naturalXmax { }{}{}{}{}\@@ + \tabu@msgalign \tabu@naturalXmin { }{ }{ }{ }{}\@@ + \tabu@msgalign \ifdim \dimexpr\@tempdimc>\tabu@target \tabu@target + \else \@tempdimc+\tabu@spreadtarget \fi + {}{}{}{}{}\@@} +\def\tabu@message@negcoef #1#2{ + \tabu@spaces\tabu@spaces\space * #1. X[\rem@pt#2]: + \space width = \tabu@wd {#1} + \expandafter\string\csname tabu@\the\tabu@nested.W\number#1\endcsname + \ifdim -\tabu@pt#2\tabucolX<\tabu@target + < \number-\rem@pt#2 X + = \the\dimexpr -\tabu@pt#2\tabucolX \relax + \else + <= \the\tabu@target\space < \number-\rem@pt#2 X\fi} +\def\tabu@message@reached{\tabu@header + ******* Reached Target: + hfuzz = \tabu@hfuzz\on@line\space *******} +\def\tabu@message@etime{\edef\tabu@stoptime{\the\pdfelapsedtime}% + \tabu@message{(tabu)\tabu@spaces Time elapsed during measure: + \the\numexpr(\tabu@stoptime-\tabu@starttime-32767)/65536\relax sec + \the\numexpr\numexpr(\tabu@stoptime-\tabu@starttime) + -\numexpr(\tabu@stoptime-\tabu@starttime-32767)/65536\relax*65536\relax + *1000/65536\relax ms \tabu@spaces(\the\tabu@cnt\space + cycle\ifnum\tabu@cnt>\@ne s\fi)^^J^^J}} +\def\tabu@message@verticalsp {% + \ifdim \@tempdima>\tabu@ht + \ifdim \@tempdimb>\tabu@dp + \expandafter\expandafter\expandafter\string\tabu@ht = + \tabu@msgalign \@tempdima { }{ }{ }{ }{ }\@@ + \expandafter\expandafter\expandafter\string\tabu@dp = + \tabu@msgalign \@tempdimb { }{ }{ }{ }{ }\@@^^J% + \else + \expandafter\expandafter\expandafter\string\tabu@ht = + \tabu@msgalign \@tempdima { }{ }{ }{ }{ }\@@^^J% + \fi + \else\ifdim \@tempdimb>\tabu@dp + \tabu@spaces\tabu@spaces\tabu@spaces + \expandafter\expandafter\expandafter\string\tabu@dp = + \tabu@msgalign \@tempdimb { }{ }{ }{ }{ }\@@^^J\fi + \fi +}% \tabu@message@verticalsp +\edef\tabu@spaces{\@spaces} +\def\tabu@strippt{\expandafter\tabu@pt\the} +{\@makeother\P \@makeother\T\lowercase{\gdef\tabu@pt #1PT{#1}}} +\def\tabu@msgalign{\expandafter\tabu@msg@align\the\dimexpr} +\def\tabu@msgalign@PT{\expandafter\tabu@msg@align\romannumeral-`\0\tabu@strippt} +\def\do #1{% + \def\tabu@msg@align##1.##2##3##4##5##6##7##8##9\@@{% + \ifnum##1<10 #1 #1\else + \ifnum##1<100 #1 \else + \ifnum##1<\@m #1\fi\fi\fi + ##1.##2##3##4##5##6##7##8#1}% + \def\tabu@header{(tabu) \ifnum\tabu@cnt<10 #1\fi\the\tabu@cnt) }% + \def\tabu@titles{\ifnum \tabu@nested=\z@ + (tabu) Try#1 #1 tabu X #1 #1 #1tabu Width #1 #1 Target + #1 #1 #1 Coefs #1 #1 #1 Update^^J\fi}% + \def\tabu@spreadheader{% + (tabu) Try#1 #1 Spread #1 #1 tabu Width #1 #1 #1 Nat. X #1 #1 #1 #1Nat. Min. + #1 New Target^^J% + (tabu) sprd} + \def\tabu@message@save {\begingroup + \def\x ####1{\tabu@msg@align ####1{ }{ }{ }{ }{}\@@} + \def\z ####1{\expandafter\x\expandafter{\romannumeral-`\0\tabu@strippt + \dimexpr####1\p@{ }{ }}}% + \let\color \relax \def\tabu@rulesstyle ####1####2{\detokenize{####1}}% + \let\CT@arc@ \relax \let\@preamble \@gobble + \let\tabu@savedpream \@firstofone + \let\tabu@savedparams \@firstofone + \def\tabu@target ####1\relax {(tabu) target #1 #1 #1 #1 #1 = \x{####1}^^J}% + \def\tabucolX ####1\relax {(tabu) X columns width#1 = \x{####1}^^J}% + \def\tabu@nbcols ####1\relax {(tabu) Number of columns: \z{####1}^^J}% + \def\tabu@aligndefault ####1{(tabu) Default alignment: #1 #1 ####1^^J}% + \def\col@sep ####1\relax {(tabu) column sep #1 #1 #1 = \x{####1}^^J}% + \def\arrayrulewidth ####1\relax{(tabu) arrayrulewidth #1 = \x{####1}}% + \def\doublerulesep ####1\relax { doublerulesep = \x{####1}^^J}% + \def\extratabsurround####1\relax{(tabu) extratabsurround = \x{####1}^^J}% + \def\extrarowheight ####1\relax{(tabu) extrarowheight #1 = \x{####1}}% + \def\extrarowdepth ####1\relax {extrarowdepth = \x{####1}^^J}% + \def\abovetabulinesep####1\relax{(tabu) abovetabulinesep=\x{####1} }% + \def\belowtabulinesep####1\relax{ belowtabulinesep=\x{####1}^^J}% + \def\arraystretch ####1{(tabu) arraystretch #1 #1 = \z{####1}^^J}% + \def\minrowclearance####1\relax{(tabu) minrowclearance #1 = \x{####1}^^J}% + \def\tabu@arc@L ####1{(tabu) taburulecolor #1 #1 = ####1^^J}% + \def\tabu@drsc@L ####1{(tabu) tabudoublerulecolor= ####1^^J}% + \def\tabu@evr@L ####1{(tabu) everyrow #1 #1 #1 #1 = \detokenize{####1}^^J}% + \def\tabu@ls@L ####1{(tabu) line style = \detokenize{####1}^^J}% + \def\NC@find ####1\@nil{(tabu) tabu preamble#1 #1 = \detokenize{####1}^^J}% + \def\tabu@wddef####1####2{(tabu) Natural width ####1 = \x{####2}^^J}% + \let\edef \@gobbletwo \let\def \@empty \let\let \@gobbletwo + \tabu@message{% + (tabu) \string\savetabu{\tabu@temp}: \on@line^^J% + \tabu@usetabu \@nil^^J}% + \endgroup} +}\do{ } +%% Measuring the natural width (varwidth) - store the results ------- +\def\tabu@startpboxmeasure #1{\bgroup % entering \vtop + \edef\tabu@temp{\expandafter\@secondoftwo \ifx\tabu@hsize #1\else\relax\fi}% + \ifodd 1\ifx \tabu@temp\@empty 0 \else % starts with \tabu@hsize ? + \iftabu@spread \else % if spread -> measure + \ifdim \tabu@temp\p@>\z@ 0 \fi\fi\fi% if coef>0 -> do not measure + \let\@startpbox \tabu@startpboxORI % restore immediately (nesting) + \tabu@measuringtrue % for the quick option... + \tabu@Xcol =\expandafter\@firstoftwo\ifx\tabu@hsize #1\fi + \ifdim \tabu@temp\p@>\z@ \ifdim \tabu@temp\tabucolX<\tabu@target + \tabu@target=\tabu@temp\tabucolX \fi\fi + \setbox\tabu@box \hbox \bgroup + \begin{varwidth}\tabu@target + \let\FV@ListProcessLine \tabu@FV@ListProcessLine % \hbox to natural width... + \narrowragged \arraybackslash \parfillskip \@flushglue + \ifdefined\pdfadjustspacing \pdfadjustspacing\z@ \fi + \bgroup \aftergroup\tabu@endpboxmeasure + \ifdefined \cellspacetoplimit \tabu@cellspacepatch \fi + \else \expandafter\@gobble + \tabu@startpboxquick{#1}% \@gobble \bgroup + \fi +}% \tabu@startpboxmeasure +\def\tabu@cellspacepatch{\def\bcolumn##1\@nil{}\let\ecolumn\@empty + \bgroup\color@begingroup} +\def\tabu@endpboxmeasure {% + \@finalstrut \@arstrutbox + \end{varwidth}\egroup % + \ifdim \tabu@temp\p@ <\z@ % neg coef + \ifdim \tabu@wd\tabu@Xcol <\wd\tabu@box + \tabu@wddef\tabu@Xcol {\the\wd\tabu@box}% + \tabu@debug{\tabu@message@endpboxmeasure}% + \fi + \else % spread coef>0 + \global\advance \tabu@naturalX \wd\tabu@box + \@tempdima =\dimexpr \wd\tabu@box *\p@/\dimexpr \tabu@temp\p@\relax \relax + \ifdim \tabu@naturalXmax <\tabu@naturalX + \xdef\tabu@naturalXmax {\the\tabu@naturalX}\fi + \ifdim \tabu@naturalXmin <\@tempdima + \xdef\tabu@naturalXmin {\the\@tempdima}\fi + \fi + \box\tabu@box \egroup % end of \vtop (measure) restore \tabu@target +}% \tabu@endpboxmeasure +\def\tabu@wddef #1{\expandafter\xdef + \csname tabu@\the\tabu@nested.W\number#1\endcsname} +\def\tabu@wd #1{\csname tabu@\the\tabu@nested.W\number#1\endcsname} +\def\tabu@message@endpboxmeasure{\tabu@spaces\tabu@spaces<-> % <-> save natural wd + \the\tabu@Xcol. X[\tabu@temp]: + target = \the\tabucolX \space + \expandafter\expandafter\expandafter\string\tabu@wd\tabu@Xcol + =\tabu@wd\tabu@Xcol +}% \tabu@message@endpboxmeasure +\def\tabu@startpboxquick {\bgroup + \let\@startpbox \tabu@startpboxORI % restore immediately + \let\tabu \tabu@quick % \begin is expanded before... + \expandafter\@gobble \@startpbox % gobbles \bgroup +}% \tabu@startpboxquick +\def\tabu@quick {\begingroup \iffalse{\fi \ifnum0=`}\fi + \toks@{}\def\tabu@stack{b}\tabu@collectbody \tabu@endquick +}% \tabu@quick +\def\tabu@endquick {% + \ifodd 1\ifx\tabu@end@envir\tabu@endtabu \else + \ifx\tabu@end@envir\tabu@endtabus \else 0\fi\fi\relax + \endgroup + \else \let\endtabu \relax + \tabu@end@envir + \fi +}% \tabu@quick +\def\tabu@endtabu {\end{tabu}} +\def\tabu@endtabus {\end{tabu*}} +%% Measuring the heights and depths - store the results ------------- +\def\tabu@verticalmeasure{\everypar{}% + \ifnum \currentgrouptype>12 % 14=semi-simple, 15=math shift group + \setbox\tabu@box =\hbox\bgroup + \let\tabu@verticalspacing \tabu@verticalsp@lcr + \d@llarbegin % after \hbox ... + \else + \edef\tabu@temp{\ifnum\currentgrouptype=5\vtop + \else\ifnum\currentgrouptype=12\vcenter + \else\vbox\fi\fi}% + \setbox\tabu@box \hbox\bgroup$\tabu@temp \bgroup + \let\tabu@verticalspacing \tabu@verticalsp@pmb + \fi +}% \tabu@verticalmeasure +\def\tabu@verticalsp@lcr{% + \d@llarend \egroup % + \@tempdima \dimexpr \ht\tabu@box+\abovetabulinesep + \@tempdimb \dimexpr \dp\tabu@box+\belowtabulinesep \relax + \ifdim\tabustrutrule>\z@ \tabu@debug{\tabu@message@verticalsp}\fi + \ifdim \tabu@ht<\@tempdima \tabu@htdef{\the\@tempdima}\fi + \ifdim \tabu@dp<\@tempdimb \tabu@dpdef{\the\@tempdimb}\fi + \noindent\vrule height\@tempdima depth\@tempdimb +}% \tabu@verticalsp@lcr +\def\tabu@verticalsp@pmb{% inserts struts as needed + \par \expandafter\egroup + \expandafter$\expandafter + \egroup \expandafter + \@tempdimc \the\prevdepth + \@tempdima \dimexpr \ht\tabu@box+\abovetabulinesep + \@tempdimb \dimexpr \dp\tabu@box+\belowtabulinesep \relax + \ifdim\tabustrutrule>\z@ \tabu@debug{\tabu@message@verticalsp}\fi + \ifdim \tabu@ht<\@tempdima \tabu@htdef{\the\@tempdima}\fi + \ifdim \tabu@dp<\@tempdimb \tabu@dpdef{\the\@tempdimb}\fi + \let\@finalstrut \@gobble + \hrule height\@tempdima depth\@tempdimb width\hsize +%% \box\tabu@box +}% \tabu@verticalsp@pmb + +\def\tabu@verticalinit{% + \ifnum \c@taburow=\z@ \tabu@rearstrut \fi % after \tabu@reset ! + \advance\c@taburow \@ne + \tabu@htdef{\the\ht\@arstrutbox}\tabu@dpdef{\the\dp\@arstrutbox}% + \advance\c@taburow \m@ne +}% \tabu@verticalinit +\def\tabu@htdef {\expandafter\xdef \csname tabu@\the\tabu@nested.H\the\c@taburow\endcsname} +\def\tabu@ht {\csname tabu@\the\tabu@nested.H\the\c@taburow\endcsname} +\def\tabu@dpdef {\expandafter\xdef \csname tabu@\the\tabu@nested.D\the\c@taburow\endcsname} +\def\tabu@dp {\csname tabu@\the\tabu@nested.D\the\c@taburow\endcsname} +\def\tabu@verticaldynamicadjustment {% + \advance\c@taburow \@ne + \extrarowheight \dimexpr\tabu@ht - \ht\strutbox + \extrarowdepth \dimexpr\tabu@dp - \dp\strutbox + \let\arraystretch \@empty + \advance\c@taburow \m@ne +}% \tabu@verticaldynamicadjustment +\def\tabuphantomline{\crcr \noalign{% + {\globaldefs \@ne + \setbox\@arstrutbox \box\voidb@x + \let\tabu@@celllalign \tabu@celllalign + \let\tabu@@cellralign \tabu@cellralign + \let\tabu@@cellleft \tabu@cellleft + \let\tabu@@cellright \tabu@cellright + \let\tabu@@thevline \tabu@thevline + \let\tabu@celllalign \@empty + \let\tabu@cellralign \@empty + \let\tabu@cellright \@empty + \let\tabu@cellleft \@empty + \let\tabu@thevline \relax}% + \edef\tabu@temp{\tabu@multispan \tabu@nbcols{\noindent &}}% + \toks@\expandafter{\tabu@temp \noindent\tabu@everyrowfalse \cr + \noalign{\tabu@rearstrut + {\globaldefs\@ne + \let\tabu@celllalign \tabu@@celllalign + \let\tabu@cellralign \tabu@@cellralign + \let\tabu@cellleft \tabu@@cellleft + \let\tabu@cellright \tabu@@cellright + \let\tabu@thevline \tabu@@thevline}}}% + \expandafter}\the\toks@ +}% \tabuphantomline +%% \firsthline and \lasthline corrections --------------------------- +\def\tabu@firstline {\tabu@hlineAZ \tabu@firsthlinecorrection {}} +\def\tabu@firsthline{\tabu@hlineAZ \tabu@firsthlinecorrection \hline} +\def\tabu@lastline {\tabu@hlineAZ \tabu@lasthlinecorrection {}} +\def\tabu@lasthline {\tabu@hlineAZ \tabu@lasthlinecorrection \hline} +\def\tabu@hline {% replaces \hline if no colortbl (see \AtBeginDocument) + \noalign{\ifnum0=`}\fi + {\CT@arc@\hrule height\arrayrulewidth}% + \futurelet \tabu@temp \tabu@xhline +}% \tabu@hline +\def\tabu@xhline{% + \ifx \tabu@temp \hline + {\ifx \CT@drsc@\relax \vskip + \else\ifx \CT@drsc@\@empty \vskip + \else \CT@drsc@\hrule height + \fi\fi + \doublerulesep}% + \fi + \ifnum0=`{\fi}% +}% \tabu@xhline +\def\tabu@hlineAZ #1#2{\noalign{\ifnum0=`}\fi \dimen@ \z@ \count@ \z@ + \toks@{}\def\tabu@hlinecorrection{#1}\def\tabu@temp{#2}% + \tabu@hlineAZsurround +}% \tabu@hlineAZ +\newcommand*\tabu@hlineAZsurround[1][\extratabsurround]{% + \extratabsurround #1\let\tabucline \tabucline@scan + \let\hline \tabu@hlinescan \let\firsthline \hline + \let\cline \tabu@clinescan \let\lasthline \hline + \expandafter \futurelet \expandafter \tabu@temp + \expandafter \tabu@nexthlineAZ \tabu@temp +}% \tabu@hlineAZsurround +\def\tabu@hlinescan {\tabu@thick \arrayrulewidth \tabu@xhlineAZ \hline} +\def\tabu@clinescan #1{\tabu@thick \arrayrulewidth \tabu@xhlineAZ {\cline{#1}}} +\def\tabucline@scan{\@testopt \tabucline@sc@n {}} +\def\tabucline@sc@n #1[#2]{\tabu@xhlineAZ {\tabucline[{#1}]{#2}}} +\def\tabu@nexthlineAZ{% + \ifx \tabu@temp\hline \else + \ifx \tabu@temp\cline \else + \ifx \tabu@temp\tabucline \else + \tabu@hlinecorrection + \fi\fi\fi +}% \tabu@nexthlineAZ +\def\tabu@xhlineAZ #1{% + \toks@\expandafter{\the\toks@ #1}% + \@tempdimc \tabu@thick % The last line width + \ifcase\count@ \@tempdimb \tabu@thick % The first line width + \else \advance\dimen@ \dimexpr \tabu@thick+\doublerulesep \relax + \fi + \advance\count@ \@ne \futurelet \tabu@temp \tabu@nexthlineAZ +}% \tabu@xhlineAZ +\def\tabu@firsthlinecorrection{% \count@ = number of \hline -1 + \@tempdima \dimexpr \ht\@arstrutbox+\dimen@ + \edef\firsthline{% + \omit \hbox to\z@{\hss{\noexpand\tabu@DBG{yellow}\vrule + height \the\dimexpr\@tempdima+\extratabsurround + depth \dp\@arstrutbox + width \tabustrutrule}\hss}\cr + \noalign{\vskip -\the\dimexpr \@tempdima+\@tempdimb + +\dp\@arstrutbox \relax}% + \the\toks@ + }\ifnum0=`{\fi + \expandafter}\firsthline % we are then ! +}% \tabu@firsthlinecorrection +\def\tabu@lasthlinecorrection{% + \@tempdima \dimexpr \dp\@arstrutbox+\dimen@+\@tempdimb+\@tempdimc + \edef\lasthline{% + \the\toks@ + \noalign{\vskip -\the\dimexpr\dimen@+\@tempdimb+\dp\@arstrutbox}% + \omit \hbox to\z@{\hss{\noexpand\tabu@DBG{yellow}\vrule + depth \the\dimexpr \dp\@arstrutbox+\@tempdimb+\dimen@ + +\extratabsurround-\@tempdimc + height \z@ + width \tabustrutrule}\hss}\cr + }\ifnum0=`{\fi + \expandafter}\lasthline % we are then ! +}% \tabu@lasthlinecorrection +\def\tabu@LT@@hline{% + \ifx\LT@next\hline + \global\let\LT@next \@gobble + \ifx \CT@drsc@\relax + \gdef\CT@LT@sep{% + \noalign{\penalty-\@medpenalty\vskip\doublerulesep}}% + \else + \gdef\CT@LT@sep{% + \multispan\LT@cols{% + \CT@drsc@\leaders\hrule\@height\doublerulesep\hfill}\cr}% + \fi + \else + \global\let\LT@next\empty + \gdef\CT@LT@sep{% + \noalign{\penalty-\@lowpenalty\vskip-\arrayrulewidth}}% + \fi + \ifnum0=`{\fi}% + \multispan\LT@cols + {\CT@arc@\leaders\hrule\@height\arrayrulewidth\hfill}\cr + \CT@LT@sep + \multispan\LT@cols + {\CT@arc@\leaders\hrule\@height\arrayrulewidth\hfill}\cr + \noalign{\penalty\@M}% + \LT@next +}% \tabu@LT@@hline +%% Horizontal lines : \tabucline ------------------------------------ +\let\tabu@start \@tempcnta +\let\tabu@stop \@tempcntb +\newcommand*\tabucline{\noalign{\ifnum0=`}\fi \tabu@cline} +\newcommand*\tabu@cline[2][]{\tabu@startstop{#2}% + \ifnum \tabu@stop<\z@ \toks@{}% + \else \tabu@clinearg{#1}\tabu@thestyle + \edef\tabucline{\toks@{% + \ifnum \tabu@start>\z@ \omit + \tabu@multispan\tabu@start {\span\omit}&\fi + \omit \tabu@multispan\tabu@stop {\span\omit}% + \tabu@thehline\cr + }}\tabucline + \tabu@tracinglines{(tabu:tabucline) Style: #1^^J\the\toks@^^J^^J}% + \fi + \futurelet \tabu@temp \tabu@xcline +}% \tabu@cline +\def\tabu@clinearg #1{% + \ifx\\#1\\\let\tabu@thestyle \tabu@ls@ + \else \@defaultunits \expandafter\let\expandafter\@tempa + \romannumeral-`\0#1\relax \@nnil + \ifx \hbox\@tempa \tabu@clinebox{#1}% + \else\ifx \box\@tempa \tabu@clinebox{#1}% + \else\ifx \vbox\@tempa \tabu@clinebox{#1}% + \else\ifx \vtop\@tempa \tabu@clinebox{#1}% + \else\ifx \copy\@tempa \tabu@clinebox{#1}% + \else\ifx \leaders\@tempa \tabu@clineleads{#1}% + \else\ifx \cleaders\@tempa \tabu@clineleads{#1}% + \else\ifx \xleaders\@tempa \tabu@clineleads{#1}% + \else\tabu@getline {#1}% + \fi\fi\fi\fi\fi\fi\fi\fi + \fi +}% \tabu@clinearg +\def\tabu@clinebox #1{\tabu@clineleads{\xleaders#1\hss}} +\def\tabu@clineleads #1{% + \let\tabu@thestyle \relax \let\tabu@leaders \@undefined + \gdef\tabu@thehrule{#1}} +\def\tabu@thehline{\begingroup + \ifdefined\tabu@leaders + \noexpand\tabu@thehleaders + \else \noexpand\tabu@thehrule + \fi \endgroup +}% \tabu@thehline +\def\tabu@xcline{% + \ifx \tabu@temp\tabucline + \toks@\expandafter{\the\toks@ \noalign + {\ifx\CT@drsc@\relax \vskip + \else \CT@drsc@\hrule height + \fi + \doublerulesep}}% + \fi + \tabu@docline +}% \tabu@xcline +\def\tabu@docline {\ifnum0=`{\fi \expandafter}\the\toks@} +\def\tabu@docline@evr {\xdef\tabu@doclineafter{\the\toks@}% + \ifnum0=`{\fi}\aftergroup\tabu@doclineafter} +\def\tabu@multispan #1#2{% + \ifnum\numexpr#1>\@ne #2\expandafter\tabu@multispan + \else \expandafter\@gobbletwo + \fi {#1-1}{#2}% +}% \tabu@multispan +\def\tabu@startstop #1{\tabu@start@stop #1\relax 1-\tabu@nbcols \@nnil} +\def\tabu@start@stop #1-#2\@nnil{% + \@defaultunits \tabu@start\number 0#1\relax \@nnil + \@defaultunits \tabu@stop \number 0#2\relax \@nnil + \tabu@stop \ifnum \tabu@start>\tabu@nbcols \m@ne + \else\ifnum \tabu@stop=\z@ \tabu@nbcols + \else\ifnum \tabu@stop>\tabu@nbcols \tabu@nbcols + \else \tabu@stop + \fi\fi\fi + \advance\tabu@start \m@ne + \ifnum \tabu@start>\z@ \advance\tabu@stop -\tabu@start \fi +}% \tabu@start@stop +%% Numbers: siunitx S columns (and \tabudecimal) ------------------- +\def\tabu@tabudecimal #1{% + \def\tabu@decimal{#1}\@temptokena{}% + \let\tabu@getdecimal@ \tabu@getdecimal@ignorespaces + \tabu@scandecimal +}% \tabu@tabudecimal +\def\tabu@scandecimal{\futurelet \tabu@temp \tabu@getdecimal@} +\def\tabu@skipdecimal#1{#1\tabu@scandecimal} +\def\tabu@getdecimal@ignorespaces{% + \ifcase 0\ifx\tabu@temp\ignorespaces\else + \ifx\tabu@temp\@sptoken1\else + 2\fi\fi\relax + \let\tabu@getdecimal@ \tabu@getdecimal + \expandafter\tabu@skipdecimal + \or \expandafter\tabu@gobblespace\expandafter\tabu@scandecimal + \else \expandafter\tabu@skipdecimal + \fi +}% \tabu@getdecimal@ignorespaces +\def\tabu@get@decimal#1{\@temptokena\expandafter{\the\@temptokena #1}% + \tabu@scandecimal} +\def\do#1{% + \def\tabu@get@decimalspace#1{% + \@temptokena\expandafter{\the\@temptokena #1}\tabu@scandecimal}% +}\do{ } +\let\tabu@@tabudecimal \tabu@tabudecimal +\def\tabu@getdecimal{% + \ifcase 0\ifx 0\tabu@temp\else + \ifx 1\tabu@temp\else + \ifx 2\tabu@temp\else + \ifx 3\tabu@temp\else + \ifx 4\tabu@temp\else + \ifx 5\tabu@temp\else + \ifx 6\tabu@temp\else + \ifx 7\tabu@temp\else + \ifx 8\tabu@temp\else + \ifx 9\tabu@temp\else + \ifx .\tabu@temp\else + \ifx ,\tabu@temp\else + \ifx -\tabu@temp\else + \ifx +\tabu@temp\else + \ifx e\tabu@temp\else + \ifx E\tabu@temp\else + \ifx\tabu@cellleft\tabu@temp1\else + \ifx\ignorespaces\tabu@temp1\else + \ifx\@sptoken\tabu@temp2\else + 3\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\relax + \expandafter\tabu@get@decimal + \or \expandafter\tabu@skipdecimal + \or \expandafter\tabu@get@decimalspace + \else\expandafter\tabu@printdecimal + \fi +}% \tabu@getdecimal +\def\tabu@printdecimal{% + \edef\tabu@temp{\the\@temptokena}% + \ifx\tabu@temp\@empty\else + \ifx\tabu@temp\space\else + \expandafter\tabu@decimal\expandafter{\the\@temptokena}% + \fi\fi +}% \tabu@printdecimal +%% Verbatim inside X columns ---------------------------------------- +\def\tabu@verbatim{% + \let\verb \tabu@verb + \let\FV@DefineCheckEnd \tabu@FV@DefineCheckEnd +}% \tabu@verbatim +\let\tabu@ltx@verb \verb +\def\tabu@verb{\@ifstar {\tabu@ltx@verb*} \tabu@ltx@verb} +\def\tabu@fancyvrb {% + \def\tabu@FV@DefineCheckEnd ##1{% + \def\tabu@FV@DefineCheckEnd{% + ##1% + \let\FV@CheckEnd \tabu@FV@CheckEnd + \let\FV@@CheckEnd \tabu@FV@@CheckEnd + \let\FV@@@CheckEnd \tabu@FV@@@CheckEnd + \edef\FV@EndScanning{% + \def\noexpand\next{\noexpand\end{\FV@EnvironName}}% + \global\let\noexpand\FV@EnvironName\relax + \noexpand\next}% + \xdef\FV@EnvironName{\detokenize\expandafter{\FV@EnvironName}}}% + }\expandafter\tabu@FV@DefineCheckEnd\expandafter{\FV@DefineCheckEnd} +}% \tabu@fancyvrb +\def\tabu@FV@CheckEnd #1{\expandafter\FV@@CheckEnd \detokenize{#1\end{}}\@nil} +\edef\tabu@FV@@@CheckEnd {\detokenize{\end{}}} +\begingroup +\catcode`\[1 \catcode`\]2 +\@makeother\{ \@makeother\} + \edef\x[\endgroup + \def\noexpand\tabu@FV@@CheckEnd ##1\detokenize[\end{]##2\detokenize[}]##3% + ]\x \@nil{\def\@tempa{#2}\def\@tempb{#3}} +\def\tabu@FV@ListProcessLine #1{% + \hbox {%to \hsize{% + \kern\leftmargin + \hbox {%to \linewidth{% + \FV@LeftListNumber + \FV@LeftListFrame + \FancyVerbFormatLine{#1}\hss +%% DG/SR modification begin - Jan. 28, 1998 (for numbers=right add-on) +%% \FV@RightListFrame}% + \FV@RightListFrame + \FV@RightListNumber}% +%% DG/SR modification end + \hss}} +%% \savetabu -------------------------------------------------------- +\newcommand*\savetabu[1]{\noalign{% + \tabu@sanitizearg{#1}\tabu@temp + \ifx \tabu@temp\@empty \tabu@savewarn{}{The tabu will not be saved}\else + \@ifundefined{tabu@saved@\tabu@temp}{}{\tabu@savewarn{#1}{Overwriting}}% + \ifdefined\tabu@restored \expandafter\let + \csname tabu@saved@\tabu@temp \endcsname \tabu@restored + \else {\tabu@save}% + \fi + \fi}% +}% \savetabu +\def\tabu@save {% + \toks0\expandafter{\tabu@saved@}% + \iftabu@negcoef + \let\tabu@wddef \relax \let\tabu@ \tabu@savewd \edef\tabu@savewd{\tabu@Xcoefs}% + \toks0\expandafter{\the\toks\expandafter0\tabu@savewd}\fi + \toks1\expandafter{\tabu@savedpream}% + \toks2\expandafter{\tabu@savedpreamble}% + \let\@preamble \relax + \let\tabu@savedpream \relax \let\tabu@savedparams \relax + \edef\tabu@preamble{% + \def\noexpand\tabu@aligndefault{\tabu@align}% + \def\tabu@savedparams {\noexpand\the\toks0}% + \def\tabu@savedpream {\noexpand\the\toks1}}% + \edef\tabu@usetabu{% + \def\@preamble {\noexpand\the\toks2}% + \tabu@target \the\tabu@target \relax + \tabucolX \the\tabucolX \relax + \tabu@nbcols \the\tabu@nbcols \relax + \def\noexpand\tabu@aligndefault{\tabu@align}% + \def\tabu@savedparams {\noexpand\the\toks0}% + \def\tabu@savedpream {\noexpand\the\toks1}}% + \let\tabu@aligndefault \relax \let\@sharp \relax + \edef\@tempa{\noexpand\tabu@s@ved + {\tabu@usetabu} + {\tabu@preamble} + {\the\toks1}}\@tempa + \tabu@message@save +}% \tabu@save +\long\def\tabu@s@ved #1#2#3{% + \def\tabu@usetabu{#1}% + \expandafter\gdef\csname tabu@saved@\tabu@temp\endcsname ##1{% + \ifodd ##1% \usetabu + \tabu@measuringfalse \tabu@spreadfalse % Just in case... + \gdef\tabu@usetabu {% + \ifdim \tabu@target>\z@ \tabu@warn@usetabu \fi + \global\let\tabu@usetabu \@undefined + \def\@halignto {to\tabu@target}% + #1% + \ifx \tabu@align\tabu@aligndefault@text + \ifnum \tabu@nested=\z@ + \let\tabu@align \tabu@aligndefault \fi\fi}% + \else % \preamble + \gdef\tabu@preamble {% + \global\let\tabu@preamble \@undefined + #2% + \ifx \tabu@align\tabu@aligndefault@text + \ifnum \tabu@nested=\z@ + \let\tabu@align \tabu@aligndefault \fi\fi}% + \fi + #3}% +}% \tabu@s@ved +\def\tabu@aligndefault@text {\tabu@aligndefault}% +\def\tabu@warn@usetabu {\PackageWarning{tabu} + {Specifying a target with \string\usetabu\space is useless + \MessageBreak The target cannot be changed!}} +\def\tabu@savewd #1#2{\ifdim #2\p@<\z@ \tabu@wddef{#1}{\tabu@wd{#1}}\fi} +\def\tabu@savewarn#1#2{\PackageInfo{tabu} + {User-name `#1' already used for \string\savetabu + \MessageBreak #2}}% +\def\tabu@saveerr#1{\PackageError{tabu} + {User-name `#1' is unknown for \string\usetabu + \MessageBreak I cannot restore an unknown preamble!}\@ehd} +%% \rowfont --------------------------------------------------------- +\newskip \tabu@cellskip +\def\tabu@rowfont{\ifdim \baselineskip=\z@\noalign\fi + {\ifnum0=`}\fi \tabu@row@font} +\newcommand*\tabu@row@font[2][]{% + \ifnum7=\currentgrouptype + \global\let\tabu@@cellleft \tabu@cellleft + \global\let\tabu@@cellright \tabu@cellright + \global\let\tabu@@celllalign \tabu@celllalign + \global\let\tabu@@cellralign \tabu@cellralign + \global\let\tabu@@rowfontreset\tabu@rowfontreset + \fi + \global\let\tabu@rowfontreset \tabu@rowfont@reset + \expandafter\gdef\expandafter\tabu@cellleft\expandafter{\tabu@cellleft #2}% + \ifcsname tabu@cell@#1\endcsname % row alignment + \csname tabu@cell@#1\endcsname \fi + \ifnum0=`{\fi}% end of group / noalign group +}% \rowfont +\def\tabu@ifcolorleavevmode #1{\let\color \tabu@leavevmodecolor #1\let\color\tabu@color}% +\def\tabu@rowfont@reset{% + \global\let\tabu@rowfontreset \tabu@@rowfontreset + \global\let\tabu@cellleft \tabu@@cellleft + \global\let\tabu@cellright \tabu@@cellright + \global\let\tabu@cellfont \@empty + \global\let\tabu@celllalign \tabu@@celllalign + \global\let\tabu@cellralign \tabu@@cellralign +}% \tabu@@rowfontreset +\let\tabu@rowfontreset \@empty % overwritten \AtBeginDocument if colortbl +%% \tabu@prepnext@tok ----------------------------------------------- +\newif \iftabu@cellright +\def\tabu@prepnext@tok{% + \ifnum \count@<\z@ % + \@tempcnta \@M % + \tabu@nbcols\z@ + \let\tabu@fornoopORI \@fornoop + \tabu@cellrightfalse + \else + \ifcase \numexpr \count@-\@tempcnta \relax % (case 0): prev. token is left + \advance \tabu@nbcols \@ne + \iftabu@cellright % before-previous token is right and is finished + \tabu@cellrightfalse % + \tabu@righttok + \fi + \tabu@lefttok + \or % (case 1) previous token is right + \tabu@cellrighttrue \let\@fornoop \tabu@lastnoop + \else % special column: do not change the token + \iftabu@cellright % before-previous token is right + \tabu@cellrightfalse + \tabu@righttok + \fi + \fi % \ifcase + \fi + \tabu@prepnext@tokORI +}% \tabu@prepnext@tok +\long\def\tabu@lastnoop#1\@@#2#3{\tabu@lastn@@p #2\@nextchar \in@\in@@} +\def\tabu@lastn@@p #1\@nextchar #2#3\in@@{% + \ifx \in@#2\else + \let\@fornoop \tabu@fornoopORI + \xdef\tabu@mkpreambuffer{\tabu@nbcols\the\tabu@nbcols \tabu@mkpreambuffer}% + \toks0\expandafter{\expandafter\tabu@everyrowtrue \the\toks0}% + \expandafter\prepnext@tok + \fi +}% \tabu@lastnoop +\def\tabu@righttok{% + \advance \count@ \m@ne + \toks\count@\expandafter {\the\toks\count@ \tabu@cellright \tabu@cellralign}% + \advance \count@ \@ne +}% \tabu@righttok +\def\tabu@lefttok{\toks\count@\expandafter{\expandafter\tabu@celllalign + \the\toks\count@ \tabu@cellleft}% after because of $ +}% \tabu@lefttok +%% Neutralisation of glues ------------------------------------------ +\let\tabu@cellleft \@empty +\let\tabu@cellright \@empty +\tabu@celllalign@def{\tabu@cellleft}% +\let\tabu@cellralign \@empty +\def\tabu@cell@align #1#2#3{% + \let\tabu@maybesiunitx \toks@ \tabu@celllalign + \global \expandafter \tabu@celllalign@def \expandafter {\the\toks@ #1}% + \toks@\expandafter{\tabu@cellralign #2}% + \xdef\tabu@cellralign{\the\toks@}% + \toks@\expandafter{\tabu@cellleft #3}% + \xdef\tabu@cellleft{\the\toks@}% +}% \tabu@cell@align +\def\tabu@cell@l{% force alignment to left + \tabu@cell@align + {\tabu@removehfil \raggedright \tabu@cellleft}% left + {\tabu@flush1\tabu@ignorehfil}% right + \raggedright +}% \tabu@cell@l +\def\tabu@cell@c{% force alignment to center + \tabu@cell@align + {\tabu@removehfil \centering \tabu@flush{.5}\tabu@cellleft} + {\tabu@flush{.5}\tabu@ignorehfil} + \centering +}% \tabu@cell@c +\def\tabu@cell@r{% force alignment to right + \tabu@cell@align + {\tabu@removehfil \raggedleft \tabu@flush1\tabu@cellleft} + \tabu@ignorehfil + \raggedleft +}% \tabu@cell@r +\def\tabu@cell@j{% force justification (for p, m, b columns) + \tabu@cell@align + {\tabu@justify\tabu@cellleft} + {} + \tabu@justify +}% \tabu@cell@j +\def\tabu@justify{% + \leftskip\z@skip \@rightskip\leftskip \rightskip\@rightskip + \parfillskip\@flushglue +}% \tabu@justify +%% ragged2e settings +\def\tabu@cell@L{% force alignment to left (ragged2e) + \tabu@cell@align + {\tabu@removehfil \RaggedRight \tabu@cellleft} + {\tabu@flush 1\tabu@ignorehfil} + \RaggedRight +}% \tabu@cell@L +\def\tabu@cell@C{% force alignment to center (ragged2e) + \tabu@cell@align + {\tabu@removehfil \Centering \tabu@flush{.5}\tabu@cellleft} + {\tabu@flush{.5}\tabu@ignorehfil} + \Centering +}% \tabu@cell@C +\def\tabu@cell@R{% force alignment to right (ragged2e) + \tabu@cell@align + {\tabu@removehfil \RaggedLeft \tabu@flush 1\tabu@cellleft} + \tabu@ignorehfil + \RaggedLeft +}% \tabu@cell@R +\def\tabu@cell@J{% force justification (ragged2e) + \tabu@cell@align + {\justifying \tabu@cellleft} + {} + \justifying +}% \tabu@cell@J +\def\tabu@flush#1{% + \iftabu@colortbl % colortbl uses \hfill rather than \hfil + \hskip \ifnum13<\currentgrouptype \stretch{#1}% + \else \ifdim#1pt<\p@ \tabu@cellskip + \else \stretch{#1} + \fi\fi \relax + \else % array.sty + \ifnum 13<\currentgrouptype + \hfil \hskip1sp \relax \fi + \fi +}% \tabu@flush +\let\tabu@hfil \hfil +\let\tabu@hfill \hfill +\let\tabu@hskip \hskip +\def\tabu@removehfil{% + \iftabu@colortbl + \unkern \tabu@cellskip =\lastskip + \ifnum\gluestretchorder\tabu@cellskip =\tw@ \hskip-\tabu@cellskip + \else \tabu@cellskip \z@skip + \fi + \else + \ifdim\lastskip=1sp\unskip\fi + \ifnum\gluestretchorder\lastskip =\@ne + \hfilneg % \hfilneg for array.sty but not for colortbl... + \fi + \fi +}% \tabu@removehfil +\def\tabu@ignorehfil{\aftergroup \tabu@nohfil} +\def\tabu@nohfil{% \hfil -> do nothing + restore original \hfil + \def\hfil{\let\hfil \tabu@hfil}% local to (alignment template) group +}% \tabu@nohfil +\def\tabu@colortblalignments {% if colortbl + \def\tabu@nohfil{% + \def\hfil {\let\hfil \tabu@hfil}% local to (alignment template) group + \def\hfill {\let\hfill \tabu@hfill}% (colortbl uses \hfill) pfff... + \def\hskip ####1\relax{\let\hskip \tabu@hskip}}% local +}% \tabu@colortblalignments +%% Taking care of footnotes and hyperfootnotes ---------------------- +\long\def\tabu@footnotetext #1{% + \edef\@tempa{\the\tabu@footnotes + \noexpand\footnotetext [\the\csname c@\@mpfn\endcsname]}% + \global\tabu@footnotes\expandafter{\@tempa {#1}}}% +\long\def\tabu@xfootnotetext [#1]#2{% + \global\tabu@footnotes\expandafter{\the\tabu@footnotes + \footnotetext [{#1}]{#2}}} +\let\tabu@xfootnote \@xfootnote +\long\def\tabu@Hy@ftntext{\tabu@Hy@ftntxt {\the \c@footnote }} +\long\def\tabu@Hy@xfootnote [#1]{% + \begingroup + \value\@mpfn #1\relax + \protected@xdef \@thefnmark {\thempfn}% + \endgroup + \@footnotemark \tabu@Hy@ftntxt {#1}% +}% \tabu@Hy@xfootnote +\long\def\tabu@Hy@ftntxt #1#2{% + \edef\@tempa{% + \the\tabu@footnotes + \begingroup + \value\@mpfn #1\relax + \noexpand\protected@xdef\noexpand\@thefnmark {\noexpand\thempfn}% + \expandafter \noexpand \expandafter + \tabu@Hy@footnotetext \expandafter{\Hy@footnote@currentHref}% + }% + \global\tabu@footnotes\expandafter{\@tempa {#2}% + \endgroup}% +}% \tabu@Hy@ftntxt +\long\def\tabu@Hy@footnotetext #1#2{% + \H@@footnotetext{% + \ifHy@nesting + \hyper@@anchor {#1}{#2}% + \else + \Hy@raisedlink{% + \hyper@@anchor {#1}{\relax}% + }% + \def\@currentHref {#1}% + \let\@currentlabelname \@empty + #2% + \fi + }% +}% \tabu@Hy@footnotetext +%% No need for \arraybackslash ! ------------------------------------ +\def\tabu@latextwoe {% +\def\tabu@temp##1##2##3{{\toks@\expandafter{##2##3}\xdef##1{\the\toks@}}} +\tabu@temp \tabu@centering \centering \arraybackslash +\tabu@temp \tabu@raggedleft \raggedleft \arraybackslash +\tabu@temp \tabu@raggedright \raggedright \arraybackslash +}% \tabu@latextwoe +\def\tabu@raggedtwoe {% +\def\tabu@temp ##1##2##3{{\toks@\expandafter{##2##3}\xdef##1{\the\toks@}}} +\tabu@temp \tabu@Centering \Centering \arraybackslash +\tabu@temp \tabu@RaggedLeft \RaggedLeft \arraybackslash +\tabu@temp \tabu@RaggedRight \RaggedRight \arraybackslash +\tabu@temp \tabu@justifying \justifying \arraybackslash +}% \tabu@raggedtwoe +\def\tabu@normalcrbackslash{\let\\\@normalcr} +\def\tabu@trivlist{\expandafter\def\expandafter\@trivlist\expandafter{% + \expandafter\tabu@normalcrbackslash \@trivlist}} +%% Utilities: \fbox \fcolorbox and \tabudecimal ------------------- +\def\tabu@fbox {\leavevmode\afterassignment\tabu@beginfbox \setbox\@tempboxa\hbox} +\def\tabu@beginfbox {\bgroup \kern\fboxsep + \bgroup\aftergroup\tabu@endfbox} +\def\tabu@endfbox {\kern\fboxsep\egroup\egroup + \@frameb@x\relax} +\def\tabu@color@b@x #1#2{\leavevmode \bgroup + \def\tabu@docolor@b@x{#1{#2\color@block{\wd\z@}{\ht\z@}{\dp\z@}\box\z@}}% + \afterassignment\tabu@begincolor@b@x \setbox\z@ \hbox +}% \tabu@color@b@x +\def\tabu@begincolor@b@x {\kern\fboxsep \bgroup + \aftergroup\tabu@endcolor@b@x \set@color} +\def\tabu@endcolor@b@x {\kern\fboxsep \egroup + \dimen@\ht\z@ \advance\dimen@ \fboxsep \ht\z@ \dimen@ + \dimen@\dp\z@ \advance\dimen@ \fboxsep \dp\z@ \dimen@ + \tabu@docolor@b@x \egroup +}% \tabu@endcolor@b@x +%% Corrections (arydshln, delarray, colortbl) ----------------------- +\def\tabu@fix@arrayright {%% \@arrayright is missing from \endarray + \iftabu@colortbl + \ifdefined\adl@array % + \def\tabu@endarray{% + \adl@endarray \egroup \adl@arrayrestore \CT@end \egroup % + \@arrayright % + \gdef\@preamble{}}% + \else % + \def\tabu@endarray{% + \crcr \egroup \egroup % + \@arrayright % + \gdef\@preamble{}\CT@end}% + \fi + \else + \ifdefined\adl@array % + \def\tabu@endarray{% + \adl@endarray \egroup \adl@arrayrestore \egroup % + \@arrayright % + \gdef\@preamble{}}% + \else % + \PackageWarning{tabu} + {\string\@arrayright\space is missing from the + \MessageBreak definition of \string\endarray. + \MessageBreak Compatibility with delarray.sty is broken.}% + \fi\fi +}% \tabu@fix@arrayright +\def\tabu@adl@xarraydashrule #1#2#3{% + \ifnum\@lastchclass=\adl@class@start\else + \ifnum\@lastchclass=\@ne\else + \ifnum\@lastchclass=5 \else % @-arg (class 5) and !-arg (class 1) + \adl@leftrulefalse \fi\fi % must be treated the same + \fi + \ifadl@zwvrule\else \ifadl@inactive\else + \@addtopreamble{\vrule\@width\arrayrulewidth + \@height\z@ \@depth\z@}\fi \fi + \ifadl@leftrule + \@addtopreamble{\adl@vlineL{\CT@arc@}{\adl@dashgapcolor}% + {\number#1}#3}% + \else \@addtopreamble{\adl@vlineR{\CT@arc@}{\adl@dashgapcolor}% + {\number#2}#3} + \fi +}% \tabu@adl@xarraydashrule +\def\tabu@adl@act@endpbox {% + \unskip \ifhmode \nobreak \fi \@finalstrut \@arstrutbox + \egroup \egroup + \adl@colhtdp \box\adl@box \hfil +}% \tabu@adl@act@endpbox +\def\tabu@adl@fix {% + \let\adl@xarraydashrule \tabu@adl@xarraydashrule % arydshln + \let\adl@act@endpbox \tabu@adl@act@endpbox % arydshln + \let\adl@act@@endpbox \tabu@adl@act@endpbox % arydshln + \let\@preamerror \@preamerr % arydshln +}% \tabu@adl@fix +%% Correction for longtable' \@startbox definition ------------------ +%% => \everypar is ``missing'' : TeX should be in vertical mode +\def\tabu@LT@startpbox #1{% + \bgroup + \let\@footnotetext\LT@p@ftntext + \setlength\hsize{#1}% + \@arrayparboxrestore + \everypar{% + \vrule \@height \ht\@arstrutbox \@width \z@ + \everypar{}}% +}% \tabu@LT@startpbox +%% \tracingtabu and the package options ------------------ +\DeclareOption{delarray}{\AtEndOfPackage{\RequirePackage{delarray}}} +\DeclareOption{linegoal}{% + \AtEndOfPackage{% + \RequirePackage{linegoal}[2010/12/07]% + \let\tabudefaulttarget \linegoal% \linegoal is \linewidth if not pdfTeX +}} +\DeclareOption{scantokens}{\tabuscantokenstrue} +\DeclareOption{debugshow}{\AtEndOfPackage{\tracingtabu=\tw@}} +\def\tracingtabu {\begingroup\@ifnextchar=% + {\afterassignment\tabu@tracing\count@} + {\afterassignment\tabu@tracing\count@1\relax}} +\def\tabu@tracing{\expandafter\endgroup + \expandafter\tabu@tr@cing \the\count@ \relax +}% \tabu@tracing +\def\tabu@tr@cing #1\relax {% + \ifnum#1>\thr@@ \let\tabu@tracinglines\message + \else \let\tabu@tracinglines\@gobble + \fi + \ifnum#1>\tw@ \let\tabu@DBG \tabu@@DBG + \def\tabu@mkarstrut {\tabu@DBG@arstrut}% + \tabustrutrule 1.5\p@ + \else \let\tabu@DBG \@gobble + \def\tabu@mkarstrut {\tabu@arstrut}% + \tabustrutrule \z@ + \fi + \ifnum#1>\@ne \let\tabu@debug \message + \else \let\tabu@debug \@gobble + \fi + \ifnum#1>\z@ + \let\tabu@message \message + \let\tabu@tracing@save \tabu@message@save + \let\tabu@starttimer \tabu@pdftimer + \else + \let\tabu@message \@gobble + \let\tabu@tracing@save \@gobble + \let\tabu@starttimer \relax + \fi +}% \tabu@tr@cing +%% Setup \AtBeginDocument +\AtBeginDocument{\tabu@AtBeginDocument} +\def\tabu@AtBeginDocument{\let\tabu@AtBeginDocument \@undefined + \ifdefined\arrayrulecolor \tabu@colortbltrue % + \tabu@colortblalignments % different glues are used + \else \tabu@colortblfalse \fi + \ifdefined\CT@arc@ \else \let\CT@arc@ \relax \fi + \ifdefined\CT@drsc@\else \let\CT@drsc@ \relax \fi + \let\tabu@arc@L \CT@arc@ \let\tabu@drsc@L \CT@drsc@ + \ifodd 1\ifcsname siunitx_table_collect_begin:Nn\endcsname % + \expandafter\ifx + \csname siunitx_table_collect_begin:Nn\endcsname\relax 0\fi\fi\relax + \tabu@siunitxtrue + \else \let\tabu@maybesiunitx \@firstofone % + \let\tabu@siunitx \tabu@nosiunitx + \tabu@siunitxfalse + \fi + \ifdefined\adl@array % + \else \let\tabu@adl@fix \relax + \let\tabu@adl@endtrial \@empty \fi + \ifdefined\longtable % + \else \let\longtabu \tabu@nolongtabu \fi + \ifdefined\cellspacetoplimit \tabu@warn@cellspace\fi + \csname\ifcsname ifHy@hyperfootnotes\endcsname % + ifHy@hyperfootnotes\else iffalse\fi\endcsname + \let\tabu@footnotetext \tabu@Hy@ftntext + \let\tabu@xfootnote \tabu@Hy@xfootnote \fi + \ifdefined\FV@DefineCheckEnd% + \tabu@fancyvrb \fi + \ifdefined\color % + \let\tabu@color \color + \def\tabu@leavevmodecolor ##1{% + \def\tabu@leavevmodecolor {\leavevmode ##1}% + }\expandafter\tabu@leavevmodecolor\expandafter{\color}% + \else + \let\tabu@color \tabu@nocolor + \let\tabu@leavevmodecolor \@firstofone \fi + \tabu@latextwoe + \ifdefined\@raggedtwoe@everyselectfont % + \tabu@raggedtwoe + \else + \let\tabu@cell@L \tabu@cell@l + \let\tabu@cell@R \tabu@cell@r + \let\tabu@cell@C \tabu@cell@c + \let\tabu@cell@J \tabu@cell@j \fi + \expandafter\in@ \expandafter\@arrayright \expandafter{\endarray}% + \ifin@ \let\tabu@endarray \endarray + \else \tabu@fix@arrayright \fi% + \everyrow{}% +}% \tabu@AtBeginDocument +\def\tabu@warn@cellspace{% + \PackageWarning{tabu}{% + Package cellspace has some limitations + \MessageBreak And redefines some macros of array.sty. + \MessageBreak Please use \string\tabulinesep\space to control + \MessageBreak vertical spacing of lines inside tabu environment}% +}% \tabu@warn@cellspace +%% tabu Package initialisation +\tabuscantokensfalse +\let\tabu@arc@G \relax +\let\tabu@drsc@G \relax +\let\tabu@evr@G \@empty +\let\tabu@rc@G \@empty +\def\tabu@ls@G {\tabu@linestyle@}% +\let\tabu@@rowfontreset \@empty % +\let\tabu@@celllalign \@empty +\let\tabu@@cellralign \@empty +\let\tabu@@cellleft \@empty +\let\tabu@@cellright \@empty +\def\tabu@naturalXmin {\z@} +\def\tabu@naturalXmax {\z@} +\let\tabu@rowfontreset \@empty +\def\tabulineon {4pt}\let\tabulineoff \tabulineon +\tabu@everyrowtrue +\ifdefined\pdfelapsedtime % + \def\tabu@pdftimer {\xdef\tabu@starttime{\the\pdfelapsedtime}}% +\else \let\tabu@pdftimer \relax \let\tabu@message@etime \relax +\fi +\tracingtabu=\z@ +\newtabulinestyle {=\maxdimen}% creates the 'factory' settings \tabu@linestyle@ +\tabulinestyle{} +\taburowcolors{} +\let\tabudefaulttarget \linewidth +\ProcessOptions* % \ProcessOptions* is quicker ! +\endinput +%% +%% End of file `tabu.sty'. diff --git a/latex/utils_8h_source.tex b/latex/utils_8h_source.tex new file mode 100644 index 00000000..6e197687 --- /dev/null +++ b/latex/utils_8h_source.tex @@ -0,0 +1,79 @@ +\doxysection{utils.\+h} +\hypertarget{utils_8h_source}{}\label{utils_8h_source}\index{src/cpp/utils.h@{src/cpp/utils.h}} + +\begin{DoxyCode}{0} +\DoxyCodeLine{00001\ \textcolor{preprocessor}{\#ifndef\ UTILS\_H}} +\DoxyCodeLine{00002\ \textcolor{preprocessor}{\#define\ UTILS\_H}} +\DoxyCodeLine{00003\ } +\DoxyCodeLine{00004\ \textcolor{preprocessor}{\#include\ }} +\DoxyCodeLine{00005\ \textcolor{preprocessor}{\#include\ }} +\DoxyCodeLine{00006\ \textcolor{preprocessor}{\#include\ }} +\DoxyCodeLine{00007\ \textcolor{preprocessor}{\#include\ }} +\DoxyCodeLine{00008\ \textcolor{preprocessor}{\#include\ }} +\DoxyCodeLine{00009\ \textcolor{preprocessor}{\#include\ }} +\DoxyCodeLine{00010\ \textcolor{preprocessor}{\#include\ }} +\DoxyCodeLine{00011\ \textcolor{preprocessor}{\#include\ }} +\DoxyCodeLine{00012\ \textcolor{preprocessor}{\#include\ }} +\DoxyCodeLine{00013\ \textcolor{preprocessor}{\#include\ }} +\DoxyCodeLine{00014\ \textcolor{preprocessor}{\#include\ }} +\DoxyCodeLine{00015\ \textcolor{preprocessor}{\#include\ }} +\DoxyCodeLine{00016\ \textcolor{preprocessor}{\#include\ }} +\DoxyCodeLine{00017\ \textcolor{preprocessor}{\#include\ }} +\DoxyCodeLine{00018\ \textcolor{preprocessor}{\#include\ }} +\DoxyCodeLine{00019\ \textcolor{preprocessor}{\#include\ }} +\DoxyCodeLine{00020\ \textcolor{preprocessor}{\#include\ }} +\DoxyCodeLine{00021\ \textcolor{preprocessor}{\#include\ }} +\DoxyCodeLine{00022\ \textcolor{preprocessor}{\#include\ }} +\DoxyCodeLine{00023\ } +\DoxyCodeLine{00024\ \textcolor{preprocessor}{\#include\ "{}json.hpp"{}}} +\DoxyCodeLine{00025\ } +\DoxyCodeLine{00026\ \textcolor{keyword}{using\ }json\ =\ nlohmann::json;} +\DoxyCodeLine{00027\ } +\DoxyCodeLine{00028\ \textcolor{keyword}{typedef}\ \textcolor{keywordtype}{unsigned}\ \textcolor{keywordtype}{long}\ \textcolor{keywordtype}{long}\ \textcolor{keywordtype}{int}\ hash\_t;} +\DoxyCodeLine{00029\ } +\DoxyCodeLine{00037\ std::vector\ read\_min\_hashes(\textcolor{keyword}{const}\ std::string\&\ sketch\_path);} +\DoxyCodeLine{00038\ } +\DoxyCodeLine{00039\ } +\DoxyCodeLine{00040\ } +\DoxyCodeLine{00041\ } +\DoxyCodeLine{00042\ } +\DoxyCodeLine{00043\ } +\DoxyCodeLine{00050\ \textcolor{keywordtype}{void}\ compute\_index\_from\_sketches(std::vector>\&\ sketches,\ std::unordered\_map>\&\ hash\_index);} +\DoxyCodeLine{00051\ } +\DoxyCodeLine{00052\ } +\DoxyCodeLine{00053\ } +\DoxyCodeLine{00054\ } +\DoxyCodeLine{00055\ } +\DoxyCodeLine{00056\ } +\DoxyCodeLine{00063\ \textcolor{keywordtype}{void}\ get\_sketch\_paths(\textcolor{keyword}{const}\ std::string\&\ filelist,\ std::vector\&\ sketch\_paths);} +\DoxyCodeLine{00064\ } +\DoxyCodeLine{00065\ } +\DoxyCodeLine{00066\ } +\DoxyCodeLine{00067\ } +\DoxyCodeLine{00068\ } +\DoxyCodeLine{00069\ } +\DoxyCodeLine{00078\ \textcolor{keywordtype}{void}\ read\_sketches(std::vector\&\ sketch\_paths,} +\DoxyCodeLine{00079\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ std::vector>\&\ sketches,\ } +\DoxyCodeLine{00080\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ std::vector\&\ empty\_sketch\_ids,\ } +\DoxyCodeLine{00081\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \textcolor{keyword}{const}\ uint\ num\_threads);} +\DoxyCodeLine{00082\ } +\DoxyCodeLine{00083\ } +\DoxyCodeLine{00084\ } +\DoxyCodeLine{00085\ } +\DoxyCodeLine{00086\ } +\DoxyCodeLine{00092\ \textcolor{keywordtype}{void}\ show\_empty\_sketches(\textcolor{keyword}{const}\ std::vector\&);} +\DoxyCodeLine{00093\ } +\DoxyCodeLine{00094\ } +\DoxyCodeLine{00095\ } +\DoxyCodeLine{00096\ } +\DoxyCodeLine{00109\ \textcolor{keywordtype}{void}\ compute\_intersection\_matrix(\textcolor{keyword}{const}\ std::vector>\&\ sketches\_query,} +\DoxyCodeLine{00110\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \textcolor{keyword}{const}\ std::vector>\&\ sketches\_ref,\ } +\DoxyCodeLine{00111\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \textcolor{keyword}{const}\ std::unordered\_map>\&\ hash\_index\_ref,} +\DoxyCodeLine{00112\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \textcolor{keyword}{const}\ std::string\&\ out\_dir,\ } +\DoxyCodeLine{00113\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ std::vector>\&\ similars,} +\DoxyCodeLine{00114\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \textcolor{keywordtype}{double}\ containment\_threshold,} +\DoxyCodeLine{00115\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \textcolor{keyword}{const}\ \textcolor{keywordtype}{int}\ num\_passes,\ \textcolor{keyword}{const}\ \textcolor{keywordtype}{int}\ num\_threads);} +\DoxyCodeLine{00116\ } +\DoxyCodeLine{00117\ \textcolor{preprocessor}{\#endif}} + +\end{DoxyCode} From 653a247f10b036435f43636858a97ad1f7237687 Mon Sep 17 00:00:00 2001 From: Mahmudur Date: Thu, 7 Nov 2024 14:12:46 -0500 Subject: [PATCH 23/35] remove unnecessary files --- html/bc_s.png | Bin 676 -> 0 bytes html/bc_sd.png | Bin 635 -> 0 bytes html/clipboard.js | 61 - html/closed.png | Bin 132 -> 0 bytes html/cookie.js | 58 - .../dir_68267d1309a1af8e8297ef4c3efbcdba.html | 108 - .../dir_dfdbda394c3f7a3aa55229f33a559c41.html | 108 - html/doc.svg | 12 - html/docd.svg | 12 - html/doxygen.css | 2244 --------------- html/doxygen.svg | 28 - html/doxygen_crawl.html | 22 - html/dynsections.js | 198 -- html/files.html | 105 - html/folderclosed.svg | 11 - html/folderclosedd.svg | 11 - html/folderopen.svg | 17 - 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---tooltip-link-color: #79C0FF; ---tooltip-shadow: none; ---fold-line-color: #808080; ---fold-minus-image: url('minusd.svg'); ---fold-plus-image: url('plusd.svg'); ---fold-minus-image-relpath: url('../../minusd.svg'); ---fold-plus-image-relpath: url('../../plusd.svg'); - -/** font-family */ ---font-family-normal: Roboto,sans-serif; ---font-family-monospace: 'JetBrains Mono',Consolas,Monaco,'Andale Mono','Ubuntu Mono',monospace,fixed; ---font-family-nav: 'Lucida Grande',Geneva,Helvetica,Arial,sans-serif; ---font-family-title: Tahoma,Arial,sans-serif; ---font-family-toc: Verdana,'DejaVu Sans',Geneva,sans-serif; ---font-family-search: Arial,Verdana,sans-serif; ---font-family-icon: Arial,Helvetica; ---font-family-tooltip: Roboto,sans-serif; - -/** special sections */ ---warning-color-bg: #2e1917; ---warning-color-hl: #ad2617; ---warning-color-text: #f5b1aa; ---note-color-bg: #3b2e04; ---note-color-hl: #f1b602; ---note-color-text: #ceb670; ---todo-color-bg: #163750; ---todo-color-hl: #1982D2; ---todo-color-text: #dcf0fa; ---test-color-bg: #121258; ---test-color-hl: #4242cf; ---test-color-text: #c0c0da; ---deprecated-color-bg: #2e323b; ---deprecated-color-hl: #738396; ---deprecated-color-text: #abb0bd; ---bug-color-bg: #2a2536; ---bug-color-hl: #7661b3; ---bug-color-text: #ae9ed6; ---invariant-color-bg: #303a35; ---invariant-color-hl: #76ce96; ---invariant-color-text: #cceed5; -}} -body { - background-color: var(--page-background-color); - color: var(--page-foreground-color); -} - -body, table, div, p, dl { - font-weight: 400; - font-size: 14px; - font-family: var(--font-family-normal); - line-height: 22px; -} - -/* @group Heading Levels */ - -.title { - font-family: var(--font-family-normal); - line-height: 28px; - font-size: 150%; - font-weight: bold; - margin: 10px 2px; -} - -h1.groupheader { - font-size: 150%; -} - -h2.groupheader { - border-bottom: 1px solid var(--group-header-separator-color); - color: var(--group-header-color); - font-size: 150%; - font-weight: normal; 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- margin-left: 50px; - width: 90%; - line-height: 1.15em; -} - -.classindex dl.even { - background-color: var(--index-even-item-bg-color); -} - -.classindex dl.odd { - background-color: var(--index-odd-item-bg-color); -} - -@media(min-width: 1120px) { - .classindex dl { - column-count:2 - } -} - -@media(min-width: 1320px) { - .classindex dl { - column-count:3 - } -} - - -/* @group Link Styling */ - -a { - color: var(--page-link-color); - font-weight: normal; - text-decoration: none; -} - -.contents a:visited { - color: var(--page-visited-link-color); -} - -a:hover { - text-decoration: none; - background: linear-gradient(to bottom, transparent 0,transparent calc(100% - 1px), currentColor 100%); -} - -a:hover > span.arrow { - text-decoration: none; - background : var(--nav-background-color); -} - -a.el { - font-weight: bold; -} - -a.elRef { -} - -a.code, a.code:visited, a.line, a.line:visited { - color: var(--code-link-color); -} - -a.codeRef, a.codeRef:visited, a.lineRef, a.lineRef:visited { - color: var(--code-external-link-color); -} - -a.code.hl_class { /* style for links to class names in code snippets */ } -a.code.hl_struct { /* style for links to struct names in code snippets */ } -a.code.hl_union { /* style for links to union names in code snippets */ } -a.code.hl_interface { /* style for links to interface names in code snippets */ } -a.code.hl_protocol { /* style for links to protocol names in code snippets */ } -a.code.hl_category { /* style for links to category names in code snippets */ } -a.code.hl_exception { /* style for links to exception names in code snippets */ } -a.code.hl_service { /* style for links to service names in code snippets */ } -a.code.hl_singleton { /* style for links to singleton names in code snippets */ } -a.code.hl_concept { /* style for links to concept names in code snippets */ } -a.code.hl_namespace { /* style for links to namespace names in code snippets */ } -a.code.hl_package { /* style for links to package names in code snippets */ } -a.code.hl_define { /* style for links to macro names in code snippets */ } -a.code.hl_function { /* style for links to function names in code snippets */ } -a.code.hl_variable { /* style for links to variable names in code snippets */ } -a.code.hl_typedef { /* style for links to typedef names in code snippets */ } -a.code.hl_enumvalue { /* style for links to enum value names in code snippets */ } -a.code.hl_enumeration { /* style for links to enumeration names in code snippets */ } -a.code.hl_signal { /* style for links to Qt signal names in code snippets */ } -a.code.hl_slot { /* style for links to Qt slot names in code snippets */ } -a.code.hl_friend { /* style for links to friend names in code snippets */ } -a.code.hl_dcop { /* style for links to KDE3 DCOP names in code snippets */ } -a.code.hl_property { /* style for links to property names in code snippets */ } -a.code.hl_event { /* style for links to event names in code snippets */ } -a.code.hl_sequence { /* style for links to sequence names in code snippets */ } -a.code.hl_dictionary { /* style for links to dictionary names in code snippets */ } - -/* @end */ - -dl.el { - margin-left: -1cm; -} - -ul.check { - list-style:none; - text-indent: -16px; - padding-left: 38px; -} -li.unchecked:before { - content: "\2610\A0"; -} -li.checked:before { - content: "\2611\A0"; -} - -ol { - text-indent: 0px; -} - -ul { - text-indent: 0px; - overflow: visible; -} - -ul.multicol { - -moz-column-gap: 1em; - -webkit-column-gap: 1em; - column-gap: 1em; - -moz-column-count: 3; - -webkit-column-count: 3; - column-count: 3; - list-style-type: none; -} - -#side-nav ul { - overflow: visible; /* reset ul rule for scroll bar in GENERATE_TREEVIEW window */ -} - -#main-nav ul { - overflow: visible; /* reset ul rule for the navigation bar drop down lists */ -} - -.fragment { - text-align: left; - direction: ltr; - overflow-x: auto; - overflow-y: hidden; - position: relative; - min-height: 12px; - margin: 10px 0px; - padding: 10px 10px; - border: 1px solid var(--fragment-border-color); - border-radius: 4px; - background-color: var(--fragment-background-color); - color: var(--fragment-foreground-color); 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- white-space: -moz-pre-wrap; /* Moz */ - white-space: -pre-wrap; /* Opera 4-6 */ - white-space: -o-pre-wrap; /* Opera 7 */ - white-space: pre-wrap; /* CSS3 */ - word-wrap: break-word; /* IE 5.5+ */ - text-indent: -53px; - padding-left: 53px; - padding-bottom: 0px; - margin: 0px; - -webkit-transition-property: background-color, box-shadow; - -webkit-transition-duration: 0.5s; - -moz-transition-property: background-color, box-shadow; - -moz-transition-duration: 0.5s; - -ms-transition-property: background-color, box-shadow; - -ms-transition-duration: 0.5s; - -o-transition-property: background-color, box-shadow; - -o-transition-duration: 0.5s; - transition-property: background-color, box-shadow; - transition-duration: 0.5s; -} - -div.line:after { - content:"\000A"; - white-space: pre; -} - -div.line.glow { - background-color: var(--glow-color); - box-shadow: 0 0 10px var(--glow-color); -} - -span.fold { - margin-left: 5px; - margin-right: 1px; - margin-top: 0px; - margin-bottom: 0px; - padding: 0px; - display: inline-block; - width: 12px; - height: 12px; - background-repeat:no-repeat; - background-position:center; -} - -span.lineno { - padding-right: 4px; - margin-right: 9px; - text-align: right; - border-right: 2px solid var(--fragment-lineno-border-color); - color: var(--fragment-lineno-foreground-color); - background-color: var(--fragment-lineno-background-color); - white-space: pre; -} -span.lineno a, span.lineno a:visited { - color: var(--fragment-lineno-link-fg-color); - background-color: var(--fragment-lineno-link-bg-color); -} - -span.lineno a:hover { - color: var(--fragment-lineno-link-hover-fg-color); - background-color: var(--fragment-lineno-link-hover-bg-color); -} - -.lineno { - -webkit-touch-callout: none; - -webkit-user-select: none; - -khtml-user-select: none; - -moz-user-select: none; - -ms-user-select: none; - user-select: none; -} - -div.classindex ul { - list-style: none; - padding-left: 0; -} - -div.classindex span.ai { - display: inline-block; -} - -div.groupHeader { - margin-left: 16px; - margin-top: 12px; - font-weight: bold; -} - -div.groupText { - margin-left: 16px; - font-style: italic; -} - -body { - color: var(--page-foreground-color); - margin: 0; -} - -div.contents { - margin-top: 10px; - margin-left: 12px; - margin-right: 8px; -} - -p.formulaDsp { - text-align: center; -} - -img.dark-mode-visible { - display: none; -} -img.light-mode-visible { - display: none; -} - -img.formulaInl, img.inline { - vertical-align: middle; -} - -div.center { - text-align: center; - margin-top: 0px; - margin-bottom: 0px; - padding: 0px; -} - -div.center img { - border: 0px; -} - -address.footer { - text-align: right; - padding-right: 12px; -} - -img.footer { - border: 0px; - vertical-align: middle; - width: var(--footer-logo-width); -} - -.compoundTemplParams { - color: var(--memdecl-template-color); - font-size: 80%; - line-height: 120%; -} - -/* @group Code Colorization */ - -span.keyword { - color: var(--code-keyword-color); -} - -span.keywordtype { - color: var(--code-type-keyword-color); -} - -span.keywordflow { - color: var(--code-flow-keyword-color); -} - -span.comment { - color: var(--code-comment-color); -} - -span.preprocessor { - color: var(--code-preprocessor-color); -} - -span.stringliteral { - color: var(--code-string-literal-color); -} - -span.charliteral { - color: var(--code-char-literal-color); -} - -span.xmlcdata { - color: var(--code-xml-cdata-color); -} - -span.vhdldigit { - color: var(--code-vhdl-digit-color); -} - -span.vhdlchar { - color: var(--code-vhdl-char-color); -} - -span.vhdlkeyword { - color: var(--code-vhdl-keyword-color); -} - -span.vhdllogic { - color: var(--code-vhdl-logic-color); -} - -blockquote { - background-color: var(--blockquote-background-color); - border-left: 2px solid var(--blockquote-border-color); - margin: 0 24px 0 4px; - padding: 0 12px 0 16px; -} - -/* @end */ - -td.tiny { - font-size: 75%; -} - -.dirtab { - padding: 4px; - border-collapse: collapse; - border: 1px solid var(--table-cell-border-color); -} - -th.dirtab { - background-color: var(--table-header-background-color); - color: var(--table-header-foreground-color); - font-weight: bold; -} - -hr { - height: 0px; - border: none; - border-top: 1px solid var(--separator-color); -} - -hr.footer { - height: 1px; -} - -/* @group Member Descriptions */ - -table.memberdecls { - border-spacing: 0px; - padding: 0px; -} - -.memberdecls td, .fieldtable tr { - -webkit-transition-property: background-color, box-shadow; - -webkit-transition-duration: 0.5s; - -moz-transition-property: background-color, box-shadow; - -moz-transition-duration: 0.5s; - -ms-transition-property: background-color, box-shadow; - -ms-transition-duration: 0.5s; - -o-transition-property: background-color, box-shadow; - -o-transition-duration: 0.5s; - transition-property: background-color, box-shadow; - transition-duration: 0.5s; -} - -.memberdecls td.glow, .fieldtable tr.glow { - background-color: var(--glow-color); - box-shadow: 0 0 15px var(--glow-color); -} - -.mdescLeft, .mdescRight, -.memItemLeft, .memItemRight, -.memTemplItemLeft, .memTemplItemRight, .memTemplParams { - background-color: var(--memdecl-background-color); - border: none; - margin: 4px; - padding: 1px 0 0 8px; -} - -.mdescLeft, .mdescRight { - padding: 0px 8px 4px 8px; - color: var(--memdecl-foreground-color); -} - -.memSeparator { - border-bottom: 1px solid var(--memdecl-separator-color); - line-height: 1px; - margin: 0px; - padding: 0px; -} - -.memItemLeft, .memTemplItemLeft { - white-space: nowrap; -} - -.memItemRight, .memTemplItemRight { - width: 100%; -} - -.memTemplParams { - color: var(--memdecl-template-color); - white-space: nowrap; - font-size: 80%; -} - -/* @end */ - -/* @group Member Details */ - -/* Styles for detailed member documentation */ - -.memtitle { - padding: 8px; - border-top: 1px solid var(--memdef-border-color); - border-left: 1px solid var(--memdef-border-color); - border-right: 1px solid var(--memdef-border-color); - border-top-right-radius: 4px; - border-top-left-radius: 4px; - margin-bottom: -1px; - background-image: var(--memdef-title-gradient-image); - background-repeat: repeat-x; - background-color: var(--memdef-title-background-color); - line-height: 1.25; - font-weight: 300; - float:left; -} - -.permalink -{ - font-size: 65%; - display: inline-block; - vertical-align: middle; -} - -.memtemplate { - font-size: 80%; - color: var(--memdef-template-color); - font-weight: normal; - margin-left: 9px; -} - -.mempage { - width: 100%; -} - -.memitem { - padding: 0; - margin-bottom: 10px; - margin-right: 5px; - -webkit-transition: box-shadow 0.5s linear; - -moz-transition: box-shadow 0.5s linear; - -ms-transition: box-shadow 0.5s linear; - -o-transition: box-shadow 0.5s linear; - transition: box-shadow 0.5s linear; - display: table !important; - width: 100%; -} - -.memitem.glow { - box-shadow: 0 0 15px var(--glow-color); -} - -.memname { - font-weight: 400; - margin-left: 6px; -} - -.memname td { - vertical-align: bottom; -} - -.memproto, dl.reflist dt { - border-top: 1px solid var(--memdef-border-color); - border-left: 1px solid var(--memdef-border-color); - border-right: 1px solid var(--memdef-border-color); - padding: 6px 0px 6px 0px; - color: var(--memdef-proto-text-color); - font-weight: bold; - text-shadow: var(--memdef-proto-text-shadow); - background-color: var(--memdef-proto-background-color); - box-shadow: 5px 5px 5px rgba(0, 0, 0, 0.15); - border-top-right-radius: 4px; -} - -.overload { - font-family: var(--font-family-monospace); - font-size: 65%; -} - -.memdoc, dl.reflist dd { - border-bottom: 1px solid var(--memdef-border-color); - border-left: 1px solid var(--memdef-border-color); - border-right: 1px solid var(--memdef-border-color); - padding: 6px 10px 2px 10px; - border-top-width: 0; - background-image:url('nav_g.png'); - background-repeat:repeat-x; - background-color: var(--memdef-doc-background-color); - /* opera specific markup */ - border-bottom-left-radius: 4px; - border-bottom-right-radius: 4px; - box-shadow: 5px 5px 5px rgba(0, 0, 0, 0.15); - /* firefox specific markup */ - -moz-border-radius-bottomleft: 4px; - -moz-border-radius-bottomright: 4px; - -moz-box-shadow: rgba(0, 0, 0, 0.15) 5px 5px 5px; - /* webkit specific markup */ - -webkit-border-bottom-left-radius: 4px; - -webkit-border-bottom-right-radius: 4px; - -webkit-box-shadow: 5px 5px 5px rgba(0, 0, 0, 0.15); -} - -dl.reflist dt { - padding: 5px; -} - -dl.reflist dd { - margin: 0px 0px 10px 0px; - padding: 5px; -} - -.paramkey { - text-align: right; -} - -.paramtype { - white-space: nowrap; - padding: 0px; - padding-bottom: 1px; -} - -.paramname { - white-space: nowrap; - padding: 0px; - padding-bottom: 1px; - margin-left: 2px; -} - -.paramname em { - color: var(--memdef-param-name-color); - font-style: normal; - margin-right: 1px; -} - -.paramname .paramdefval { - font-family: var(--font-family-monospace); -} - -.params, .retval, .exception, .tparams { - margin-left: 0px; - padding-left: 0px; -} - -.params .paramname, .retval .paramname, .tparams .paramname, .exception .paramname { - font-weight: bold; - vertical-align: top; -} - -.params .paramtype, .tparams .paramtype { - font-style: italic; - vertical-align: top; -} - -.params .paramdir, .tparams .paramdir { - font-family: var(--font-family-monospace); 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e=t.dataSM("scroll"),i=$(window).scrollTop()-t.dataSM("parent-a").offset().top-e.itemH;this.cssTransforms3d&&(i=-(parseFloat(t.css("margin-top"))-i)),$.extend(e,{upEnd:i,downEnd:i+this.getViewportHeight()-e.subH})},menuScrollStop:function(t){return this.scrollTimeout?(cancelAnimationFrame(this.scrollTimeout),this.scrollTimeout=0,t.dataSM("scroll").step=1,!0):void 0},menuScrollTouch:function(t,e){if(e=e.originalEvent,isTouchEvent(e)){var i=this.getTouchPoint(e);if(this.getClosestMenu(i.target)==t[0]){var s=t.dataSM("scroll");if(/(start|down)$/i.test(e.type))this.menuScrollStop(t)?(e.preventDefault(),this.$touchScrollingSub=t):this.$touchScrollingSub=null,this.menuScrollRefreshData(t),$.extend(s,{touchStartY:i.pageY,touchStartTime:e.timeStamp});else if(/move$/i.test(e.type)){var o=void 0!==s.touchY?s.touchY:s.touchStartY;if(void 0!==o&&o!=i.pageY){this.$touchScrollingSub=t;var a=i.pageY>o;void 0!==s.up&&s.up!=a&&$.extend(s,{touchStartY:i.pageY,touchStartTime:e.timeStamp}),$.extend(s,{up:a,touchY:i.pageY}),this.menuScroll(t,!0,Math.abs(i.pageY-o))}e.preventDefault()}else void 0!==s.touchY&&((s.momentum=15*Math.pow(Math.abs(i.pageY-s.touchStartY)/(e.timeStamp-s.touchStartTime),2))&&(this.menuScrollStop(t),this.menuScroll(t),e.preventDefault()),delete s.touchY)}}},menuShow:function(t){if((t.dataSM("beforefirstshowfired")||(t.dataSM("beforefirstshowfired",!0),this.$root.triggerHandler("beforefirstshow.smapi",t[0])!==!1))&&this.$root.triggerHandler("beforeshow.smapi",t[0])!==!1&&(t.dataSM("shown-before",!0),canAnimate&&t.stop(!0,!0),!t.is(":visible"))){var e=t.dataSM("parent-a"),i=this.isCollapsible();if((this.opts.keepHighlighted||i)&&e.addClass("highlighted"),i)t.removeClass("sm-nowrap").css({zIndex:"",width:"auto",minWidth:"",maxWidth:"",top:"",left:"",marginLeft:"",marginTop:""});else{if(t.css("z-index",this.zIndexInc=(this.zIndexInc||this.getStartZIndex())+1),(this.opts.subMenusMinWidth||this.opts.subMenusMaxWidth)&&(t.css({width:"auto",minWidth:"",maxWidth:""}).addClass("sm-nowrap"),this.opts.subMenusMinWidth&&t.css("min-width",this.opts.subMenusMinWidth),this.opts.subMenusMaxWidth)){var s=this.getWidth(t);t.css("max-width",this.opts.subMenusMaxWidth),s>this.getWidth(t)&&t.removeClass("sm-nowrap").css("width",this.opts.subMenusMaxWidth)}this.menuPosition(t)}var o=function(){t.css("overflow","")};i?canAnimate&&this.opts.collapsibleShowFunction?this.opts.collapsibleShowFunction.call(this,t,o):t.show(this.opts.collapsibleShowDuration,o):canAnimate&&this.opts.showFunction?this.opts.showFunction.call(this,t,o):t.show(this.opts.showDuration,o),e.attr("aria-expanded","true"),t.attr({"aria-expanded":"true","aria-hidden":"false"}),this.visibleSubMenus.push(t),this.$root.triggerHandler("show.smapi",t[0])}},popupHide:function(t){this.hideTimeout&&(clearTimeout(this.hideTimeout),this.hideTimeout=0);var e=this;this.hideTimeout=setTimeout(function(){e.menuHideAll()},t?1:this.opts.hideTimeout)},popupShow:function(t,e){if(!this.opts.isPopup)return alert('SmartMenus jQuery Error:\n\nIf you want to show this menu via the "popupShow" method, set the isPopup:true option.'),void 0;if(this.hideTimeout&&(clearTimeout(this.hideTimeout),this.hideTimeout=0),this.$root.dataSM("shown-before",!0),canAnimate&&this.$root.stop(!0,!0),!this.$root.is(":visible")){this.$root.css({left:t,top:e});var i=this,s=function(){i.$root.css("overflow","")};canAnimate&&this.opts.showFunction?this.opts.showFunction.call(this,this.$root,s):this.$root.show(this.opts.showDuration,s),this.visibleSubMenus[0]=this.$root}},refresh:function(){this.destroy(!0),this.init(!0)},rootKeyDown:function(t){if(this.handleEvents())switch(t.keyCode){case 27:var e=this.activatedItems[0];if(e){this.menuHideAll(),e[0].focus();var i=e.dataSM("sub");i&&this.menuHide(i)}break;case 32:var s=$(t.target);if(s.is("a")&&this.handleItemEvents(s)){var i=s.dataSM("sub");i&&!i.is(":visible")&&(this.itemClick({currentTarget:t.target}),t.preventDefault())}}},rootOut:function(t){if(this.handleEvents()&&!this.isTouchMode()&&t.target!=this.$root[0]&&(this.hideTimeout&&(clearTimeout(this.hideTimeout),this.hideTimeout=0),!this.opts.showOnClick||!this.opts.hideOnClick)){var e=this;this.hideTimeout=setTimeout(function(){e.menuHideAll()},this.opts.hideTimeout)}},rootOver:function(t){this.handleEvents()&&!this.isTouchMode()&&t.target!=this.$root[0]&&this.hideTimeout&&(clearTimeout(this.hideTimeout),this.hideTimeout=0)},winResize:function(t){if(this.handleEvents()){if(!("onorientationchange"in window)||"orientationchange"==t.type){var e=this.isCollapsible();this.wasCollapsible&&e||(this.activatedItems.length&&this.activatedItems[this.activatedItems.length-1][0].blur(),this.menuHideAll()),this.wasCollapsible=e}}else if(this.$disableOverlay){var i=this.$root.offset();this.$disableOverlay.css({top:i.top,left:i.left,width:this.$root.outerWidth(),height:this.$root.outerHeight()})}}}}),$.fn.dataSM=function(t,e){return e?this.data(t+"_smartmenus",e):this.data(t+"_smartmenus")},$.fn.removeDataSM=function(t){return this.removeData(t+"_smartmenus")},$.fn.smartmenus=function(options){if("string"==typeof options){var args=arguments,method=options;return Array.prototype.shift.call(args),this.each(function(){var t=$(this).data("smartmenus");t&&t[method]&&t[method].apply(t,args)})}return this.each(function(){var dataOpts=$(this).data("sm-options")||null;if(dataOpts)try{dataOpts=eval("("+dataOpts+")")}catch(e){dataOpts=null,alert('ERROR\n\nSmartMenus jQuery init:\nInvalid "data-sm-options" attribute value syntax.')}new $.SmartMenus(this,$.extend({},$.fn.smartmenus.defaults,options,dataOpts))})},$.fn.smartmenus.defaults={isPopup:!1,mainMenuSubOffsetX:0,mainMenuSubOffsetY:0,subMenusSubOffsetX:0,subMenusSubOffsetY:0,subMenusMinWidth:"10em",subMenusMaxWidth:"20em",subIndicators:!0,subIndicatorsPos:"append",subIndicatorsText:"",scrollStep:30,scrollAccelerate:!0,showTimeout:250,hideTimeout:500,showDuration:0,showFunction:null,hideDuration:0,hideFunction:function(t,e){t.fadeOut(200,e)},collapsibleShowDuration:0,collapsibleShowFunction:function(t,e){t.slideDown(200,e)},collapsibleHideDuration:0,collapsibleHideFunction:function(t,e){t.slideUp(200,e)},showOnClick:!1,hideOnClick:!0,noMouseOver:!1,keepInViewport:!0,keepHighlighted:!0,markCurrentItem:!1,markCurrentTree:!0,rightToLeftSubMenus:!1,bottomToTopSubMenus:!1,collapsibleBehavior:"default"},$}); \ No newline at end of file diff --git a/html/menu.js b/html/menu.js deleted file mode 100644 index 0fd1e990..00000000 --- a/html/menu.js +++ /dev/null @@ -1,134 +0,0 @@ -/* - @licstart The following is the entire license notice for the JavaScript code in this file. - - The MIT License (MIT) - - Copyright (C) 1997-2020 by Dimitri van Heesch - - Permission is hereby granted, free of charge, to any person obtaining a copy of this software - and associated documentation files (the "Software"), to deal in the Software without restriction, - including without limitation the rights to use, copy, modify, merge, publish, distribute, - sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is - furnished to do so, subject to the following conditions: - - The above copyright notice and this permission notice shall be included in all copies or - substantial portions of the Software. - - THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING - BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND - NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, - DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, - OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. - - @licend The above is the entire license notice for the JavaScript code in this file - */ -function initMenu(relPath,searchEnabled,serverSide,searchPage,search,treeview) { - function makeTree(data,relPath) { - let result=''; - if ('children' in data) { - result+='
      '; - for (let i in data.children) { - let url; - const link = data.children[i].url; - if (link.substring(0,1)=='^') { - url = link.substring(1); - } else { - url = relPath+link; - } - result+='
    • '+ - data.children[i].text+''+ - makeTree(data.children[i],relPath)+'
      • '; - } - result+='
    '; - } - return result; - } - let searchBoxHtml; - if (searchEnabled) { - if (serverSide) { - searchBoxHtml='
    '+ - '
    '+ - '
     '+ - ''+ - '
    '+ - '
    '+ - '
    '+ - '
    '; - } else { - searchBoxHtml='
    '+ - ''+ - ' '+ - ''+ - ''+ - ''+ - ''+ - ''+ - '
    '; - } - } - - $('#main-nav').before('
    '+ - ''+ - ''+ - '
    '); - $('#main-nav').append(makeTree(menudata,relPath)); - $('#main-nav').children(':first').addClass('sm sm-dox').attr('id','main-menu'); - if (searchBoxHtml) { - $('#main-menu').append('
  • '); - } - const $mainMenuState = $('#main-menu-state'); - let prevWidth = 0; - if ($mainMenuState.length) { - const initResizableIfExists = function() { - if (typeof initResizable==='function') initResizable(treeview); - } - // animate mobile menu - $mainMenuState.change(function() { - const $menu = $('#main-menu'); - let options = { duration: 250, step: initResizableIfExists }; - if (this.checked) { - options['complete'] = () => $menu.css('display', 'block'); - $menu.hide().slideDown(options); - } else { - options['complete'] = () => $menu.css('display', 'none'); - $menu.show().slideUp(options); - } - }); - // set default menu visibility - const resetState = function() { - const $menu = $('#main-menu'); - const newWidth = $(window).outerWidth(); - if (newWidth!=prevWidth) { - if ($(window).outerWidth()<768) { - $mainMenuState.prop('checked',false); $menu.hide(); - $('#searchBoxPos1').html(searchBoxHtml); - $('#searchBoxPos2').hide(); - } else { - $menu.show(); - $('#searchBoxPos1').empty(); - $('#searchBoxPos2').html(searchBoxHtml); - $('#searchBoxPos2').show(); - } - if (typeof searchBox!=='undefined') { - searchBox.CloseResultsWindow(); - } - prevWidth = newWidth; - } - } - $(window).ready(function() { resetState(); initResizableIfExists(); }); - $(window).resize(resetState); - } - $('#main-menu').smartmenus(); -} -/* @license-end */ diff --git a/html/menudata.js b/html/menudata.js deleted file mode 100644 index c63056b0..00000000 --- a/html/menudata.js +++ /dev/null @@ -1,28 +0,0 @@ -/* - @licstart The following is the entire license notice for the JavaScript code in this file. - - The MIT License (MIT) - - Copyright (C) 1997-2020 by Dimitri van Heesch - - Permission is hereby granted, free of charge, to any person obtaining a copy of this software - and associated documentation files (the "Software"), to deal in the Software without restriction, - including without limitation the rights to use, copy, modify, merge, publish, distribute, - sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is - furnished to do so, subject to the following conditions: - - The above copyright notice and this permission notice shall be included in all copies or - substantial portions of the Software. - - THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING - BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND - NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, - DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, - OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. - - @licend The above is the entire license notice for the JavaScript code in this file -*/ -var menudata={children:[ -{text:"Main Page",url:"index.html"}, -{text:"Files",url:"files.html",children:[ -{text:"File List",url:"files.html"}]}]} diff --git a/html/minus.svg b/html/minus.svg deleted file mode 100644 index f70d0c1a..00000000 --- a/html/minus.svg +++ /dev/null @@ -1,8 +0,0 @@ - - - - - - - - diff --git a/html/minusd.svg b/html/minusd.svg deleted file mode 100644 index 5f8e8796..00000000 --- a/html/minusd.svg +++ /dev/null @@ -1,8 +0,0 @@ - - - - - - - - diff --git a/html/nav_f.png b/html/nav_f.png deleted file mode 100644 index 72a58a529ed3a9ed6aa0c51a79cf207e026deee2..0000000000000000000000000000000000000000 GIT binary patch literal 0 HcmV?d00001 literal 153 zcmeAS@N?(olHy`uVBq!ia0vp^j6iI`!2~2XGqLUlQVE_ejv*C{Z|{2ZH7M}7UYxc) zn!W8uqtnIQ>_z8U diff --git a/html/nav_fd.png b/html/nav_fd.png deleted file mode 100644 index 032fbdd4c54f54fa9a2e6423b94ef4b2ebdfaceb..0000000000000000000000000000000000000000 GIT binary patch literal 0 HcmV?d00001 literal 169 zcmeAS@N?(olHy`uVBq!ia0vp^j6iI`!2~2XGqLUlQU#tajv*C{Z|C~*H7f|XvG1G8 zt7aS*L7xwMeS}!z6R#{C5tIw-s~AJ==F^i}x3XyJseHR@yF& zerFf(Zf;Dd{+(0lDIROL@Sj-Ju2JQ8&-n%4%q?>|^bShc&lR?}7HeMo@BDl5N(aHY Uj$gdr1MOz;boFyt=akR{0D!zeaR2}S diff --git a/html/nav_g.png b/html/nav_g.png deleted file mode 100644 index 2093a237a94f6c83e19ec6e5fd42f7ddabdafa81..0000000000000000000000000000000000000000 GIT binary patch literal 0 HcmV?d00001 literal 95 zcmeAS@N?(olHy`uVBq!ia0vp^j6lrB!3HFm1ilyoDK$?Q$B+ufw|5PB85lU25BhtE tr?otc=hd~V+ws&_A@j8Fiv!KF$B+ufw|5=67#uj90@pIL wZ=Q8~_Ju`#59=RjDrmm`tMD@M=!-l18IR?&vFVdQ&MBb@0HFXL6W-eg#Jd_@e6*DPn)w;=|1H}Zvm9l6xXXB%>yL=NQU;mg M>FVdQ&MBb@0Bdt1Qvd(} diff --git a/html/navtree.css b/html/navtree.css deleted file mode 100644 index 69211d4a..00000000 --- a/html/navtree.css +++ /dev/null @@ -1,149 +0,0 @@ -#nav-tree .children_ul { - margin:0; - padding:4px; -} - -#nav-tree ul { - list-style:none outside none; - margin:0px; - padding:0px; -} - -#nav-tree li { - white-space:nowrap; - margin:0px; - padding:0px; -} - -#nav-tree .plus { - margin:0px; -} - -#nav-tree .selected { - background-image: url('tab_a.png'); - background-repeat:repeat-x; - color: var(--nav-text-active-color); - text-shadow: var(--nav-text-active-shadow); -} - -#nav-tree .selected .arrow { - color: var(--nav-arrow-selected-color); - text-shadow: none; -} - -#nav-tree img { - margin:0px; - padding:0px; - border:0px; - vertical-align: middle; -} - -#nav-tree a { - text-decoration:none; - padding:0px; - margin:0px; -} - -#nav-tree .label { - margin:0px; - padding:0px; - font: 12px var(--font-family-nav); -} - -#nav-tree .label a { - padding:2px; -} - -#nav-tree .selected a { - text-decoration:none; - color:var(--nav-text-active-color); -} - -#nav-tree .children_ul { - margin:0px; - padding:0px; -} - -#nav-tree .item { - margin:0px; - padding:0px; -} - -#nav-tree { - padding: 0px 0px; - font-size:14px; - overflow:auto; -} - -#doc-content { - overflow:auto; - display:block; - padding:0px; - margin:0px; - -webkit-overflow-scrolling : touch; /* iOS 5+ */ -} - -#side-nav { - padding:0 6px 0 0; - margin: 0px; - display:block; - position: absolute; - left: 0px; - width: $width; - overflow : hidden; -} - -.ui-resizable .ui-resizable-handle { - display:block; -} - -.ui-resizable-e { - background-image:var(--nav-splitbar-image); - background-size:100%; - background-repeat:repeat-y; - background-attachment: scroll; - cursor:ew-resize; - height:100%; - right:0; - top:0; - width:6px; -} - -.ui-resizable-handle { - display:none; - font-size:0.1px; - position:absolute; - z-index:1; -} - -#nav-tree-contents { - margin: 6px 0px 0px 0px; -} - -#nav-tree { - background-repeat:repeat-x; - background-color: var(--nav-background-color); - -webkit-overflow-scrolling : touch; /* iOS 5+ */ -} - -#nav-sync { - position:absolute; - top:5px; - right:24px; - z-index:0; -} - -#nav-sync img { - opacity:0.3; -} - -#nav-sync img:hover { - opacity:0.9; -} - -@media print -{ - #nav-tree { display: none; } - div.ui-resizable-handle { display: none; position: relative; } -} - diff --git a/html/open.png b/html/open.png deleted file mode 100644 index 30f75c7efe2dd0c9e956e35b69777a02751f048b..0000000000000000000000000000000000000000 GIT binary patch literal 0 HcmV?d00001 literal 123 zcmeAS@N?(olHy`uVBq!ia0vp^oFL4>1|%O$WD@{VPM$7~Ar*{o?;hlAFyLXmaDC0y znK1_#cQqJWPES%4Uujug^TE?jMft$}Eq^WaR~)%f)vSNs&gek&x%A9X9sM - - - - - - - - diff --git a/html/plusd.svg b/html/plusd.svg deleted file mode 100644 index 0c65bfe9..00000000 --- a/html/plusd.svg +++ /dev/null @@ -1,9 +0,0 @@ - - - - - - - - - diff --git a/html/resize.js b/html/resize.js deleted file mode 100644 index 7d8cdc7d..00000000 --- a/html/resize.js +++ /dev/null @@ -1,145 +0,0 @@ -/* - @licstart The following is the entire license notice for the JavaScript code in this file. - - The MIT License (MIT) - - Copyright (C) 1997-2020 by Dimitri van Heesch - - Permission is hereby granted, free of charge, to any person obtaining a copy of this software - and associated documentation files (the "Software"), to deal in the Software without restriction, - including without limitation the rights to use, copy, modify, merge, publish, distribute, - sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is - furnished to do so, subject to the following conditions: - - The above copyright notice and this permission notice shall be included in all copies or - substantial portions of the Software. - - THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING - BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND - NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, - DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, - OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. - - @licend The above is the entire license notice for the JavaScript code in this file - */ - -function initResizable(treeview) { - let sidenav,navtree,content,header,footer,barWidth=6; - const RESIZE_COOKIE_NAME = ''+'width'; - - function resizeWidth() { - const sidenavWidth = $(sidenav).outerWidth(); - content.css({marginLeft:parseInt(sidenavWidth)+"px"}); - if (typeof page_layout!=='undefined' && page_layout==1) { - footer.css({marginLeft:parseInt(sidenavWidth)+"px"}); - } - Cookie.writeSetting(RESIZE_COOKIE_NAME,sidenavWidth-barWidth); - } - - function restoreWidth(navWidth) { - content.css({marginLeft:parseInt(navWidth)+barWidth+"px"}); - if (typeof page_layout!=='undefined' && page_layout==1) { - footer.css({marginLeft:parseInt(navWidth)+barWidth+"px"}); - } - sidenav.css({width:navWidth + "px"}); - } - - function resizeHeight(treeview) { - const headerHeight = header.outerHeight(); - const windowHeight = $(window).height(); - let contentHeight; - if (treeview) - { - const footerHeight = footer.outerHeight(); - let navtreeHeight,sideNavHeight; - if (typeof page_layout==='undefined' || page_layout==0) { /* DISABLE_INDEX=NO */ - contentHeight = windowHeight - headerHeight - footerHeight; - navtreeHeight = contentHeight; - sideNavHeight = contentHeight; - } else if (page_layout==1) { /* DISABLE_INDEX=YES */ - contentHeight = windowHeight - footerHeight; - navtreeHeight = windowHeight - headerHeight; - sideNavHeight = windowHeight; - } - navtree.css({height:navtreeHeight + "px"}); - sidenav.css({height:sideNavHeight + "px"}); - } - else - { - contentHeight = windowHeight - headerHeight; - } - content.css({height:contentHeight + "px"}); - if (location.hash.slice(1)) { - (document.getElementById(location.hash.slice(1))||document.body).scrollIntoView(); - } - } - - function collapseExpand() { - let newWidth; - if (sidenav.width()>0) { - newWidth=0; - } else { - const width = Cookie.readSetting(RESIZE_COOKIE_NAME,250); - newWidth = (width>250 && width<$(window).width()) ? width : 250; - } - restoreWidth(newWidth); - const sidenavWidth = $(sidenav).outerWidth(); - Cookie.writeSetting(RESIZE_COOKIE_NAME,sidenavWidth-barWidth); - } - - header = $("#top"); - content = $("#doc-content"); - footer = $("#nav-path"); - sidenav = $("#side-nav"); - if (!treeview) { -// title = $("#titlearea"); -// titleH = $(title).height(); -// let animating = false; -// content.on("scroll", function() { -// slideOpts = { duration: 200, -// step: function() { -// contentHeight = $(window).height() - header.outerHeight(); -// content.css({ height : contentHeight + "px" }); -// }, -// done: function() { animating=false; } -// }; -// if (content.scrollTop()>titleH && title.css('display')!='none' && !animating) { -// title.slideUp(slideOpts); -// animating=true; -// } else if (content.scrollTop()<=titleH && title.css('display')=='none' && !animating) { -// title.slideDown(slideOpts); -// animating=true; -// } -// }); - } else { - navtree = $("#nav-tree"); - $(".side-nav-resizable").resizable({resize: function(e, ui) { resizeWidth(); } }); - $(sidenav).resizable({ minWidth: 0 }); - } - $(window).resize(function() { resizeHeight(treeview); }); - if (treeview) - { - const device = navigator.userAgent.toLowerCase(); - const touch_device = device.match(/(iphone|ipod|ipad|android)/); - if (touch_device) { /* wider split bar for touch only devices */ - $(sidenav).css({ paddingRight:'20px' }); - $('.ui-resizable-e').css({ width:'20px' }); - $('#nav-sync').css({ right:'34px' }); - barWidth=20; - } - const width = Cookie.readSetting(RESIZE_COOKIE_NAME,250); - if (width) { restoreWidth(width); } else { resizeWidth(); } - } - resizeHeight(treeview); - const url = location.href; - const i=url.indexOf("#"); - if (i>=0) window.location.hash=url.substr(i); - const _preventDefault = function(evt) { evt.preventDefault(); }; - if (treeview) - { - $("#splitbar").bind("dragstart", _preventDefault).bind("selectstart", _preventDefault); - $(".ui-resizable-handle").dblclick(collapseExpand); - } - $(window).on('load',resizeHeight); -} -/* @license-end */ diff --git a/html/search/close.svg b/html/search/close.svg deleted file mode 100644 index 337d6cc1..00000000 --- a/html/search/close.svg +++ /dev/null @@ -1,18 +0,0 @@ - - - - - - diff --git a/html/search/mag.svg b/html/search/mag.svg deleted file mode 100644 index ffb6cf0d..00000000 --- a/html/search/mag.svg +++ /dev/null @@ -1,24 +0,0 @@ - - - - - - - diff --git a/html/search/mag_d.svg b/html/search/mag_d.svg deleted file mode 100644 index 4122773f..00000000 --- a/html/search/mag_d.svg +++ /dev/null @@ -1,24 +0,0 @@ - - - - - - - diff --git a/html/search/mag_sel.svg b/html/search/mag_sel.svg deleted file mode 100644 index 553dba87..00000000 --- a/html/search/mag_sel.svg +++ /dev/null @@ -1,31 +0,0 @@ - - - - - - - - - diff --git a/html/search/mag_seld.svg b/html/search/mag_seld.svg deleted file mode 100644 index c906f84c..00000000 --- a/html/search/mag_seld.svg +++ /dev/null @@ -1,31 +0,0 @@ - - - - - - - - - diff --git a/html/search/search.css b/html/search/search.css deleted file mode 100644 index 19f76f9d..00000000 --- a/html/search/search.css +++ /dev/null @@ -1,291 +0,0 @@ -/*---------------- Search Box positioning */ - -#main-menu > li:last-child { - /* This
  • object is the parent of the search bar */ - display: flex; - justify-content: center; - align-items: center; - height: 36px; - margin-right: 1em; -} - -/*---------------- Search box styling */ - -.SRPage * { - font-weight: normal; - line-height: normal; -} - -dark-mode-toggle { - margin-left: 5px; - display: flex; - float: right; -} - -#MSearchBox { - display: inline-block; - white-space : nowrap; - background: var(--search-background-color); - border-radius: 0.65em; - box-shadow: var(--search-box-shadow); - z-index: 102; -} - -#MSearchBox .left { - display: inline-block; - vertical-align: middle; - height: 1.4em; -} - -#MSearchSelect { - display: inline-block; - vertical-align: middle; - width: 20px; - height: 19px; - background-image: var(--search-magnification-select-image); - margin: 0 0 0 0.3em; - padding: 0; -} - -#MSearchSelectExt { - display: inline-block; - vertical-align: middle; - width: 10px; - height: 19px; - background-image: var(--search-magnification-image); - margin: 0 0 0 0.5em; - padding: 0; -} - - -#MSearchField { - display: inline-block; - vertical-align: middle; - width: 7.5em; - height: 19px; - margin: 0 0.15em; - padding: 0; - line-height: 1em; - border:none; - color: var(--search-foreground-color); - outline: none; - font-family: var(--font-family-search); - -webkit-border-radius: 0px; - border-radius: 0px; - background: none; -} - -@media(hover: none) { - /* to avoid zooming on iOS */ - #MSearchField { - font-size: 16px; - } -} - -#MSearchBox .right { - display: inline-block; - vertical-align: middle; - width: 1.4em; - height: 1.4em; -} - -#MSearchClose { - display: none; - font-size: inherit; - background : none; - border: none; - margin: 0; - padding: 0; - outline: none; - -} - -#MSearchCloseImg { - padding: 0.3em; - margin: 0; -} - -.MSearchBoxActive #MSearchField { - color: var(--search-active-color); -} - - - -/*---------------- Search filter selection */ - -#MSearchSelectWindow { - display: none; - position: absolute; - left: 0; top: 0; - border: 1px solid var(--search-filter-border-color); - background-color: var(--search-filter-background-color); - z-index: 10001; - padding-top: 4px; - padding-bottom: 4px; - -moz-border-radius: 4px; - -webkit-border-top-left-radius: 4px; - -webkit-border-top-right-radius: 4px; - -webkit-border-bottom-left-radius: 4px; - -webkit-border-bottom-right-radius: 4px; - -webkit-box-shadow: 5px 5px 5px rgba(0, 0, 0, 0.15); -} - -.SelectItem { - font: 8pt var(--font-family-search); - padding-left: 2px; - padding-right: 12px; - border: 0px; -} - -span.SelectionMark { - margin-right: 4px; - font-family: var(--font-family-monospace); - outline-style: none; - text-decoration: none; -} - -a.SelectItem { - display: block; - outline-style: none; - color: var(--search-filter-foreground-color); - text-decoration: none; - padding-left: 6px; - padding-right: 12px; -} - -a.SelectItem:focus, -a.SelectItem:active { - color: var(--search-filter-foreground-color); - outline-style: none; - text-decoration: none; -} - -a.SelectItem:hover { - color: var(--search-filter-highlight-text-color); - background-color: var(--search-filter-highlight-bg-color); - outline-style: none; - text-decoration: none; - cursor: pointer; - display: block; -} - -/*---------------- Search results window */ - -iframe#MSearchResults { - /*width: 60ex;*/ - height: 15em; -} - -#MSearchResultsWindow { - display: none; - position: absolute; - left: 0; top: 0; - border: 1px solid var(--search-results-border-color); - background-color: var(--search-results-background-color); - z-index:10000; - width: 300px; - height: 400px; - overflow: auto; -} - -/* ----------------------------------- */ - - -#SRIndex { - clear:both; -} - -.SREntry { - font-size: 10pt; - padding-left: 1ex; -} - -.SRPage .SREntry { - font-size: 8pt; - padding: 1px 5px; -} - -div.SRPage { - margin: 5px 2px; - background-color: var(--search-results-background-color); -} - -.SRChildren { - padding-left: 3ex; padding-bottom: .5em -} - -.SRPage .SRChildren { - display: none; -} - -.SRSymbol { - font-weight: bold; - color: var(--search-results-foreground-color); - font-family: var(--font-family-search); - text-decoration: none; - outline: none; -} - -a.SRScope { - display: block; - color: var(--search-results-foreground-color); - font-family: var(--font-family-search); - font-size: 8pt; - text-decoration: none; - outline: none; -} - -a.SRSymbol:focus, a.SRSymbol:active, -a.SRScope:focus, a.SRScope:active { - text-decoration: underline; -} - -span.SRScope { - padding-left: 4px; - font-family: var(--font-family-search); -} - -.SRPage .SRStatus { - padding: 2px 5px; - font-size: 8pt; - font-style: italic; - font-family: var(--font-family-search); -} - -.SRResult { - display: none; -} - -div.searchresults { - margin-left: 10px; - margin-right: 10px; -} - -/*---------------- External search page results */ - -.pages b { - color: white; - padding: 5px 5px 3px 5px; - background-image: var(--nav-gradient-active-image-parent); - background-repeat: repeat-x; - text-shadow: 0 1px 1px #000000; -} - -.pages { - line-height: 17px; - margin-left: 4px; - text-decoration: none; -} - -.hl { - font-weight: bold; -} - -#searchresults { - margin-bottom: 20px; -} - -.searchpages { - margin-top: 10px; -} - diff --git a/html/search/search.js b/html/search/search.js deleted file mode 100644 index 666af01e..00000000 --- a/html/search/search.js +++ /dev/null @@ -1,694 +0,0 @@ -/* - @licstart The following is the entire license notice for the JavaScript code in this file. - - The MIT License (MIT) - - Copyright (C) 1997-2020 by Dimitri van Heesch - - Permission is hereby granted, free of charge, to any person obtaining a copy of this software - and associated documentation files (the "Software"), to deal in the Software without restriction, - including without limitation the rights to use, copy, modify, merge, publish, distribute, - sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is - furnished to do so, subject to the following conditions: - - The above copyright notice and this permission notice shall be included in all copies or - substantial portions of the Software. - - THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING - BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND - NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, - DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, - OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. - - @licend The above is the entire license notice for the JavaScript code in this file - */ -const SEARCH_COOKIE_NAME = ''+'search_grp'; - -const searchResults = new SearchResults(); - -/* A class handling everything associated with the search panel. - - Parameters: - name - The name of the global variable that will be - storing this instance. Is needed to be able to set timeouts. - resultPath - path to use for external files -*/ -function SearchBox(name, resultsPath, extension) { - if (!name || !resultsPath) { alert("Missing parameters to SearchBox."); } - if (!extension || extension == "") { extension = ".html"; } - - function getXPos(item) { - let x = 0; - if (item.offsetWidth) { - while (item && item!=document.body) { - x += item.offsetLeft; - item = item.offsetParent; - } - } - return x; - } - - function getYPos(item) { - let y = 0; - if (item.offsetWidth) { - while (item && item!=document.body) { - y += item.offsetTop; - item = item.offsetParent; - } - } - return y; - } - - // ---------- Instance variables - this.name = name; - this.resultsPath = resultsPath; - this.keyTimeout = 0; - this.keyTimeoutLength = 500; - this.closeSelectionTimeout = 300; - this.lastSearchValue = ""; - this.lastResultsPage = ""; - this.hideTimeout = 0; - this.searchIndex = 0; - this.searchActive = false; - this.extension = extension; - - // ----------- DOM Elements - - this.DOMSearchField = () => document.getElementById("MSearchField"); - this.DOMSearchSelect = () => document.getElementById("MSearchSelect"); - this.DOMSearchSelectWindow = () => document.getElementById("MSearchSelectWindow"); - this.DOMPopupSearchResults = () => document.getElementById("MSearchResults"); - this.DOMPopupSearchResultsWindow = () => document.getElementById("MSearchResultsWindow"); - this.DOMSearchClose = () => document.getElementById("MSearchClose"); - this.DOMSearchBox = () => document.getElementById("MSearchBox"); - - // ------------ Event Handlers - - // Called when focus is added or removed from the search field. - this.OnSearchFieldFocus = function(isActive) { - this.Activate(isActive); - } - - this.OnSearchSelectShow = function() { - const searchSelectWindow = this.DOMSearchSelectWindow(); - const searchField = this.DOMSearchSelect(); - - const left = getXPos(searchField); - const top = getYPos(searchField) + searchField.offsetHeight; - - // show search selection popup - searchSelectWindow.style.display='block'; - searchSelectWindow.style.left = left + 'px'; - searchSelectWindow.style.top = top + 'px'; - - // stop selection hide timer - if (this.hideTimeout) { - clearTimeout(this.hideTimeout); - this.hideTimeout=0; - } - return false; // to avoid "image drag" default event - } - - this.OnSearchSelectHide = function() { - this.hideTimeout = setTimeout(this.CloseSelectionWindow.bind(this), - this.closeSelectionTimeout); - } - - // Called when the content of the search field is changed. - this.OnSearchFieldChange = function(evt) { - if (this.keyTimeout) { // kill running timer - clearTimeout(this.keyTimeout); - this.keyTimeout = 0; - } - - const e = evt ? evt : window.event; // for IE - if (e.keyCode==40 || e.keyCode==13) { - if (e.shiftKey==1) { - this.OnSearchSelectShow(); - const win=this.DOMSearchSelectWindow(); - for (let i=0;i do a search - this.Search(); - } - } - - this.OnSearchSelectKey = function(evt) { - const e = (evt) ? evt : window.event; // for IE - if (e.keyCode==40 && this.searchIndex0) { // Up - this.searchIndex--; - this.OnSelectItem(this.searchIndex); - } else if (e.keyCode==13 || e.keyCode==27) { - e.stopPropagation(); - this.OnSelectItem(this.searchIndex); - this.CloseSelectionWindow(); - this.DOMSearchField().focus(); - } - return false; - } - - // --------- Actions - - // Closes the results window. - this.CloseResultsWindow = function() { - this.DOMPopupSearchResultsWindow().style.display = 'none'; - this.DOMSearchClose().style.display = 'none'; - this.Activate(false); - } - - this.CloseSelectionWindow = function() { - this.DOMSearchSelectWindow().style.display = 'none'; - } - - // Performs a search. - this.Search = function() { - this.keyTimeout = 0; - - // strip leading whitespace - const searchValue = this.DOMSearchField().value.replace(/^ +/, ""); - - const code = searchValue.toLowerCase().charCodeAt(0); - let idxChar = searchValue.substr(0, 1).toLowerCase(); - if ( 0xD800 <= code && code <= 0xDBFF && searchValue > 1) { // surrogate pair - idxChar = searchValue.substr(0, 2); - } - - let jsFile; - let idx = indexSectionsWithContent[this.searchIndex].indexOf(idxChar); - if (idx!=-1) { - const hexCode=idx.toString(16); - jsFile = this.resultsPath + indexSectionNames[this.searchIndex] + '_' + hexCode + '.js'; - } - - const loadJS = function(url, impl, loc) { - const scriptTag = document.createElement('script'); - scriptTag.src = url; - scriptTag.onload = impl; - scriptTag.onreadystatechange = impl; - loc.appendChild(scriptTag); - } - - const domPopupSearchResultsWindow = this.DOMPopupSearchResultsWindow(); - const domSearchBox = this.DOMSearchBox(); - const domPopupSearchResults = this.DOMPopupSearchResults(); - const domSearchClose = this.DOMSearchClose(); - const resultsPath = this.resultsPath; - - const handleResults = function() { - document.getElementById("Loading").style.display="none"; - if (typeof searchData !== 'undefined') { - createResults(resultsPath); - document.getElementById("NoMatches").style.display="none"; - } - - if (idx!=-1) { - searchResults.Search(searchValue); - } else { // no file with search results => force empty search results - searchResults.Search('===='); - } - - if (domPopupSearchResultsWindow.style.display!='block') { - domSearchClose.style.display = 'inline-block'; - let left = getXPos(domSearchBox) + 150; - let top = getYPos(domSearchBox) + 20; - domPopupSearchResultsWindow.style.display = 'block'; - left -= domPopupSearchResults.offsetWidth; - const maxWidth = document.body.clientWidth; - const maxHeight = document.body.clientHeight; - let width = 300; - if (left<10) left=10; - if (width+left+8>maxWidth) width=maxWidth-left-8; - let height = 400; - if (height+top+8>maxHeight) height=maxHeight-top-8; - domPopupSearchResultsWindow.style.top = top + 'px'; - domPopupSearchResultsWindow.style.left = left + 'px'; - domPopupSearchResultsWindow.style.width = width + 'px'; - domPopupSearchResultsWindow.style.height = height + 'px'; - } - } - - if (jsFile) { - loadJS(jsFile, handleResults, this.DOMPopupSearchResultsWindow()); - } else { - handleResults(); - } - - this.lastSearchValue = searchValue; - } - - // -------- Activation Functions - - // Activates or deactivates the search panel, resetting things to - // their default values if necessary. - this.Activate = function(isActive) { - if (isActive || // open it - this.DOMPopupSearchResultsWindow().style.display == 'block' - ) { - this.DOMSearchBox().className = 'MSearchBoxActive'; - this.searchActive = true; - } else if (!isActive) { // directly remove the panel - this.DOMSearchBox().className = 'MSearchBoxInactive'; - this.searchActive = false; - this.lastSearchValue = '' - this.lastResultsPage = ''; - this.DOMSearchField().value = ''; - } - } -} - -// ----------------------------------------------------------------------- - -// The class that handles everything on the search results page. -function SearchResults() { - - function convertToId(search) { - let result = ''; - for (let i=0;i. - this.lastMatchCount = 0; - this.lastKey = 0; - this.repeatOn = false; - - // Toggles the visibility of the passed element ID. - this.FindChildElement = function(id) { - const parentElement = document.getElementById(id); - let element = parentElement.firstChild; - - while (element && element!=parentElement) { - if (element.nodeName.toLowerCase() == 'div' && element.className == 'SRChildren') { - return element; - } - - if (element.nodeName.toLowerCase() == 'div' && element.hasChildNodes()) { - element = element.firstChild; - } else if (element.nextSibling) { - element = element.nextSibling; - } else { - do { - element = element.parentNode; - } - while (element && element!=parentElement && !element.nextSibling); - - if (element && element!=parentElement) { - element = element.nextSibling; - } - } - } - } - - this.Toggle = function(id) { - const element = this.FindChildElement(id); - if (element) { - if (element.style.display == 'block') { - element.style.display = 'none'; - } else { - element.style.display = 'block'; - } - } - } - - // Searches for the passed string. If there is no parameter, - // it takes it from the URL query. - // - // Always returns true, since other documents may try to call it - // and that may or may not be possible. - this.Search = function(search) { - if (!search) { // get search word from URL - search = window.location.search; - search = search.substring(1); // Remove the leading '?' - search = unescape(search); - } - - search = search.replace(/^ +/, ""); // strip leading spaces - search = search.replace(/ +$/, ""); // strip trailing spaces - search = search.toLowerCase(); - search = convertToId(search); - - const resultRows = document.getElementsByTagName("div"); - let matches = 0; - - let i = 0; - while (i < resultRows.length) { - const row = resultRows.item(i); - if (row.className == "SRResult") { - let rowMatchName = row.id.toLowerCase(); - rowMatchName = rowMatchName.replace(/^sr\d*_/, ''); // strip 'sr123_' - - if (search.length<=rowMatchName.length && - rowMatchName.substr(0, search.length)==search) { - row.style.display = 'block'; - matches++; - } else { - row.style.display = 'none'; - } - } - i++; - } - document.getElementById("Searching").style.display='none'; - if (matches == 0) { // no results - document.getElementById("NoMatches").style.display='block'; - } else { // at least one result - document.getElementById("NoMatches").style.display='none'; - } - this.lastMatchCount = matches; - return true; - } - - // return the first item with index index or higher that is visible - this.NavNext = function(index) { - let focusItem; - for (;;) { - const focusName = 'Item'+index; - focusItem = document.getElementById(focusName); - if (focusItem && focusItem.parentNode.parentNode.style.display=='block') { - break; - } else if (!focusItem) { // last element - break; - } - focusItem=null; - index++; - } - return focusItem; - } - - this.NavPrev = function(index) { - let focusItem; - for (;;) { - const focusName = 'Item'+index; - focusItem = document.getElementById(focusName); - if (focusItem && focusItem.parentNode.parentNode.style.display=='block') { - break; - } else if (!focusItem) { // last element - break; - } - focusItem=null; - index--; - } - return focusItem; - } - - this.ProcessKeys = function(e) { - if (e.type == "keydown") { - this.repeatOn = false; - this.lastKey = e.keyCode; - } else if (e.type == "keypress") { - if (!this.repeatOn) { - if (this.lastKey) this.repeatOn = true; - return false; // ignore first keypress after keydown - } - } else if (e.type == "keyup") { - this.lastKey = 0; - this.repeatOn = false; - } - return this.lastKey!=0; - } - - this.Nav = function(evt,itemIndex) { - const e = (evt) ? evt : window.event; // for IE - if (e.keyCode==13) return true; - if (!this.ProcessKeys(e)) return false; - - if (this.lastKey==38) { // Up - const newIndex = itemIndex-1; - let focusItem = this.NavPrev(newIndex); - if (focusItem) { - let child = this.FindChildElement(focusItem.parentNode.parentNode.id); - if (child && child.style.display == 'block') { // children visible - let n=0; - let tmpElem; - for (;;) { // search for last child - tmpElem = document.getElementById('Item'+newIndex+'_c'+n); - if (tmpElem) { - focusItem = tmpElem; - } else { // found it! - break; - } - n++; - } - } - } - if (focusItem) { - focusItem.focus(); - } else { // return focus to search field - document.getElementById("MSearchField").focus(); - } - } else if (this.lastKey==40) { // Down - const newIndex = itemIndex+1; - let focusItem; - const item = document.getElementById('Item'+itemIndex); - const elem = this.FindChildElement(item.parentNode.parentNode.id); - if (elem && elem.style.display == 'block') { // children visible - focusItem = document.getElementById('Item'+itemIndex+'_c0'); - } - if (!focusItem) focusItem = this.NavNext(newIndex); - if (focusItem) focusItem.focus(); - } else if (this.lastKey==39) { // Right - const item = document.getElementById('Item'+itemIndex); - const elem = this.FindChildElement(item.parentNode.parentNode.id); - if (elem) elem.style.display = 'block'; - } else if (this.lastKey==37) { // Left - const item = document.getElementById('Item'+itemIndex); - const elem = this.FindChildElement(item.parentNode.parentNode.id); - if (elem) elem.style.display = 'none'; - } else if (this.lastKey==27) { // Escape - e.stopPropagation(); - searchBox.CloseResultsWindow(); - document.getElementById("MSearchField").focus(); - } else if (this.lastKey==13) { // Enter - return true; - } - return false; - } - - this.NavChild = function(evt,itemIndex,childIndex) { - const e = (evt) ? evt : window.event; // for IE - if (e.keyCode==13) return true; - if (!this.ProcessKeys(e)) return false; - - if (this.lastKey==38) { // Up - if (childIndex>0) { - const newIndex = childIndex-1; - document.getElementById('Item'+itemIndex+'_c'+newIndex).focus(); - } else { // already at first child, jump to parent - document.getElementById('Item'+itemIndex).focus(); - } - } else if (this.lastKey==40) { // Down - const newIndex = childIndex+1; - let elem = document.getElementById('Item'+itemIndex+'_c'+newIndex); - if (!elem) { // last child, jump to parent next parent - elem = this.NavNext(itemIndex+1); - } - if (elem) { - elem.focus(); - } - } else if (this.lastKey==27) { // Escape - e.stopPropagation(); - searchBox.CloseResultsWindow(); - document.getElementById("MSearchField").focus(); - } else if (this.lastKey==13) { // Enter - return true; - } - return false; - } -} - -function createResults(resultsPath) { - - function setKeyActions(elem,action) { - elem.setAttribute('onkeydown',action); - elem.setAttribute('onkeypress',action); - elem.setAttribute('onkeyup',action); - } - - function setClassAttr(elem,attr) { - elem.setAttribute('class',attr); - elem.setAttribute('className',attr); - } - - const results = document.getElementById("SRResults"); - results.innerHTML = ''; - searchData.forEach((elem,index) => { - const id = elem[0]; - const srResult = document.createElement('div'); - srResult.setAttribute('id','SR_'+id); - setClassAttr(srResult,'SRResult'); - const srEntry = document.createElement('div'); - setClassAttr(srEntry,'SREntry'); - const srLink = document.createElement('a'); - srLink.setAttribute('id','Item'+index); - setKeyActions(srLink,'return searchResults.Nav(event,'+index+')'); - setClassAttr(srLink,'SRSymbol'); - srLink.innerHTML = elem[1][0]; - srEntry.appendChild(srLink); - if (elem[1].length==2) { // single result - srLink.setAttribute('href',resultsPath+elem[1][1][0]); - srLink.setAttribute('onclick','searchBox.CloseResultsWindow()'); - if (elem[1][1][1]) { - srLink.setAttribute('target','_parent'); - } else { - srLink.setAttribute('target','_blank'); - } - const srScope = document.createElement('span'); - setClassAttr(srScope,'SRScope'); - srScope.innerHTML = elem[1][1][2]; - srEntry.appendChild(srScope); - } else { // multiple results - srLink.setAttribute('href','javascript:searchResults.Toggle("SR_'+id+'")'); - const srChildren = document.createElement('div'); - 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    Many-vs-many sketch comparison 1 -
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    Fast many-vs-many sketch comparison
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    utils.h
    -
    -
    -
    1#ifndef UTILS_H
    -
    2#define UTILS_H
    -
    3
    -
    4#include <iostream>
    -
    5#include <vector>
    -
    6#include <string>
    -
    7#include <fstream>
    -
    8#include <stdexcept>
    -
    9#include <thread>
    -
    10#include <mutex>
    -
    11#include <algorithm>
    -
    12#include <utility>
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    13#include <set>
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    14#include <map>
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    15#include <unordered_map>
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    16#include <unordered_set>
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    17#include <cmath>
    -
    18#include <limits>
    -
    19#include <iomanip>
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    20#include <sstream>
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    21#include <chrono>
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    22#include <random>
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    23
    -
    24#include "json.hpp"
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    25
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    26using json = nlohmann::json;
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    27
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    28typedef unsigned long long int hash_t;
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    29
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    37std::vector<hash_t> read_min_hashes(const std::string& sketch_path);
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    38
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    39
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    40
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    41
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    42
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    43
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    50void compute_index_from_sketches(std::vector<std::vector<hash_t>>& sketches, std::unordered_map<hash_t, std::vector<int>>& hash_index);
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    51
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    52
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    53
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    54
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    55
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    56
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    63void get_sketch_paths(const std::string& filelist, std::vector<std::string>& sketch_paths);
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    64
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    65
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    66
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    67
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    68
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    69
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    78void read_sketches(std::vector<std::string>& sketch_paths,
    -
    79 std::vector<std::vector<hash_t>>& sketches,
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    80 std::vector<int>& empty_sketch_ids,
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    81 const uint num_threads);
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    82
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    83
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    84
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    85
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    86
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    92void show_empty_sketches(const std::vector<int>&);
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    93
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    94
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    95
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    96
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    109void compute_intersection_matrix(const std::vector<std::vector<hash_t>>& sketches_query,
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    110 const std::vector<std::vector<hash_t>>& sketches_ref,
    -
    111 const std::unordered_map<hash_t, std::vector<int>>& hash_index_ref,
    -
    112 const std::string& out_dir,
    -
    113 std::vector<std::vector<int>>& similars,
    -
    114 double containment_threshold,
    -
    115 const int num_passes, const int num_threads);
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    116
    -
    117#endif
    -
    - -
    -Generated by doxygen 1.11.0 -
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{\gdef\SS@partnumberfont{\SS@sectid{0}\SS@nopart\SS@makeulinepartchap#1} - \gdef\SS@parttitlefont{\SS@sectid{0}\SS@titlepart\SS@makeulinepartchap#1}} -\newcommand*{\doxychapterfont} [1] - {\gdef\SS@chapnumfont{\SS@sectid{1}\SS@nopart\SS@makeulinepartchap#1} - \gdef\SS@chaptitlefont{\SS@sectid{1}\SS@titlepart\SS@makeulinepartchap#1}} -\newcommand*{\doxysectionfont} [1] - {\gdef\SS@sectfont{\SS@sectid{2}\SS@rr\SS@makeulinesect#1}} -\newcommand*{\doxysubsectionfont} [1] - {\gdef\SS@subsectfont{\SS@sectid{3}\SS@rr\SS@makeulinesect#1}} -\newcommand*{\doxysubsubsectionfont} [1] - {\gdef\SS@subsubsectfont{\SS@sectid{4}\SS@rr\SS@makeulinesect#1}} -\newcommand*{\doxyparagraphfont} [1] - {\gdef\SS@parafont{\SS@sectid{5}\SS@rr\SS@makeulinesect#1}} -\newcommand*{\doxysubparagraphfont} [1] - {\gdef\SS@subparafont{\SS@sectid{6}\SS@rr\SS@makeulinesect#1}} -\newcommand*{\doxyminisecfont} [1] - {\gdef\SS@minisecfont{\SS@sectid{7}\SS@rr\SS@makeulinepartchap#1}} -\newcommand*{\doxyallsectionsfont} [1] {\doxypartfont{#1}% - \doxychapterfont{#1}% - \doxysectionfont{#1}% - \doxysubsectionfont{#1}% - \doxysubsubsectionfont{#1}% - \doxyparagraphfont{#1}% - \doxysubparagraphfont{#1}% - \doxyminisecfont{#1}}% -% Define caption that is also suitable in a table -% for usage with hyperlinks -\makeatletter -\def\doxyfigcaption{% -\H@refstepcounter{figure}% -\@dblarg{\@caption{figure}}} - -% for usage without hyperlinks -\def\doxyfigcaptionnolink{% -\refstepcounter{figure}% -\@dblarg{\@caption{figure}}} -\makeatother - -% Define alpha enumarative names for counters > 26 -\makeatletter -\def\enumalphalphcnt#1{\expandafter\@enumalphalphcnt\csname c@#1\endcsname} -\def\@enumalphalphcnt#1{\alphalph{#1}} -\def\enumAlphAlphcnt#1{\expandafter\@enumAlphAlphcnt\csname c@#1\endcsname} -\def\@enumAlphAlphcnt#1{\AlphAlph{#1}} -\makeatother -\AddEnumerateCounter{\enumalphalphcnt}{\@enumalphalphcnt}{aa} -\AddEnumerateCounter{\enumAlphAlphcnt}{\@enumAlphAlphcnt}{AA} diff --git a/latex/etoc_doxygen.sty b/latex/etoc_doxygen.sty deleted file mode 100644 index 5f7e1274..00000000 --- a/latex/etoc_doxygen.sty +++ /dev/null @@ -1,2178 +0,0 @@ -%% -%% This is file etoc_doxygen.sty -%% -%% Apart from this header notice and the renaming from etoc to -%% etoc_doxygen (also in \ProvidesPackage) it is an identical -%% copy of -%% -%% etoc.sty -%% -%% at version 1.2b of 2023/07/01. -%% -%% This file has been provided to Doxygen team courtesy of the -%% author for benefit of users having a LaTeX installation not -%% yet providing version 1.2a or later of etoc, whose -%% deeplevels feature is required. -%% -%% The original source etoc.dtx (only of the latest version at -%% any given time) is available at -%% -%% https://ctan.org/pkg/etoc -%% -%% and contains the terms for copying and modification as well -%% as author contact information. -%% -%% In brief any modified versions of this file must be renamed -%% with new filenames distinct from etoc.sty. -%% -%% Package: etoc -%% Version: 1.2b -%% License: LPPL 1.3c -%% Copyright (C) 2012-2023 Jean-Francois B. -\NeedsTeXFormat{LaTeX2e}[2003/12/01] -\ProvidesPackage{etoc_doxygen}[2023/07/01 v1.2b Completely customisable TOCs (JFB)] -\newif\ifEtoc@oldLaTeX -\@ifl@t@r\fmtversion{2020/10/01} - {} - {\Etoc@oldLaTeXtrue - \PackageInfo{etoc}{Old LaTeX (\fmtversion) detected!\MessageBreak - Since 1.1a (2023/01/14), etoc prefers LaTeX at least\MessageBreak - as recent as 2020-10-01, for reasons of the .toc file,\MessageBreak - and used to require it (from 1.1a to 1.2).\MessageBreak - This etoc (1.2b) does not *require* it, but has not been\MessageBreak - tested thoroughly on old LaTeX (especially if document\MessageBreak - does not use hyperref) and retrofitting was done only\MessageBreak - on basis of author partial remembrances of old context.\MessageBreak - Reported}} -\RequirePackage{kvoptions} -\SetupKeyvalOptions{prefix=Etoc@} -\newif\ifEtoc@lof -\DeclareVoidOption{lof}{\Etoc@loftrue - \PackageInfo{etoc}{Experimental support for \string\locallistoffigures.\MessageBreak - Barely tested, use at own risk}% -} -\newif\ifEtoc@lot -\DeclareVoidOption{lot}{\Etoc@lottrue - \PackageInfo{etoc}{Experimental support for \string\locallistoftables.\MessageBreak - Barely tested, use at own risk}% -} -\@ifclassloaded{memoir}{ -\PackageInfo{etoc} - {As this is with memoir class, all `...totoc' options\MessageBreak - are set true by default. Reported} -\DeclareBoolOption[true]{maintoctotoc} -\DeclareBoolOption[true]{localtoctotoc} -\DeclareBoolOption[true]{localloftotoc} -\DeclareBoolOption[true]{locallottotoc} -}{ -\DeclareBoolOption[false]{maintoctotoc} -\DeclareBoolOption[false]{localtoctotoc} -\DeclareBoolOption[false]{localloftotoc} -\DeclareBoolOption[false]{locallottotoc} -} -\DeclareBoolOption[true]{ouroboros} -\DeclareBoolOption[false]{deeplevels} -\DeclareDefaultOption{\PackageWarning{etoc}{Option `\CurrentOption' is unknown.}} -\ProcessKeyvalOptions* -\DisableKeyvalOption[action=error,package=etoc]{etoc}{lof} -\DisableKeyvalOption[action=error,package=etoc]{etoc}{lot} -\DisableKeyvalOption[action=error,package=etoc]{etoc}{deeplevels} -\def\etocsetup#1{\setkeys{etoc}{#1}} -\def\etocifmaintoctotoc{\ifEtoc@maintoctotoc - \expandafter\@firstoftwo - \else - \expandafter\@secondoftwo - \fi} -\def\etociflocaltoctotoc{\ifEtoc@localtoctotoc - \expandafter\@firstoftwo - \else - \expandafter\@secondoftwo - \fi} -\def\etociflocalloftotoc{\ifEtoc@localloftotoc - \expandafter\@firstoftwo - \else - \expandafter\@secondoftwo - \fi} -\def\etociflocallottotoc{\ifEtoc@locallottotoc - \expandafter\@firstoftwo - \else - \expandafter\@secondoftwo - \fi} -\RequirePackage{multicol} -\def\etoc@{\etoc@} -\long\def\Etoc@gobtoetoc@ #1\etoc@{} -\newtoks\Etoc@toctoks -\def\Etoc@par{\par} -\def\etocinline{\def\Etoc@par{}} -\let\etocnopar\etocinline -\def\etocdisplay{\def\Etoc@par{\par}} -\let\Etoc@global\@empty -\def\etocglobaldefs{\let\Etoc@global\global\let\tof@global\global} -\def\etoclocaldefs {\let\Etoc@global\@empty\let\tof@global\@empty} -\newif\ifEtoc@numbered -\newif\ifEtoc@hyperref -\newif\ifEtoc@parskip -\newif\ifEtoc@tocwithid -\newif\ifEtoc@standardlines -\newif\ifEtoc@etocstyle -\newif\ifEtoc@classstyle -\newif\ifEtoc@keeporiginaltoc -\newif\ifEtoc@skipprefix -\newif\ifEtoc@isfirst -\newif\ifEtoc@localtoc -\newif\ifEtoc@skipthisone -\newif\ifEtoc@stoptoc -\newif\ifEtoc@notactive -\newif\ifEtoc@mustclosegroup -\newif\ifEtoc@isemptytoc -\newif\ifEtoc@checksemptiness -\def\etocchecksemptiness {\Etoc@checksemptinesstrue } -\def\etocdoesnotcheckemptiness {\Etoc@checksemptinessfalse } -\newif\ifEtoc@notocifnotoc -\def\etocnotocifnotoc {\Etoc@checksemptinesstrue\Etoc@notocifnotoctrue } -\newcounter{etoc@tocid} -\def\Etoc@tocext{toc} -\def\Etoc@lofext{lof} -\def\Etoc@lotext{lot} -\let\Etoc@currext\Etoc@tocext -\def\etocifislocal{\ifEtoc@localtoc\expandafter\@firstoftwo\else - \expandafter\@secondoftwo\fi - } -\def\etocifislocaltoc{\etocifislocal{\ifx\Etoc@currext\Etoc@tocext - \expandafter\@firstoftwo\else - \expandafter\@secondoftwo\fi}% - {\@secondoftwo}% - } -\def\etocifislocallof{\etocifislocal{\ifx\Etoc@currext\Etoc@lofext - \expandafter\@firstoftwo\else - \expandafter\@secondoftwo\fi}% - {\@secondoftwo}% - } -\def\etocifislocallot{\etocifislocal{\ifx\Etoc@currext\Etoc@lotext - \expandafter\@firstoftwo\else - \expandafter\@secondoftwo\fi}% - {\@secondoftwo}% - } -\expandafter\def\csname Etoc@-3@@\endcsname {-\thr@@} -\expandafter\def\csname Etoc@-2@@\endcsname {-\tw@} -\expandafter\let\csname Etoc@-1@@\endcsname \m@ne -\expandafter\let\csname Etoc@0@@\endcsname \z@ -\expandafter\let\csname Etoc@1@@\endcsname \@ne -\expandafter\let\csname Etoc@2@@\endcsname \tw@ -\expandafter\let\csname Etoc@3@@\endcsname \thr@@ -\expandafter\chardef\csname Etoc@4@@\endcsname 4 -\expandafter\chardef\csname Etoc@5@@\endcsname 5 -\expandafter\chardef\csname Etoc@6@@\endcsname 6 -\ifEtoc@deeplevels - \expandafter\chardef\csname Etoc@7@@\endcsname 7 - \expandafter\chardef\csname Etoc@8@@\endcsname 8 - \expandafter\chardef\csname Etoc@9@@\endcsname 9 - \expandafter\chardef\csname Etoc@10@@\endcsname 10 - \expandafter\chardef\csname Etoc@11@@\endcsname 11 - \expandafter\chardef\csname Etoc@12@@\endcsname 12 -\fi -\expandafter\let\expandafter\Etoc@maxlevel - \csname Etoc@\ifEtoc@deeplevels12\else6\fi @@\endcsname -\edef\etocthemaxlevel{\number\Etoc@maxlevel} -\@ifclassloaded{memoir}{\def\Etoc@minf{-\thr@@}}{\def\Etoc@minf{-\tw@}} -\let\Etoc@none@@ \Etoc@minf -\expandafter\let\expandafter\Etoc@all@@ - \csname Etoc@\ifEtoc@deeplevels11\else5\fi @@\endcsname -\let\Etoc@dolevels\@empty -\def\Etoc@newlevel #1{\expandafter\def\expandafter\Etoc@dolevels\expandafter - {\Etoc@dolevels\Etoc@do{#1}}} -\ifdefined\expanded - \def\etocsetlevel#1#2{\expanded{\noexpand\etoc@setlevel{#1}{#2}}}% -\else - \def\etocsetlevel#1#2{{\edef\Etoc@tmp{\noexpand\etoc@setlevel{#1}{#2}}\expandafter}\Etoc@tmp}% -\fi -\def\etoc@setlevel#1#2{% - \edef\Etoc@tmp{\the\numexpr#2}% - \if1\ifnum\Etoc@tmp>\Etoc@maxlevel0\fi\unless\ifnum\Etoc@minf<\Etoc@tmp;\fi1% - \ifEtoc@deeplevels - \in@{.#1,}{.none,.all,.figure,.table,.-3,.-2,.-1,.0,.1,.2,.3,.4,.5,.6,% - .7,.8,.9,.10,.11,.12,}% - \else - \in@{.#1,}{.none,.all,.figure,.table,.-3,.-2,.-1,.0,.1,.2,.3,.4,.5,.6,}% - \fi - \ifin@\else\if\@car#1\@nil @\in@true\fi\fi - \ifin@ - \PackageWarning{etoc} - {Sorry, but `#1' is forbidden as level name.\MessageBreak - \if\@car#1\@nil @% - (because of the @ as first character)\MessageBreak\fi - Reported}% - \else - \etocifunknownlevelTF{#1}{\Etoc@newlevel{#1}}{}% - \expandafter\let\csname Etoc@#1@@\expandafter\endcsname - \csname Etoc@\Etoc@tmp @@\endcsname - \expandafter\edef\csname Etoc@@#1@@\endcsname - {\expandafter\noexpand\csname Etoc@#1@@\endcsname}% - \expandafter\edef\csname toclevel@@#1\endcsname - {\expandafter\noexpand\csname toclevel@#1\endcsname}% - \fi - \else - \PackageWarning{etoc} - {Argument `\detokenize{#2}' of \string\etocsetlevel\space should - represent one of\MessageBreak - \ifnum\Etoc@minf=-\thr@@-2, \fi-1, 0, 1, 2, \ifEtoc@deeplevels ...\else3, 4\fi, - \the\numexpr\Etoc@maxlevel-1, or \number\Etoc@maxlevel\space - but evaluates to \Etoc@tmp.\MessageBreak - The level of `#1' will be set to \number\Etoc@maxlevel.\MessageBreak - Tables of contents will ignore `#1' as long\MessageBreak - as its level is \number\Etoc@maxlevel\space (=\string\etocthemaxlevel).% - \MessageBreak - Reported}% - \etocifunknownlevelTF{#1}{\Etoc@newlevel{#1}}{}% - \expandafter\let\csname Etoc@#1@@\endcsname\Etoc@maxlevel - \fi -} -\def\etoclevel#1{\csname Etoc@#1@@\endcsname} -\def\etocthelevel#1{\number\csname Etoc@#1@@\endcsname} -\def\etocifunknownlevelTF#1{\@ifundefined{Etoc@#1@@}} -\@ifclassloaded{memoir}{\etocsetlevel{book}{-2}}{} -\etocsetlevel{part}{-1} -\etocsetlevel{chapter}{0} -\etocsetlevel{section}{1} -\etocsetlevel{subsection}{2} -\etocsetlevel{subsubsection}{3} -\etocsetlevel{paragraph}{4} -\etocsetlevel{subparagraph}{5} -\ifdefined\c@chapter - \etocsetlevel{appendix}{0} -\else - \etocsetlevel{appendix}{1} -\fi -\def\Etoc@do#1{\@namedef{l@@#1}{\csname l@#1\endcsname}} -\Etoc@dolevels -\let\Etoc@figure@@\Etoc@maxlevel -\let\Etoc@table@@ \Etoc@maxlevel -\let\Etoc@gobblethreeorfour\@gobblefour -\ifdefined\@gobblethree - \let\Etoc@gobblethree\@gobblethree -\else - \long\def\Etoc@gobblethree#1#2#3{}% -\fi -\AtBeginDocument{% -\@ifpackageloaded{parskip}{\Etoc@parskiptrue}{}% -\@ifpackageloaded{hyperref} - {\Etoc@hyperreftrue} - {\ifEtoc@oldLaTeX - \let\Etoc@gobblethreeorfour\Etoc@gobblethree - \let\Etoc@etoccontentsline@fourargs\Etoc@etoccontentsline@ - \long\def\Etoc@etoccontentsline@#1#2#3{% - \Etoc@etoccontentsline@fourargs{#1}{#2}{#3}{}% - }% - \fi - }% -} -\def\etocskipfirstprefix {\global\Etoc@skipprefixtrue } -\def\Etoc@updatestackofends#1\etoc@{\gdef\Etoc@stackofends{#1}} -\def\Etoc@stackofends{{-3}{}} -\def\Etoc@doendsandbegin{% - \expandafter\Etoc@traversestackofends\Etoc@stackofends\etoc@ -} -\def\Etoc@traversestackofends#1{% - \ifnum#1>\Etoc@level - \csname Etoc@end@#1\endcsname - \expandafter\Etoc@traversestackofends - \else - \Etoc@traversestackofends@done{#1}% - \fi -} -\def\Etoc@traversestackofends@done#1#2{#2% - \ifnum#1<\Etoc@level - \csname Etoc@begin@\the\numexpr\Etoc@level\endcsname - \Etoc@global\Etoc@isfirsttrue - \edef\Etoc@tmp{{\the\numexpr\Etoc@level}}% - \else - \Etoc@global\Etoc@isfirstfalse - \let\Etoc@tmp\@empty - \fi - \expandafter\Etoc@updatestackofends\Etoc@tmp{#1}% -} -\def\Etoc@etoccontentsline #1{% - \let\Etoc@next\Etoc@gobblethreeorfour - \ifnum\csname Etoc@#1@@\endcsname=\Etoc@maxlevel - \else - \Etoc@skipthisonefalse - \global\expandafter\let\expandafter\Etoc@level\csname Etoc@#1@@\endcsname - \if @\@car#1\@nil\else\global\let\Etoc@virtualtop\Etoc@level\fi - \ifEtoc@localtoc - \ifEtoc@stoptoc - \Etoc@skipthisonetrue - \else - \ifEtoc@notactive - \Etoc@skipthisonetrue - \else - \unless\ifnum\Etoc@level>\etoclocaltop - \Etoc@skipthisonetrue - \global\Etoc@stoptoctrue - \fi - \fi - \fi - \fi - \ifEtoc@skipthisone - \else - \unless\ifnum\Etoc@level>\c@tocdepth - \ifEtoc@standardlines - \let\Etoc@next\Etoc@savedcontentsline - \else - \let\Etoc@next\Etoc@etoccontentsline@ - \fi - \fi - \fi - \fi - \Etoc@next{#1}% -} -\def\Etoc@etoccontentsline@ #1#2#3#4{% - \Etoc@doendsandbegin - \Etoc@global\edef\Etoc@prefix {\expandafter\noexpand - \csname Etoc@prefix@\the\numexpr\Etoc@level\endcsname }% - \Etoc@global\edef\Etoc@contents{\expandafter\noexpand - \csname Etoc@contents@\the\numexpr\Etoc@level\endcsname }% - \ifEtoc@skipprefix \Etoc@global\def\Etoc@prefix{\@empty}\fi - \global\Etoc@skipprefixfalse - \Etoc@lxyz{#2}{#3}{#4}% - \Etoc@prefix - \Etoc@contents -} -\def\Etoc@lxyz #1#2#3{% - \ifEtoc@hyperref - \Etoc@global\def\etocthelink##1{\hyperlink{#3}{##1}}% - \else - \Etoc@global\let\etocthelink\@firstofone - \fi - \Etoc@global\def\etocthepage {#2}% - \ifEtoc@hyperref - \ifx\etocthepage\@empty - \Etoc@global\let\etocthelinkedpage\@empty - \else - \Etoc@global\def\etocthelinkedpage{\hyperlink {#3}{#2}}% - \fi - \else - \Etoc@global\let\etocthelinkedpage\etocthepage - \fi - \Etoc@global\def\etocthename{#1}% - \futurelet\Etoc@getnb@token\Etoc@@getnb #1\hspace\etoc@ - \ifEtoc@hyperref - \def\Etoc@tmp##1##2{\Etoc@global\def##2{\hyperlink{#3}{##1}}}% - \expandafter\Etoc@tmp\expandafter{\etocthename}\etocthelinkedname - \ifEtoc@numbered - \expandafter\Etoc@tmp\expandafter{\etocthenumber}\etocthelinkednumber - \else - \Etoc@global\let\etocthelinkednumber\@empty - \fi - \else - \Etoc@global\let\etocthelinkedname \etocthename - \Etoc@global\let\etocthelinkednumber\etocthenumber - \fi - \Etoc@global\expandafter\let\csname etoclink \endcsname \etocthelink - \Etoc@global\expandafter\let\csname etocname \endcsname \etocthename - \Etoc@global\expandafter\let\csname etocnumber \endcsname\etocthenumber - \Etoc@global\expandafter\let\csname etocpage \endcsname \etocthepage - \ifEtoc@hyperref - \Etoc@lxyz@linktoc - \fi -} -\def\Etoc@lxyz@linktoc{% - \ifcase\Hy@linktoc - \or - \Etoc@global\expandafter\let\csname etocname \endcsname\etocthelinkedname - \Etoc@global\expandafter\let\csname etocnumber \endcsname\etocthelinkednumber - \or % page - \Etoc@global\expandafter\let\csname etocpage \endcsname\etocthelinkedpage - \else % all - \Etoc@global\expandafter\let\csname etocname \endcsname\etocthelinkedname - \Etoc@global\expandafter\let\csname etocnumber \endcsname\etocthelinkednumber - \Etoc@global\expandafter\let\csname etocpage \endcsname\etocthelinkedpage - \fi -} -\def\Etoc@@getnb {% - \let\Etoc@next\Etoc@getnb - \ifx\Etoc@getnb@token\@sptoken\let\Etoc@next\Etoc@getnb@nonbr\fi - \ifx\Etoc@getnb@token\bgroup \let\Etoc@next\Etoc@getnb@nonbr\fi - \Etoc@next -} -\def\Etoc@getnb #1{% - \in@{#1}{\numberline\chapternumberline\partnumberline\booknumberline}% - \ifin@ - \let\Etoc@next\Etoc@getnb@nmbrd - \else - \ifnum\Etoc@level=\m@ne - \let\Etoc@next\Etoc@@getit - \else - \let\Etoc@next\Etoc@getnb@nonbr - \fi - \in@{#1}{\nonumberline}% - \ifin@ - \let\Etoc@next\Etoc@getnb@nonumberline - \fi - \fi - \Etoc@next #1% -} -\def\Etoc@getnb@nmbrd #1#2{% - \Etoc@global\Etoc@numberedtrue - \Etoc@global\def\etocthenumber {#2}% - \Etoc@getnb@nmbrd@getname\@empty -}% -\def\Etoc@getnb@nmbrd@getname #1\hspace\etoc@ {% - \Etoc@global\expandafter\def\expandafter\etocthename\expandafter{#1}% -} -\def\Etoc@getnb@nonbr #1\etoc@ {% - \Etoc@global\Etoc@numberedfalse - \Etoc@global\let\etocthenumber \@empty -} -\def\Etoc@getnb@nonumberline #1\hspace\etoc@ {% - \Etoc@global\Etoc@numberedfalse - \Etoc@global\let\etocthenumber \@empty - \Etoc@global\expandafter\def\expandafter\etocthename\expandafter{\@gobble#1}% -} -\def\Etoc@@getit #1\hspace#2{% - \ifx\etoc@#2% - \Etoc@global\Etoc@numberedfalse - \Etoc@global\let\etocthenumber \@empty - \else - \Etoc@global\Etoc@numberedtrue - \Etoc@global\def\etocthenumber {#1}% - \expandafter\Etoc@getit@getname \expandafter\@empty - \fi -} -\def\Etoc@getit@getname #1\hspace\etoc@ {% - \Etoc@global\expandafter\def\expandafter\etocthename\expandafter{#1}% -} -\let\etocthename \@empty -\let\etocthenumber \@empty -\let\etocthepage \@empty -\let\etocthelinkedname \@empty -\let\etocthelinkednumber \@empty -\let\etocthelinkedpage \@empty -\let\etocthelink \@firstofone -\DeclareRobustCommand*{\etocname} {} -\DeclareRobustCommand*{\etocnumber}{} -\DeclareRobustCommand*{\etocpage} {} -\DeclareRobustCommand*{\etoclink} {\@firstofone} -\DeclareRobustCommand*{\etocifnumbered} - {\ifEtoc@numbered\expandafter\@firstoftwo\else\expandafter\@secondoftwo\fi} -\expandafter\let\expandafter\etocxifnumbered\csname etocifnumbered \endcsname -\DeclareRobustCommand*{\etociffirst} - {\ifEtoc@isfirst\expandafter\@firstoftwo\else\expandafter\@secondoftwo\fi} -\expandafter\let\expandafter\etocxiffirst\csname etociffirst \endcsname -\def\Etoc@readtoc {% - \ifeof \Etoc@tf - \else - \read \Etoc@tf to \Etoc@buffer - \Etoc@toctoks=\expandafter\expandafter\expandafter - {\expandafter\the\expandafter\Etoc@toctoks\Etoc@buffer}% - \expandafter\Etoc@readtoc - \fi -} -\Etoc@toctoks {}% (superfluous, but for clarity) -\AtBeginDocument{\IfFileExists{\jobname.toc} - {{\endlinechar=\m@ne - \makeatletter - \newread\Etoc@tf - \openin\Etoc@tf\@filef@und - \Etoc@readtoc - \global\Etoc@toctoks=\expandafter{\the\Etoc@toctoks}% - \closein\Etoc@tf}} - {\typeout{No file \jobname.toc.}}} -\def\Etoc@openouttoc{% - \ifEtoc@hyperref - \ifx\hyper@last\@undefined - \IfFileExists{\jobname .toc} - {\Hy@WarningNoLine - {old toc file detected; run LaTeX again (cheers from `etoc')}% - \global\Etoc@toctoks={}% - } - {}% - \fi - \fi - \if@filesw - \newwrite \tf@toc - \immediate \openout \tf@toc \jobname .toc\relax - \fi - \global\let\Etoc@openouttoc\empty -} -\def\Etoc@toctoc{% - \gdef\Etoc@stackofends{{-3}{}}% - \global\let\Etoc@level\Etoc@minf - \global\let\Etoc@virtualtop\Etoc@minf - \the\Etoc@toctoks - \ifEtoc@notactive - \else - \gdef\Etoc@level{-\thr@@}% - \Etoc@doendsandbegin - \fi -} -\def\Etoc@@startlocaltoc#1#2{% - \ifEtoc@localtoc - \ifnum #1=#2\relax - \global\let\etoclocaltop\Etoc@virtualtop - \Etoc@@startlocaltochook - \etoclocaltableofcontentshook - \ifEtoc@etocstyle - \etocetoclocaltocmaketitle - \fi - \ifx\Etoc@aftertitlehook\@empty - \else - \ifEtoc@localtoctotoc - \ifEtoc@ouroboros - \else - \let\Etoc@tmp\contentsline - \def\contentsline{\let\contentsline\Etoc@tmp\Etoc@gobblethreeorfour}% - \fi - \fi - \fi - \global\Etoc@notactivefalse - \fi - \fi -} -\let\etoc@startlocaltoc\@gobble -\let\Etoc@@startlocaltoc@toc\Etoc@@startlocaltoc -\let\Etoc@@startlocaltochook\@empty -\unless\ifEtoc@deeplevels - \def\etocdivisionnameatlevel#1{% - \ifcase\numexpr#1\relax - \ifdefined\c@chapter chapter\else section\fi% - \or section% - \or subsection% - \or subsubsection% - \or paragraph% - \or subparagraph% - \or empty% - \else\ifnum\numexpr#1<\m@ne - book% - \else - part% - \fi - \fi - } -\else - \def\etocdivisionnameatlevel#1{% - \ifcase\numexpr#1\relax - \ifdefined\c@chapter chapter\else section\fi% - \or section% - \or subsection% - \or subsubsection% - \or subsubsubsection% - \or subsubsubsubsection% - \or subsubsubsubsubsection% - \or subsubsubsubsubsubsection% - \or paragraph% - \or subparagraph% - \else\ifnum\numexpr#1>\z@ - empty% - \else\ifnum\numexpr#1=\m@ne - part% - \else - book% - \fi\fi - \fi - } -\fi -\def\etoclocalheadtotoc#1#2{\addcontentsline{toc}{@#1}{#2}} -\def\etocglobalheadtotoc{\addcontentsline{toc}} -\providecommand*\UseName{\@nameuse} -\def\etocetoclocaltocmaketitle{% - \UseName{\etocdivisionnameatlevel{\etoclocaltop+1}}*{\localcontentsname}% - \if@noskipsec\leavevmode\par\fi - \etociflocaltoctotoc - {\etocifisstarred - {}% star variant, do not add to toc - {\etoclocalheadtotoc - {\etocdivisionnameatlevel{\etoclocaltop+1}}% - {\localcontentsname}% - }% - }% - {}% -}% -\def\localcontentsname {\contentsname}% -\let\etoclocaltableofcontentshook\@empty -\if1\ifEtoc@lof0\fi\ifEtoc@lot0\fi1% -\else -\AtBeginDocument{% - \let\Etoc@originaladdcontentsline\addcontentsline - \def\addcontentsline{\Etoc@hackedaddcontentsline}% -}% -\fi -\ifEtoc@lof - \ifEtoc@lot - \def\Etoc@hackedaddcontentsline#1{% - \expanded{\noexpand\in@{.#1,}}{.lof,.lot,}% - \ifin@\expandafter\Etoc@hackedaddcontentsline@i - \else\expandafter\Etoc@originaladdcontentsline - \fi {#1}} - \else - \def\Etoc@hackedaddcontentsline#1{% - \expanded{\noexpand\in@{.#1,}}{.lof,}% - \ifin@\expandafter\Etoc@hackedaddcontentsline@i - \else\expandafter\Etoc@originaladdcontentsline - \fi {#1}} - \fi -\else - \def\Etoc@hackedaddcontentsline#1{% - \expanded{\noexpand\in@{.#1,}}{.lot,}% - \ifin@\expandafter\Etoc@hackedaddcontentsline@i - \else\expandafter\Etoc@originaladdcontentsline - \fi {#1}} -\fi -\def\Etoc@hackedaddcontentsline@i#1#2#3{% - \expanded{\noexpand\in@{.#1;#2,}}{.lof;figure,.lot;table,}% - \ifin@ - \addtocontents {toc}{% - \protect\contentsline{#2}{#3}{\thepage}{\ifEtoc@hyperref\@currentHref\fi}% - \ifdefined\protected@file@percent\protected@file@percent\fi - }% - \fi - \Etoc@originaladdcontentsline{#1}{#2}{#3}% -} -\unless\ifdefined\expanded - \def\Etoc@hackedaddcontentsline#1{% - {\edef\Etoc@tmp{\noexpand\in@{.#1,}{\ifEtoc@lof.lof,\fi\ifEtoc@lot.lot,\fi}}\expandafter}% - \Etoc@tmp - \ifin@\expandafter\Etoc@hackedaddcontentsline@i - \else\expandafter\Etoc@originaladdcontentsline - \fi {#1}% - } - \def\Etoc@hackedaddcontentsline@i#1#2#3{% - {\edef\Etoc@tmp{\noexpand\in@{.#1;#2,}}\expandafter}% - \Etoc@tmp{.lof;figure,.lot;table,}% - \ifin@ - \addtocontents {toc}{% - \protect\contentsline{#2}{#3}{\thepage}{\ifEtoc@hyperref\@currentHref\fi}% - \ifdefined\protected@file@percent\protected@file@percent\fi - }% - \fi - \Etoc@originaladdcontentsline{#1}{#2}{#3}% - } -\fi -\def\Etoc@@startlocallistof#1#2#3{% - \ifEtoc@localtoc - \ifnum #2=#3\relax - \global\let\etoclocaltop\Etoc@virtualtop - \global\Etoc@notactivefalse - \Etoc@@startlocaltochook - \csname etoclocallistof#1shook\endcsname - \ifEtoc@etocstyle - \csname etocetoclistof#1smaketitle\endcsname - \fi - \fi - \fi -} -\def\Etoc@@startlocallistof@setlevels#1{% - \ifnum\etoclocaltop<\z@ - \expandafter\let\csname Etoc@#1@@\endcsname\@ne - \else - \expandafter\let\csname Etoc@#1@@\expandafter\endcsname - \csname Etoc@\the\numexpr\etoclocaltop+\@ne @@\endcsname - \fi - \def\Etoc@do##1{% - \ifnum\etoclevel{##1}>\etoclocaltop - \expandafter\let\csname Etoc@##1@@\endcsname\Etoc@maxlevel - \fi}% - \Etoc@dolevels -} -\def\etoclocallistoffigureshook{\etocstandardlines} -\def\etoclocallistoftableshook {\etocstandardlines} -\def\locallistfigurename{\listfigurename} -\def\locallisttablename {\listtablename} -\def\etocetoclistoffiguresmaketitle{% - \UseName{\etocdivisionnameatlevel{\etoclocaltop+1}}*{\locallistfigurename}% - \ifnum\etoclocaltop>\tw@\mbox{}\par\fi - \etociflocalloftotoc - {\etocifisstarred - {}% star variant, do not add to toc - {\etoclocalheadtotoc - {\etocdivisionnameatlevel{\etoclocaltop+1}}% - {\locallistfigurename}% - }% - }% - {}% -}% -\def\etocetoclistoftablesmaketitle{% - \UseName{\etocdivisionnameatlevel{\etoclocaltop+1}}*{\locallisttablename}% - \ifnum\etoclocaltop>\tw@\mbox{}\par\fi - \etociflocallottotoc - {\etocifisstarred - {}% star variant, do not add to toc - {\etoclocalheadtotoc - {\etocdivisionnameatlevel{\etoclocaltop+1}}% - {\locallisttablename}% - }% - }% - {}% -}% -\let\Etoc@listofreset\@empty -\ifEtoc@lof - \def\locallistoffigures{% - \def\Etoc@listofreset{% - \let\Etoc@currext\Etoc@tocext - \let\Etoc@@startlocaltoc\Etoc@@startlocaltoc@toc - \let\Etoc@@startlocaltochook\@empty - \let\Etoc@listofreset\@empty - \let\Etoc@listofhook\@empty - }% - \let\Etoc@currext\Etoc@lofext - \def\Etoc@@startlocaltoc{\Etoc@@startlocallistof{figure}}% - \def\Etoc@@startlocaltochook{\Etoc@@startlocallistof@setlevels{figure}}% - \def\Etoc@listofhook{% - \def\Etoc@do####1{% - \expandafter\let\csname Etoc@@####1@@\endcsname\Etoc@maxlevel - }% - \Etoc@dolevels - }% - \localtableofcontents - } -\else - \def\locallistoffigures{% - \PackageError{etoc}{% - \string\locallistoffigures \on@line\space but\MessageBreak - package was loaded without `lof' option}% - {Try again with \string\usepackage[lof]{etoc}}% - } -\fi -\ifEtoc@lot - \def\locallistoftables{% - \def\Etoc@listofreset{% - \let\Etoc@currext\Etoc@tocext - \let\Etoc@@startlocaltoc\Etoc@@startlocaltoc@toc - \let\Etoc@@startlocaltochook\@empty - \let\Etoc@listofreset\@empty - \let\Etoc@listofhook\@empty - }% - \let\Etoc@currext\Etoc@lotext - \def\Etoc@@startlocaltoc{\Etoc@@startlocallistof{table}}% - \def\Etoc@@startlocaltochook{\Etoc@@startlocallistof@setlevels{table}}% - \def\Etoc@listofhook{% - \def\Etoc@do####1{% - \expandafter\let\csname Etoc@@####1@@\endcsname\Etoc@maxlevel - }% - \Etoc@dolevels - }% - \localtableofcontents - } -\else - \def\locallistoftables{% - \PackageError{etoc}{% - \string\locallistoftable \on@line\space but\MessageBreak - package was loaded without `lot' option}% - {Try again with \string\usepackage[lot]{etoc}}% - } -\fi -\def\Etoc@checkifempty {% - \global\Etoc@isemptytoctrue - \global\Etoc@stoptocfalse - \global\let\Etoc@level\Etoc@minf - \global\let\Etoc@virtualtop\Etoc@minf - \gdef\Etoc@stackofends{{-3}{}}% - \begingroup - \ifEtoc@localtoc - \def\etoc@startlocaltoc##1{% - \ifnum##1=\Etoc@tocid\relax - \global\let\etoclocaltop\Etoc@virtualtop - \Etoc@@startlocaltochook - \global\Etoc@notactivefalse - \fi - }% - \let\contentsline\Etoc@testingcontentslinelocal - \else - \let\contentsline\Etoc@testingcontentsline - \fi - \Etoc@storetocdepth - \let\Etoc@setlocaltop@doendsandbegin\@empty - \the\Etoc@toctoks - \Etoc@restoretocdepth - \endgroup -} -\DeclareRobustCommand*\etocifwasempty - {\ifEtoc@isemptytoc\expandafter\@firstoftwo\else\expandafter\@secondoftwo\fi } -\expandafter\let\expandafter\etocxifwasempty\csname etocifwasempty \endcsname -\def\Etoc@testingcontentslinelocal #1{% - \ifEtoc@stoptoc - \else - \ifnum\csname Etoc@#1@@\endcsname=\Etoc@maxlevel - \else - \global\expandafter\let\expandafter\Etoc@level\csname Etoc@#1@@\endcsname - \if @\@car#1\@nil\else\global\let\Etoc@virtualtop\Etoc@level\fi - \ifEtoc@notactive - \else - \ifnum\Etoc@level>\etoclocaltop - \unless\ifnum\Etoc@level>\c@tocdepth - \global\Etoc@isemptytocfalse - \global\Etoc@stoptoctrue - \fi - \else - \global\Etoc@stoptoctrue - \fi - \fi - \fi - \fi - \Etoc@gobblethreeorfour{}% -} -\def\Etoc@testingcontentsline #1{% - \ifEtoc@stoptoc - \else - \ifnum\csname Etoc@#1@@\endcsname=\Etoc@maxlevel - \else - \unless\ifnum\csname Etoc@#1@@\endcsname>\c@tocdepth - \global\Etoc@isemptytocfalse - \global\Etoc@stoptoctrue - \fi - \fi - \fi - \Etoc@gobblethreeorfour{}% -} -\def\Etoc@localtableofcontents#1{% - \gdef\etoclocaltop{-\@m}% - \Etoc@localtoctrue - \global\Etoc@isemptytocfalse - \edef\Etoc@tocid{#1}% - \ifnum\Etoc@tocid<\@ne - \setbox0\hbox{\ref{Unknown toc ref \@secondoftwo#1. \space Rerun LaTeX}}% - \global\Etoc@stoptoctrue - \gdef\etoclocaltop{-\thr@@}% - \Etoc@tableofcontents - \expandafter\Etoc@gobtoetoc@ - \fi - \global\Etoc@notactivetrue - \ifEtoc@checksemptiness - \Etoc@checkifempty - \fi - \ifEtoc@isemptytoc - \ifEtoc@notactive - \setbox0\hbox{\ref{Unknown toc ID \number\Etoc@tocid. \space Rerun LaTeX}}% - \global\Etoc@isemptytocfalse - \global\Etoc@stoptoctrue - \gdef\etoclocaltop{-\thr@@}% - \Etoc@tableofcontents - \expandafter\expandafter\expandafter\Etoc@gobtoetoc@ - \fi - \else - \global\Etoc@stoptocfalse - \global\Etoc@notactivetrue - \edef\etoc@startlocaltoc##1% - {\noexpand\Etoc@@startlocaltoc{##1}{\Etoc@tocid}}% - \Etoc@tableofcontents - \fi - \@gobble\etoc@ - \endgroup\ifEtoc@mustclosegroup\endgroup\fi - \Etoc@tocdepthreset - \Etoc@listofreset - \etocaftertochook -}% \Etoc@localtableofcontents -\def\Etoc@getref #1{% - \@ifundefined{r@#1} - {0} - {\expandafter\Etoc@getref@i\romannumeral-`0% - \expandafter\expandafter\expandafter - \@car\csname r@#1\endcsname0\@nil\@etoc - }% -} -\def\Etoc@getref@i#1#2\@etoc{\ifnum9<1\string#1 #1#2\else 0\fi} -\def\Etoc@ref#1{\Etoc@localtableofcontents{\Etoc@getref{#1}}} -\def\Etoc@label#1{\label{#1}\futurelet\Etoc@nexttoken\Etoc@t@bleofcontents} -\@firstofone{\def\Etoc@again} {\futurelet\Etoc@nexttoken\Etoc@t@bleofcontents} -\def\Etoc@dothis #1#2\etoc@ {\fi #1} -\def\Etoc@t@bleofcontents{% - \gdef\etoclocaltop{-\@M}% - \ifx\Etoc@nexttoken\label\Etoc@dothis{\expandafter\Etoc@label\@gobble}\fi - \ifx\Etoc@nexttoken\@sptoken\Etoc@dothis{\Etoc@again}\fi - \ifx\Etoc@nexttoken\ref\Etoc@dothis{\expandafter\Etoc@ref\@gobble}\fi - \ifEtoc@tocwithid\Etoc@dothis{\Etoc@localtableofcontents{\c@etoc@tocid}}\fi - \global\Etoc@isemptytocfalse - \ifEtoc@checksemptiness\Etoc@checkifempty\fi - \ifEtoc@isemptytoc - \ifEtoc@notocifnotoc - \expandafter\expandafter\expandafter\@gobble - \fi - \fi - \Etoc@tableofcontents - \endgroup - \ifEtoc@mustclosegroup\endgroup\fi - \Etoc@tocdepthreset - \Etoc@listofreset - \etocaftertochook - \@gobble\etoc@ - }% \Etoc@t@bleofcontents -\def\Etoc@table@fcontents{% - \refstepcounter{etoc@tocid}% - \Etoc@tocwithidfalse - \futurelet\Etoc@nexttoken\Etoc@t@bleofcontents -} -\def\Etoc@localtable@fcontents{% - \refstepcounter{etoc@tocid}% - \addtocontents{toc}{\string\etoc@startlocaltoc{\the\c@etoc@tocid}}% - \Etoc@tocwithidtrue - \futurelet\Etoc@nexttoken\Etoc@t@bleofcontents -} -\def\etoctableofcontents{% - \Etoc@openouttoc - \Etoc@tocdepthset - \begingroup - \@ifstar - {\let\Etoc@aftertitlehook\@empty\Etoc@table@fcontents} - {\def\Etoc@aftertitlehook{\etocaftertitlehook}\Etoc@table@fcontents}% -}% \etoctableofcontents -\def\etocifisstarred{\ifx\Etoc@aftertitlehook\@empty - \expandafter\@firstoftwo\else - \expandafter\@secondoftwo - \fi} -\let\etocoriginaltableofcontents\tableofcontents -\let\tableofcontents\etoctableofcontents -\let\Etoc@listofhook\@empty -\newcommand*\localtableofcontents{% - \Etoc@openouttoc - \Etoc@tocdepthset - \begingroup - \Etoc@listofhook - \@ifstar - {\let\Etoc@aftertitlehook\@empty\Etoc@localtable@fcontents} - {\def\Etoc@aftertitlehook{\etocaftertitlehook}\Etoc@localtable@fcontents}% -}% \localtableofcontents -\newcommand*\localtableofcontentswithrelativedepth[1]{% - \def\Etoc@@startlocaltochook{% - \global\c@tocdepth\numexpr\etoclocaltop+#1\relax - }% - \def\Etoc@listofreset{\let\Etoc@@startlocaltochook\@empty - \let\Etoc@listofreset\@empty}% - \localtableofcontents -}% \localtableofcontentswithrelativedepth -\newcommand\etocsettocstyle[2]{% - \Etoc@etocstylefalse - \Etoc@classstylefalse - \def\Etoc@tableofcontents@user@before{#1}% - \def\Etoc@tableofcontents@user@after {#2}% -}% -\def\etocstoretocstyleinto#1{% -%% \@ifdefinable#1{% - \edef#1{\noexpand\Etoc@etocstylefalse\noexpand\Etoc@classstylefalse - \def\noexpand\Etoc@tableofcontents@user@before{% - \unexpanded\expandafter{\Etoc@tableofcontents@user@before}% - }% - \def\noexpand\Etoc@tableofcontents@user@after{% - \unexpanded\expandafter{\Etoc@tableofcontents@user@after}% - }% - }% -%% }% -}% -\def\Etoc@tableofcontents {% - \Etoc@tableofcontents@etoc@before - \ifEtoc@localtoc\ifEtoc@etocstyle\expandafter\expandafter\expandafter\@gobble\fi\fi - \Etoc@tableofcontents@user@before - \Etoc@tableofcontents@contents - \ifEtoc@localtoc\ifEtoc@etocstyle\expandafter\expandafter\expandafter\@gobble\fi\fi - \Etoc@tableofcontents@user@after - \Etoc@tableofcontents@etoc@after - \@gobble\etoc@ -} -\def\Etoc@tableofcontents@etoc@before{% - \ifnum\c@tocdepth>\Etoc@minf - \else - \expandafter\Etoc@gobtoetoc@ - \fi - \Etoc@par - \Etoc@beforetitlehook - \etocbeforetitlehook - \Etoc@storetocdepth - \let\Etoc@savedcontentsline\contentsline - \let\contentsline\Etoc@etoccontentsline - \ifEtoc@standardlines - \else - \def\Etoc@do##1{% - \expandafter\def\csname etocsaved##1tocline\endcsname - {\PackageError{etoc}{% - \expandafter\string\csname etocsaved##1tocline\endcsname\space - has been deprecated\MessageBreak - at 1.1a and is removed at 1.2.\MessageBreak - Use \expandafter\string\csname l@##1\endcsname\space directly.\MessageBreak - Reported \on@line}% - {I will use \expandafter\string - \csname l@##1\endcsname\space myself for this time.% - }% - \csname l@##1\endcsname - }% - }% - \Etoc@dolevels - \fi -}% -\def\Etoc@tableofcontents@contents{% - \Etoc@tocdepthset - \ifEtoc@parskip\parskip\z@skip\fi - \Etoc@aftertitlehook - \gdef\etoclocaltop{-\thr@@}% - \Etoc@toctoc - \etocaftercontentshook -}% -\def\Etoc@tableofcontents@etoc@after{% - \@nobreakfalse - \Etoc@restoretocdepth - \ifx\Etoc@global\global - \@ifundefined{tof@finish} - {} - {\ifx\tof@finish\@empty - \else - \global\let\contentsline\Etoc@savedcontentsline - \fi - }% - \fi -} -\def\etocsetstyle#1{\ifcsname Etoc@#1@@\endcsname - \expandafter\Etoc@setstyle@a - \else - \expandafter\Etoc@setstyle@error - \fi {#1}% -} -\def\Etoc@setstyle@error #1{% - \PackageWarning{etoc}{`#1' is unknown to etoc. \space Did you\MessageBreak - forget some \string\etocsetlevel{#1}{}?\MessageBreak - Reported}% - \@gobblefour -} -\def\Etoc@setstyle@a #1{% - \edef\Etoc@tmp{\the\numexpr\csname Etoc@#1@@\endcsname}% - \if1\unless\ifnum\Etoc@tmp<\Etoc@maxlevel 0\fi - \unless\ifnum\Etoc@tmp>\Etoc@minf 0\fi1% - \Etoc@standardlinesfalse - \expandafter\Etoc@setstyle@b\expandafter\Etoc@tmp - \else - \ifnum\Etoc@tmp=\Etoc@maxlevel - \in@{.#1,}{.figure,.table,}% - \ifin@ - \PackageWarning{etoc} - {You can not use \string\etocsetstyle\space with `#1'.\MessageBreak - Check the package documentation (in particular about\MessageBreak - \string\etoclocallistoffigureshook/\string\etoclocallistoftableshook)% - \MessageBreak on how to customize - figure and table entries in local\MessageBreak lists. Reported}% - \else - \PackageInfo{etoc} - {Attempt to set the style of `#1',\MessageBreak - whose level is currently the maximal one \etocthemaxlevel,\MessageBreak - which is never displayed. \space This will be ignored\MessageBreak - but note that we do quit compatibility mode.\MessageBreak - Reported}% - \Etoc@standardlinesfalse - \fi - \else - \PackageWarning{etoc}{This should not happen. Reported}% - \fi - \expandafter\@gobblefour - \fi -} -\long\def\Etoc@setstyle@b#1#2#3#4#5{% - \expandafter\def\csname Etoc@begin@#1\endcsname {#2}% - \expandafter\def\csname Etoc@prefix@#1\endcsname {#3}% - \expandafter\def\csname Etoc@contents@#1\endcsname {#4}% - \expandafter\def\csname Etoc@end@#1\endcsname {#5}% -} -\def\Etoc@setstyle@e#1{% - \expandafter\let\csname Etoc@begin@#1\endcsname \@empty - \expandafter\let\csname Etoc@prefix@#1\endcsname \@empty - \expandafter\let\csname Etoc@contents@#1\endcsname \@empty - \expandafter\let\csname Etoc@end@#1\endcsname \@empty -} -\def\Etoc@storelines@a#1{% - \noexpand\Etoc@setstyle@b{#1}% - {\expandafter\Etoc@expandonce\csname Etoc@begin@#1\endcsname}% - {\expandafter\Etoc@expandonce\csname Etoc@prefix@#1\endcsname}% - {\expandafter\Etoc@expandonce\csname Etoc@contents@#1\endcsname}% - {\expandafter\Etoc@expandonce\csname Etoc@end@#1\endcsname}% -} -\def\Etoc@expandonce#1{\unexpanded\expandafter{#1}} -\def\etocstorelinestylesinto#1{% - \edef#1{\Etoc@storelines@a{-2}\Etoc@storelines@a{-1}\Etoc@storelines@a{0}% - \Etoc@storelines@a {1}\Etoc@storelines@a {2}\Etoc@storelines@a{3}% - \Etoc@storelines@a {4}\Etoc@storelines@a {5}% - \ifEtoc@deeplevels - \Etoc@storelines@a{6}\Etoc@storelines@a{7}\Etoc@storelines@a{8}% - \Etoc@storelines@a{9}\Etoc@storelines@a{10}\Etoc@storelines@a{11}% - \fi - }% -} -\def\etocstorethislinestyleinto#1#2{% - \edef#2{\expandafter\Etoc@storelines@a\expandafter{\number\etoclevel{#1}}}% -}% -\def\etocfontminustwo {\normalfont \LARGE \bfseries} -\def\etocfontminusone {\normalfont \large \bfseries} -\def\etocfontzero {\normalfont \large \bfseries} -\def\etocfontone {\normalfont \normalsize \bfseries} -\def\etocfonttwo {\normalfont \normalsize} -\def\etocfontthree {\normalfont \footnotesize} -\def\etocsepminustwo {4ex \@plus .5ex \@minus .5ex} -\def\etocsepminusone {4ex \@plus .5ex \@minus .5ex} -\def\etocsepzero {2.5ex \@plus .4ex \@minus .4ex} -\def\etocsepone {1.5ex \@plus .3ex \@minus .3ex} -\def\etocseptwo {.5ex \@plus .1ex \@minus .1ex} -\def\etocsepthree {.25ex \@plus .05ex \@minus .05ex} -\def\etocbaselinespreadminustwo {1} -\def\etocbaselinespreadminusone {1} -\def\etocbaselinespreadzero {1} -\def\etocbaselinespreadone {1} -\def\etocbaselinespreadtwo {1} -\def\etocbaselinespreadthree {.9} -\def\etocminustwoleftmargin {1.5em plus 0.5fil} -\def\etocminustworightmargin {1.5em plus -0.5fil} -\def\etocminusoneleftmargin {1em} -\def\etocminusonerightmargin {1em} -\def\etoctoclineleaders - {\hbox{\normalfont\normalsize\hb@xt@2ex {\hss.\hss}}} -\def\etocabbrevpagename {p.~} -\def\etocpartname {Part} -\def\etocbookname {Book} -\def\etocdefaultlines{% - \Etoc@standardlinesfalse - \etocdefaultlines@setbook - \etocdefaultlines@setpart - \etocdefaultlines@setchapter - \etocdefaultlines@setsection - \etocdefaultlines@setsubsection - \etocdefaultlines@setsubsubsection - \etocdefaultlines@setdeeperones -} -\def\etocnoprotrusion{\leavevmode\kern-\p@\kern\p@} -\@ifclassloaded{memoir}{% - \def\etocdefaultlines@setbook{% - \Etoc@setstyle@b - {-2}% - {\addpenalty\@M\etocskipfirstprefix} - {\addpenalty\@secpenalty} - {\begingroup - \etocfontminustwo - \addvspace{\etocsepminustwo}% - \parindent \z@ - \leftskip \etocminustwoleftmargin - \rightskip \etocminustworightmargin - \parfillskip \@flushglue - \vbox{\etocifnumbered{\etoclink{\etocbookname\enspace\etocthenumber:\quad}}{}% - \etocname - \baselineskip\etocbaselinespreadminustwo\baselineskip - \par}% - \addpenalty\@M\addvspace{\etocsepminusone}% - \endgroup} - {}% - } - }{\let\etocdefaultlines@setbook\@empty} -\def\etocdefaultlines@setpart{% -\Etoc@setstyle@b - {-1}% - {\addpenalty\@M\etocskipfirstprefix} - {\addpenalty\@secpenalty} - {\begingroup - \etocfontminusone - \addvspace{\etocsepminusone}% - \parindent \z@ - \leftskip \etocminusoneleftmargin - \rightskip \etocminusonerightmargin - \parfillskip \@flushglue - \vbox{\etocifnumbered{\etoclink{\etocpartname\enspace\etocthenumber.\quad}}{}% - \etocname - \baselineskip\etocbaselinespreadminusone\baselineskip - \par}% - \addpenalty\@M\addvspace{\etocsepzero}% - \endgroup} - {}% -} -\def\etocdefaultlines@setchapter{% -\Etoc@setstyle@b - {0}% - {\addpenalty\@M\etocskipfirstprefix} - {\addpenalty\@itempenalty} - {\begingroup - \etocfontzero - \addvspace{\etocsepzero}% - \parindent \z@ \parfillskip \@flushglue - \vbox{\etocifnumbered{\etocnumber.\enspace}{}\etocname - \baselineskip\etocbaselinespreadzero\baselineskip - \par}% - \endgroup} - {\addpenalty{-\@highpenalty}\addvspace{\etocsepminusone}}% -} -\def\etocdefaultlines@setsection{% -\Etoc@setstyle@b - {1}% - {\addpenalty\@M\etocskipfirstprefix} - {\addpenalty\@itempenalty} - {\begingroup - \etocfontone - \addvspace{\etocsepone}% - \parindent \z@ \parfillskip \z@ - \setbox\z@\vbox{\parfillskip\@flushglue - \etocname\par - \setbox\tw@\lastbox - \global\setbox\@ne\hbox{\unhbox\tw@\ }}% - \dimen\z@=\wd\@ne - \setbox\z@=\etoctoclineleaders - \advance\dimen\z@\wd\z@ - \etocifnumbered - {\setbox\tw@\hbox{\etocnumber, \etocabbrevpagename\etocpage\etocnoprotrusion}} - {\setbox\tw@\hbox{\etocabbrevpagename\etocpage\etocnoprotrusion}}% - \advance\dimen\z@\wd\tw@ - \ifdim\dimen\z@ < \linewidth - \vbox{\etocname~% - \leaders\box\z@\hfil\box\tw@ - \baselineskip\etocbaselinespreadone\baselineskip - \par}% - \else - \vbox{\etocname~% - \leaders\copy\z@\hfil\break - \hbox{}\leaders\box\z@\hfil\box\tw@ - \baselineskip\etocbaselinespreadone\baselineskip - \par}% - \fi - \endgroup} - {\addpenalty\@secpenalty\addvspace{\etocsepzero}}% -} -\def\etocdefaultlines@setsubsection{% -\Etoc@setstyle@b - {2}% - {\addpenalty\@medpenalty\etocskipfirstprefix} - {\addpenalty\@itempenalty} - {\begingroup - \etocfonttwo - \addvspace{\etocseptwo}% - \parindent \z@ \parfillskip \z@ - \setbox\z@\vbox{\parfillskip\@flushglue - \etocname\par\setbox\tw@\lastbox - \global\setbox\@ne\hbox{\unhbox\tw@}}% - \dimen\z@=\wd\@ne - \setbox\z@=\etoctoclineleaders - \advance\dimen\z@\wd\z@ - \etocifnumbered - {\setbox\tw@\hbox{\etocnumber, \etocabbrevpagename\etocpage\etocnoprotrusion}} - {\setbox\tw@\hbox{\etocabbrevpagename\etocpage\etocnoprotrusion}}% - \advance\dimen\z@\wd\tw@ - \ifdim\dimen\z@ < \linewidth - \vbox{\etocname~% - \leaders\box\z@\hfil\box\tw@ - \baselineskip\etocbaselinespreadtwo\baselineskip - \par}% - \else - \vbox{\etocname~% - \leaders\copy\z@\hfil\break - \hbox{}\leaders\box\z@\hfil\box\tw@ - \baselineskip\etocbaselinespreadtwo\baselineskip - \par}% - \fi - \endgroup} - {\addpenalty\@secpenalty\addvspace{\etocsepone}}% -} -\def\etocdefaultlines@setsubsubsection{% -\Etoc@setstyle@b - {3}% - {\addpenalty\@M - \etocfontthree - \vspace{\etocsepthree}% - \noindent - \etocskipfirstprefix} - {\allowbreak\,--\,} - {\etocname} - {.\hfil - \begingroup - \baselineskip\etocbaselinespreadthree\baselineskip - \par - \endgroup - \addpenalty{-\@highpenalty}} -} -\def\etocdefaultlines@setdeeperones{% -\Etoc@setstyle@e{4}% -\Etoc@setstyle@e{5}% -\ifEtoc@deeplevels - \Etoc@setstyle@e{6}% - \Etoc@setstyle@e{7}% - \Etoc@setstyle@e{8}% - \Etoc@setstyle@e{9}% - \Etoc@setstyle@e{10}% - \Etoc@setstyle@e{11}% -\fi -} -\def\etocabovetocskip{3.5ex \@plus 1ex \@minus .2ex} -\def\etocbelowtocskip{3.5ex \@plus 1ex \@minus .2ex} -\def\etoccolumnsep{2em} -\def\etocmulticolsep{0ex} -\def\etocmulticolpretolerance{-1} -\def\etocmulticoltolerance{200} -\def\etocdefaultnbcol{2} -\def\etocinnertopsep{2ex} -\newcommand\etocmulticolstyle[2][\etocdefaultnbcol]{% -\etocsettocstyle - {\let\etocoldpar\par - \addvspace{\etocabovetocskip}% - \ifnum #1>\@ne - \expandafter\@firstoftwo - \else \expandafter\@secondoftwo - \fi - {\multicolpretolerance\etocmulticolpretolerance - \multicoltolerance\etocmulticoltolerance - \setlength{\columnsep}{\etoccolumnsep}% - \setlength{\multicolsep}{\etocmulticolsep}% - \begin{multicols}{#1}[#2\etocoldpar\addvspace{\etocinnertopsep}]} - {#2\ifvmode\else\begingroup\interlinepenalty\@M\parskip\z@skip - \@@par\endgroup - \fi - \nobreak\addvspace{\etocinnertopsep}% - \pretolerance\etocmulticolpretolerance - \tolerance\etocmulticoltolerance}% - }% - {\ifnum #1>\@ne - \expandafter\@firstofone - \else \expandafter\@gobble - \fi - {\end{multicols}}% - \addvspace{\etocbelowtocskip}}% -} -\def\etocinnerbottomsep{3.5ex} -\def\etocinnerleftsep{2em} -\def\etocinnerrightsep{2em} -\def\etoctoprule{\hrule} -\def\etocleftrule{\vrule} -\def\etocrightrule{\vrule} -\def\etocbottomrule{\hrule} -\def\etoctoprulecolorcmd{\relax} -\def\etocbottomrulecolorcmd{\relax} -\def\etocleftrulecolorcmd{\relax} -\def\etocrightrulecolorcmd{\relax} -\def\etoc@ruledheading #1{% - \hb@xt@\linewidth{\color@begingroup - \hss #1\hss\hskip-\linewidth - \etoctoprulecolorcmd\leaders\etoctoprule\hss - \phantom{#1}% - \leaders\etoctoprule\hss\color@endgroup}% - \nointerlineskip\nobreak\vskip\etocinnertopsep} -\newcommand*\etocruledstyle[2][\etocdefaultnbcol]{% -\etocsettocstyle - {\addvspace{\etocabovetocskip}% - \ifnum #1>\@ne - \expandafter\@firstoftwo - \else \expandafter\@secondoftwo - \fi - {\multicolpretolerance\etocmulticolpretolerance - \multicoltolerance\etocmulticoltolerance - \setlength{\columnsep}{\etoccolumnsep}% - \setlength{\multicolsep}{\etocmulticolsep}% - \begin{multicols}{#1}[\etoc@ruledheading{#2}]} - {\etoc@ruledheading{#2}% - \pretolerance\etocmulticolpretolerance - \tolerance\etocmulticoltolerance}} - {\ifnum #1>\@ne\expandafter\@firstofone - \else \expandafter\@gobble - \fi - {\end{multicols}}% - \addvspace{\etocbelowtocskip}}} -\def\etocframedmphook{\relax} -\long\def\etocbkgcolorcmd{\relax} -\long\def\Etoc@relax{\relax} -\newbox\etoc@framed@titlebox -\newbox\etoc@framed@contentsbox -\newcommand*\etocframedstyle[2][\etocdefaultnbcol]{% -\etocsettocstyle{% - \addvspace{\etocabovetocskip}% - \sbox\z@{#2}% - \dimen\z@\dp\z@ - \ifdim\wd\z@<\linewidth \dp\z@\z@ \else \dimen\z@\z@ \fi - \setbox\etoc@framed@titlebox=\hb@xt@\linewidth{\color@begingroup - \hss - \ifx\etocbkgcolorcmd\Etoc@relax - \else - \sbox\tw@{\color{white}% - \vrule\@width\wd\z@\@height\ht\z@\@depth\dimen\z@}% - \ifdim\wd\z@<\linewidth \dp\tw@\z@\fi - \box\tw@ - \hskip-\wd\z@ - \fi - \copy\z@ - \hss - \hskip-\linewidth - \etoctoprulecolorcmd\leaders\etoctoprule\hss - \hskip\wd\z@ - \etoctoprulecolorcmd\leaders\etoctoprule\hss\color@endgroup}% - \setbox\z@\hbox{\etocleftrule\etocrightrule}% - \dimen\tw@\linewidth\advance\dimen\tw@-\wd\z@ - \advance\dimen\tw@-\etocinnerleftsep - \advance\dimen\tw@-\etocinnerrightsep - \setbox\etoc@framed@contentsbox=\vbox\bgroup - \hsize\dimen\tw@ - \kern\dimen\z@ - \vskip\etocinnertopsep - \hbox\bgroup - \begin{minipage}{\hsize}% - \etocframedmphook - \ifnum #1>\@ne - \expandafter\@firstoftwo - \else \expandafter\@secondoftwo - \fi - {\multicolpretolerance\etocmulticolpretolerance - \multicoltolerance\etocmulticoltolerance - \setlength{\columnsep}{\etoccolumnsep}% - \setlength{\multicolsep}{\etocmulticolsep}% - \begin{multicols}{#1}} - {\pretolerance\etocmulticolpretolerance - \tolerance\etocmulticoltolerance}} - {\ifnum #1>\@ne\expandafter\@firstofone - \else \expandafter\@gobble - \fi - {\end{multicols}\unskip }% - \end{minipage}% - \egroup - \vskip\etocinnerbottomsep - \egroup - \vbox{\hsize\linewidth - \ifx\etocbkgcolorcmd\Etoc@relax - \else - \kern\ht\etoc@framed@titlebox - \kern\dp\etoc@framed@titlebox - \hb@xt@\linewidth{\color@begingroup - \etocleftrulecolorcmd\etocleftrule - \etocbkgcolorcmd - \leaders\vrule - \@height\ht\etoc@framed@contentsbox - \@depth\dp\etoc@framed@contentsbox - \hss - \etocrightrulecolorcmd\etocrightrule - \color@endgroup}\nointerlineskip - \vskip-\dp\etoc@framed@contentsbox - \vskip-\ht\etoc@framed@contentsbox - \vskip-\dp\etoc@framed@titlebox - \vskip-\ht\etoc@framed@titlebox - \fi - \box\etoc@framed@titlebox\nointerlineskip - \hb@xt@\linewidth{\color@begingroup - {\etocleftrulecolorcmd\etocleftrule}% - \hss\box\etoc@framed@contentsbox\hss - \etocrightrulecolorcmd\etocrightrule\color@endgroup} - \nointerlineskip - \vskip\ht\etoc@framed@contentsbox - \vskip\dp\etoc@framed@contentsbox - \hb@xt@\linewidth{\color@begingroup\etocbottomrulecolorcmd - \leaders\etocbottomrule\hss\color@endgroup}} - \addvspace{\etocbelowtocskip}}} -\newcommand\etoc@multicoltoc[2][\etocdefaultnbcol]{% - \etocmulticolstyle[#1]{#2}% - \tableofcontents} -\newcommand\etoc@multicoltoci[2][\etocdefaultnbcol]{% - \etocmulticolstyle[#1]{#2}% - \tableofcontents*} -\newcommand\etoc@local@multicoltoc[2][\etocdefaultnbcol]{% - \etocmulticolstyle[#1]{#2}% - \localtableofcontents} -\newcommand\etoc@local@multicoltoci[2][\etocdefaultnbcol]{% - \etocmulticolstyle[#1]{#2}% - \localtableofcontents*} -\newcommand*\etoc@ruledtoc[2][\etocdefaultnbcol]{% - \etocruledstyle[#1]{#2}% - \tableofcontents} -\newcommand*\etoc@ruledtoci[2][\etocdefaultnbcol]{% - \etocruledstyle[#1]{#2}% - \tableofcontents*} -\newcommand*\etoc@local@ruledtoc[2][\etocdefaultnbcol]{% - \etocruledstyle[#1]{#2}% - \localtableofcontents} -\newcommand*\etoc@local@ruledtoci[2][\etocdefaultnbcol]{% - \etocruledstyle[#1]{#2}% - \localtableofcontents*} -\newcommand*\etoc@framedtoc[2][\etocdefaultnbcol]{% - \etocframedstyle[#1]{#2}% - \tableofcontents} -\newcommand*\etoc@framedtoci[2][\etocdefaultnbcol]{% - \etocframedstyle[#1]{#2}% - \tableofcontents*} -\newcommand*\etoc@local@framedtoc[2][\etocdefaultnbcol]{% - \etocframedstyle[#1]{#2}% - \localtableofcontents} -\newcommand*\etoc@local@framedtoci[2][\etocdefaultnbcol]{% - \etocframedstyle[#1]{#2}% - \localtableofcontents*} -\def\etocmulticol{\begingroup - \Etoc@mustclosegrouptrue - \@ifstar - {\etoc@multicoltoci} - {\etoc@multicoltoc}} -\def\etocruled{\begingroup - \Etoc@mustclosegrouptrue - \@ifstar - {\etoc@ruledtoci} - {\etoc@ruledtoc}} -\def\etocframed{\begingroup - \Etoc@mustclosegrouptrue - \@ifstar - {\etoc@framedtoci} - {\etoc@framedtoc}} -\def\etoclocalmulticol{\begingroup - \Etoc@mustclosegrouptrue - \@ifstar - {\etoc@local@multicoltoci} - {\etoc@local@multicoltoc}} -\def\etoclocalruled{\begingroup - \Etoc@mustclosegrouptrue - \@ifstar - {\etoc@local@ruledtoci} - {\etoc@local@ruledtoc}} -\def\etoclocalframed{\begingroup - \Etoc@mustclosegrouptrue - \@ifstar - {\etoc@local@framedtoci} - {\etoc@local@framedtoc}} -\def\etocmemoirtoctotocfmt #1#2{% - \PackageWarning{etoc} - {\string\etocmemoirtoctotocfmt\space is deprecated.\MessageBreak - Use in its place \string\etocsettoclineforclasstoc,\MessageBreak - and \string\etocsettoclineforclasslistof{toc} (or {lof}, {lot}). - I will do this now.\MessageBreak - Reported}% - \etocsettoclineforclasstoc{#1}{#2}% - \etocsettoclineforclasslistof{toc}{#1}{#2}% -} -\def\etocsettoclineforclasstoc #1#2{% - \def\etocclassmaintocaddtotoc{\etocglobalheadtotoc{#1}{#2}}% -} -\def\etocsettoclineforclasslistof #1#2#3{% - \@namedef{etocclasslocal#1addtotoc}{\etoclocalheadtotoc{#2}{#3}}% -} -\let\etocclasslocaltocaddtotoc\@empty -\let\etocclasslocallofaddtotoc\@empty -\let\etocclasslocallotaddtotoc\@empty -\ifdefined\c@chapter - \def\etocclasslocaltocmaketitle{\section*{\localcontentsname}} - \def\etocclasslocallofmaketitle{\section*{\locallistfigurename}} - \def\etocclasslocallotmaketitle{\section*{\locallisttablename}} - \etocsettoclineforclasstoc {chapter}{\contentsname} - \etocsettoclineforclasslistof{toc}{section}{\localcontentsname} - \etocsettoclineforclasslistof{lof}{section}{\locallistfigurename} - \etocsettoclineforclasslistof{lot}{section}{\locallisttablename} -\else - \def\etocclasslocaltocmaketitle{\subsection*{\localcontentsname}}% - \def\etocclasslocallofmaketitle{\subsection*{\locallistfigurename}}% - \def\etocclasslocallotmaketitle{\subsection*{\locallisttablename}}% - \etocsettoclineforclasstoc {section}{\contentsname} - \etocsettoclineforclasslistof{toc}{subsection}{\localcontentsname} - \etocsettoclineforclasslistof{lof}{subsection}{\locallistfigurename} - \etocsettoclineforclasslistof{lot}{subsection}{\locallisttablename} -\fi -\def\etocclasslocalperhapsaddtotoc #1{% - \etocifisstarred - {} - {\csname ifEtoc@local#1totoc\endcsname - \csname etocclasslocal#1addtotoc\endcsname - \fi - }% -} -\def\etocarticlestyle{% - \etocsettocstyle - {\ifEtoc@localtoc - \@nameuse{etocclasslocal\Etoc@currext maketitle}% - \etocclasslocalperhapsaddtotoc\Etoc@currext - \else - \section *{\contentsname - \@mkboth {\MakeUppercase \contentsname} - {\MakeUppercase \contentsname}}% - \etocifisstarred{}{\etocifmaintoctotoc{\etocclassmaintocaddtotoc}{}}% - \fi - } - {}% -} -\def\etocarticlestylenomarks{% - \etocsettocstyle - {\ifEtoc@localtoc - \@nameuse{etocclasslocal\Etoc@currext maketitle}% - \etocclasslocalperhapsaddtotoc\Etoc@currext - \else - \section *{\contentsname}% - \etocifisstarred{}{\etocifmaintoctotoc{\etocclassmaintocaddtotoc}{}}% - \fi - } - {}% -} -\def\etocbookstyle{% - \etocsettocstyle - {\if@twocolumn \@restonecoltrue \onecolumn \else \@restonecolfalse \fi - \ifEtoc@localtoc - \@nameuse{etocclasslocal\Etoc@currext maketitle}% - \etocclasslocalperhapsaddtotoc\Etoc@currext - \else - \chapter *{\contentsname - \@mkboth {\MakeUppercase \contentsname} - {\MakeUppercase \contentsname}}% - \etocifisstarred{}{\etocifmaintoctotoc{\etocclassmaintocaddtotoc}{}}% - \fi - }% - {\if@restonecol \twocolumn \fi}% -} -\def\etocbookstylenomarks{% - \etocsettocstyle - {\if@twocolumn \@restonecoltrue \onecolumn \else \@restonecolfalse \fi - \ifEtoc@localtoc - \@nameuse{etocclasslocal\Etoc@currext maketitle}% - \etocclasslocalperhapsaddtotoc\Etoc@currext - \else - \chapter *{\contentsname}% - \etocifisstarred{}{\etocifmaintoctotoc{\etocclassmaintocaddtotoc}{}}% - \fi - }% - {\if@restonecol \twocolumn \fi}% -} -\let\etocreportstyle\etocbookstyle -\let\etocreportstylenomarks\etocbookstylenomarks -\def\etocmemoirstyle{% - \etocsettocstyle - {\ensureonecol \par \begingroup \phantomsection - \ifx\Etoc@aftertitlehook\@empty - \else - \ifmem@em@starred@listof - \else - \ifEtoc@localtoc - \etocclasslocalperhapsaddtotoc\Etoc@currext - \else - \ifEtoc@maintoctotoc - \etocclassmaintocaddtotoc - \fi - \fi - \fi - \fi - \ifEtoc@localtoc - \@namedef{@\Etoc@currext maketitle}{% - \@nameuse{etocclasslocal\Etoc@currext maketitle}% - }% - \fi - \@nameuse {@\Etoc@currext maketitle} %<< space token here from memoir code - \ifx\Etoc@aftertitlehook\@empty - \else - \Etoc@aftertitlehook \let \Etoc@aftertitlehook \relax - \fi - \parskip \cftparskip \@nameuse {cft\Etoc@currext beforelisthook}% - }% - {\@nameuse {cft\Etoc@currext afterlisthook}% - \endgroup\restorefromonecol - }% -} -\let\Etoc@beforetitlehook\@empty -\if1\@ifclassloaded{scrartcl}0{\@ifclassloaded{scrbook}0{\@ifclassloaded{scrreprt}01}}% -\expandafter\@gobble -\else - \ifdefined\setuptoc - \def\Etoc@beforetitlehook{% - \ifEtoc@localtoc - \etocclasslocalperhapsaddtotoc\Etoc@currext - \setuptoc{\Etoc@currext}{leveldown}% - \else - \etocifisstarred{}{\etocifmaintoctotoc{\setuptoc{toc}{totoc}}}% - \fi - }% - \fi -\expandafter\@firstofone -\fi -{\def\etocclasslocalperhapsaddtotoc #1{% - \etocifisstarred - {}% - {\csname ifEtoc@local#1totoc\endcsname - \setuptoc{\Etoc@currext}{totoc}% - \fi - }% - }% -} -\ifdefined\Iftocfeature - \def\etoc@Iftocfeature{\Iftocfeature}% -\else - \def\etoc@Iftocfeature{\iftocfeature}% -\fi -\def\etocscrartclstyle{% - \etocsettocstyle - {\ifx\Etoc@currext\Etoc@tocext - \expandafter\@firstofone - \else - \expandafter\@gobble - \fi - {\let\if@dynlist\if@tocleft}% - \edef\@currext{\Etoc@currext}% - \@ifundefined{listof\@currext name}% - {\def\list@fname{\listofname~\@currext}}% - {\expandafter\let\expandafter\list@fname - \csname listof\@currext name\endcsname}% - \etoc@Iftocfeature {\@currext}{onecolumn} - {\etoc@Iftocfeature {\@currext}{leveldown} - {} - {\if@twocolumn \aftergroup \twocolumn \onecolumn \fi }} - {}% - \etoc@Iftocfeature {\@currext}{numberline}% - {\def \nonumberline {\numberline {}}}{}% - \expandafter\tocbasic@listhead\expandafter {\list@fname}% - \begingroup \expandafter \expandafter \expandafter - \endgroup \expandafter - \ifx - \csname microtypesetup\endcsname \relax - \else - \etoc@Iftocfeature {\@currext}{noprotrusion}{} - {\microtypesetup {protrusion=false}% - \PackageInfo {tocbasic}% - {character protrusion at \@currext\space deactivated}}% - \fi - \etoc@Iftocfeature{\@currext}{noparskipfake}{}{% - \ifvmode \@tempskipa\lastskip \vskip-\lastskip - \addtolength{\@tempskipa}{\parskip}\vskip\@tempskipa\fi - }% - \setlength {\parskip }{\z@ }% - \setlength {\parindent }{\z@ }% - \setlength {\parfillskip }{\z@ \@plus 1fil}% - \csname tocbasic@@before@hook\endcsname - \csname tb@\@currext @before@hook\endcsname - }% end of before_toc - {% start of after_toc - \providecommand\tocbasic@end@toc@file{}\tocbasic@end@toc@file - \edef\@currext{\Etoc@currext}% - \csname tb@\@currext @after@hook\endcsname - \csname tocbasic@@after@hook\endcsname - }% end of after_toc -} -\let\etocscrbookstyle\etocscrartclstyle -\let\etocscrreprtstyle\etocscrartclstyle -\def\etocclasstocstyle{\etocarticlestyle} -\newcommand*\etocmarkboth[1]{% - \@mkboth{\MakeUppercase{#1}}{\MakeUppercase{#1}}} -\newcommand*\etocmarkbothnouc[1]{\@mkboth{#1}{#1}} -\newcommand\etoctocstyle[3][section]{\etocmulticolstyle[#2]% - {\csname #1\endcsname *{#3}}} -\newcommand\etoctocstylewithmarks[4][section]{\etocmulticolstyle[#2]% - {\csname #1\endcsname *{#3\etocmarkboth{#4}}}} -\newcommand\etoctocstylewithmarksnouc[4][section]{\etocmulticolstyle[#2]% - {\csname #1\endcsname *{#3\etocmarkbothnouc{#4}}}} -\def\Etoc@redefetocstylesforchapters{% - \renewcommand\etoctocstylewithmarks[4][chapter]{% - \etocmulticolstyle[##2]{\csname ##1\endcsname *{##3\etocmarkboth{##4}}}% - } - \renewcommand\etoctocstylewithmarksnouc[4][chapter]{% - \etocmulticolstyle[##2]{\csname ##1\endcsname *{##3\etocmarkbothnouc{##4}}}% - } - \renewcommand\etoctocstyle[3][chapter]{% - \etocmulticolstyle[##2]{\csname ##1\endcsname *{##3}} - } -} -\@ifclassloaded{scrartcl} - {\renewcommand*\etocclasstocstyle{\etocscrartclstyle}}{} -\@ifclassloaded{book} - {\renewcommand*\etocfontone{\normalfont\normalsize} - \renewcommand*\etocclasstocstyle{\etocbookstyle} - \Etoc@redefetocstylesforchapters}{} -\@ifclassloaded{report} - {\renewcommand*\etocfontone{\normalfont\normalsize} - \renewcommand*\etocclasstocstyle{\etocreportstyle} - \Etoc@redefetocstylesforchapters}{} -\@ifclassloaded{scrbook} - {\renewcommand*\etocfontone{\normalfont\normalsize} - \renewcommand*\etocclasstocstyle{\etocscrbookstyle} - \Etoc@redefetocstylesforchapters}{} -\@ifclassloaded{scrreprt} - {\renewcommand*\etocfontone{\normalfont\normalsize} - \renewcommand*\etocclasstocstyle{\etocscrreprtstyle} - \Etoc@redefetocstylesforchapters}{} -\@ifclassloaded{memoir} - {\renewcommand*\etocfontone{\normalfont\normalsize} - \renewcommand*\etocclasstocstyle{\etocmemoirstyle} - \Etoc@redefetocstylesforchapters}{} -\def\etoctocloftstyle {% - \etocsettocstyle{% - \@cfttocstart - \par - \begingroup - \parindent\z@ \parskip\cftparskip - \@nameuse{@cftmake\Etoc@currext title}% - \ifEtoc@localtoc - \etoctocloftlocalperhapsaddtotoc\Etoc@currext - \else - \etocifisstarred {}{\ifEtoc@maintoctotoc\@cftdobibtoc\fi}% - \fi - }% - {% - \endgroup - \@cfttocfinish - }% -} -\def\etoctocloftlocalperhapsaddtotoc#1{% - \etocifisstarred - {}% - {\csname ifEtoc@local#1totoc\endcsname - \ifdefined\c@chapter\def\@tocextra{@section}\else\def\@tocextra{@subsection}\fi - \csname @cftdobib#1\endcsname - \fi - }% -} -\def\etoctocbibindstyle {% - \etocsettocstyle {% - \toc@start - \ifEtoc@localtoc - \@nameuse{etocclasslocal\Etoc@currext maketitle}% - \etocclasslocalperhapsaddtotoc\Etoc@currext - \else - \etoc@tocbibind@dotoctitle - \fi - }% - {\toc@finish}% -} -\def\etoc@tocbibind@dotoctitle {% - \if@bibchapter - \etocifisstarred - {\chapter*{\contentsname}\prw@mkboth{\contentsname} % id. - }% - {\ifEtoc@maintoctotoc - \toc@chapter{\contentsname} %<-space from original - \else - \chapter*{\contentsname}\prw@mkboth{\contentsname} % id. - \fi - }% - \else - \etocifisstarred - {\@nameuse{\@tocextra}*{\contentsname\prw@mkboth{\contentsname}} %<-space - } - {\ifEtoc@maintoctotoc - \toc@section{\@tocextra}{\contentsname} %<-space from original - \else - \@nameuse{\@tocextra}*{\contentsname\prw@mkboth{\contentsname}} % id. - \fi - }% - \fi -}% -\@ifclassloaded{memoir} -{} -{% memoir not loaded - \@ifpackageloaded{tocloft} - {\if@cftnctoc\else - \ifEtoc@keeporiginaltoc - \else - \AtBeginDocument{\let\tableofcontents\etoctableofcontents}% - \fi - \fi } - {\AtBeginDocument - {\@ifpackageloaded{tocloft} - {\if@cftnctoc\else - \PackageWarningNoLine {etoc} - {Package `tocloft' was loaded after `etoc'.\MessageBreak - To prevent it from overwriting \protect\tableofcontents, it will\MessageBreak - be tricked into believing to have been loaded with its\MessageBreak - option `titles'. \space But this will cause the `tocloft'\MessageBreak - customization of the titles of the main list of figures\MessageBreak - and list of tables to not apply either.\MessageBreak - You should load `tocloft' before `etoc'.}% - \AtEndDocument{\PackageWarning{etoc} - {Please load `tocloft' before `etoc'!\@gobbletwo}}% - \fi - \@cftnctoctrue }% - {}% - }% - }% -} -\@ifclassloaded{memoir} -{} -{% memoir not loaded - \AtBeginDocument{% - \@ifpackageloaded{tocloft} - {% - \def\etocclasstocstyle{% - \etoctocloftstyle - \Etoc@classstyletrue - }% - \ifEtoc@etocstyle - \ifEtoc@classstyle - \etocclasstocstyle - \Etoc@etocstyletrue - \fi - \else - \ifEtoc@classstyle - \etocclasstocstyle - \fi - \fi - }% - {% no tocloft - \@ifpackageloaded {tocbibind} - {\if@dotoctoc - \def\etocclasstocstyle{% - \etoctocbibindstyle - \Etoc@classstyletrue - }% - \ifEtoc@etocstyle - \ifEtoc@classstyle - \etocclasstocstyle - \Etoc@etocstyletrue - \fi - \else - \ifEtoc@classstyle - \etocclasstocstyle - \fi - \fi - \ifEtoc@keeporiginaltoc - \else - \let\tableofcontents\etoctableofcontents - \fi - }% - {}% - }% - \@ifpackageloaded{tocbibind} - {% tocbibind, perhaps with tocloft - \if@dotoctoc - \ifEtoc@keeporiginaltoc - \else - \let\tableofcontents\etoctableofcontents - \fi - \etocsetup{maintoctotoc,localtoctotoc}% - \PackageInfo{etoc}{% - Setting (or re-setting) the options `maintoctotoc' and\MessageBreak - `localtoctotoc' to true as tocbibind was detected and\MessageBreak - found to be configured for `TOC to toc'.\MessageBreak - Reported at begin document}% - \fi - \if@dotoclof - \ifEtoc@lof - \etocsetup{localloftotoc}% - \PackageInfo{etoc}{% - Setting (or re-setting) `localloftotoc=true' as the\MessageBreak - package tocbibind was detected and is configured for\MessageBreak - `LOF to toc'. Reported at begin document}% - \fi - \fi - \if@dotoclot - \ifEtoc@lot - \etocsetup{locallottotoc}% - \PackageInfo{etoc}{% - Setting (or re-setting) `locallottotoc=true' as the\MessageBreak - package tocbibind was detected and is configured for\MessageBreak - `LOT to toc'. Reported at begin document}% - \fi - \fi - }% end of tocbibind branch - {}% - }% end of at begin document -}% end of not with memoir branch -\def\Etoc@addtocontents #1#2{% - \addtocontents {toc}{% - \protect\contentsline{#1}{#2}{\thepage}{\ifEtoc@hyperref\@currentHref\fi}% - \ifdefined\protected@file@percent\protected@file@percent\fi - }% -} -\def\Etoc@addcontentsline@ #1#2#3{% - \@namedef{toclevel@#1}{#3}\addcontentsline {toc}{#1}{#2}% -} -\DeclareRobustCommand*{\etoctoccontentsline} - {\@ifstar{\Etoc@addcontentsline@}{\Etoc@addtocontents}} -\def\Etoc@addtocontents@immediately#1#2{% - \begingroup - \let\Etoc@originalwrite\write - \def\write{\immediate\Etoc@originalwrite}% - \Etoc@addtocontents{#1}{#2}% - \endgroup -} -\def\Etoc@addcontentsline@@immediately#1#2#3{% - \begingroup - \let\Etoc@originalwrite\write - \def\write{\immediate\Etoc@originalwrite}% - \Etoc@addcontentsline@{#1}{#2}{#3}% - \endgoroup -} -\DeclareRobustCommand*{\etocimmediatetoccontentsline} - {\@ifstar{\Etoc@addcontentsline@@immediately}{\Etoc@addtocontents@immediately}} -\def\Etoc@storetocdepth {\xdef\Etoc@savedtocdepth{\number\c@tocdepth}} -\def\Etoc@restoretocdepth {\global\c@tocdepth\Etoc@savedtocdepth\relax} -\def\etocobeytoctocdepth {\def\etoc@settocdepth - {\afterassignment\Etoc@@nottoodeep \global\c@tocdepth}} -\def\Etoc@@nottoodeep {\ifnum\Etoc@savedtocdepth<\c@tocdepth - \global\c@tocdepth\Etoc@savedtocdepth\relax\fi } -\def\etocignoretoctocdepth {\let\etoc@settocdepth\@gobble } -\def\etocsettocdepth {\futurelet\Etoc@nexttoken\Etoc@set@tocdepth } -\def\Etoc@set@tocdepth {\ifx\Etoc@nexttoken\bgroup - \expandafter\Etoc@set@tocdepth@ - \else\expandafter\Etoc@set@toctocdepth - \fi } -\def\Etoc@set@tocdepth@ #1{\@ifundefined {Etoc@#1@@} - {\PackageWarning{etoc} - {Unknown sectioning unit #1, \protect\etocsettocdepth\space ignored}} - {\global\c@tocdepth\csname Etoc@#1@@\endcsname}% -} -\def\Etoc@set@toctocdepth #1#{\Etoc@set@toctocdepth@ } -\def\Etoc@set@toctocdepth@ #1{% - \@ifundefined{Etoc@#1@@}% - {\PackageWarning{etoc} - {Unknown sectioning depth #1, \protect\etocsettocdepth.toc ignored}}% - {\addtocontents {toc} - {\protect\etoc@settocdepth\expandafter\protect\csname Etoc@#1@@\endcsname}}% -} -\def\etocimmediatesettocdepth #1#{\Etoc@set@toctocdepth@immediately} -\def\Etoc@set@toctocdepth@immediately #1{% - \@ifundefined{Etoc@#1@@}% - {\PackageWarning{etoc} - {Unknown sectioning depth #1, \protect\etocimmediatesettocdepth.toc ignored}}% - {\begingroup - \let\Etoc@originalwrite\write - \def\write{\immediate\Etoc@originalwrite}% - \addtocontents {toc} - {\protect\etoc@settocdepth\expandafter\protect - \csname Etoc@#1@@\endcsname}% - \endgroup - }% -} -\def\etocdepthtag #1#{\Etoc@depthtag } -\def\Etoc@depthtag #1{\addtocontents {toc}{\protect\etoc@depthtag {#1}}} -\def\etocimmediatedepthtag #1#{\Etoc@depthtag@immediately } -\def\Etoc@depthtag@immediately #1{% - \begingroup - \let\Etoc@originalwrite\write - \def\write{\immediate\Etoc@originalwrite}% - \addtocontents {toc}{\protect\etoc@depthtag {#1}}% - \endgroup -} -\def\etocignoredepthtags {\let\etoc@depthtag \@gobble } -\def\etocobeydepthtags {\let\etoc@depthtag \Etoc@depthtag@ } -\def\Etoc@depthtag@ #1{\@ifundefined{Etoc@depthof@#1}% - {}% ignore in silence if tag has no associated depth - {\afterassignment\Etoc@@nottoodeep - \global\c@tocdepth\csname Etoc@depthof@#1\endcsname}% -} -\def\etocsettagdepth #1#2{\@ifundefined{Etoc@#2@@}% - {\PackageWarning{etoc} - {Unknown sectioning depth #2, \protect\etocsettagdepth\space ignored}}% - {\@namedef{Etoc@depthof@#1}{\@nameuse{Etoc@#2@@}}}% -} -\def\Etoc@tocvsec@err #1{\PackageError {etoc} - {The command \protect#1\space is incompatible with `etoc'} - {Use \protect\etocsettocdepth.toc as replacement}% -}% -\AtBeginDocument {% - \@ifclassloaded{memoir} - {\PackageInfo {etoc} - {Regarding `memoir' class command \protect\settocdepth, consider\MessageBreak - \protect\etocsettocdepth.toc as a drop-in replacement with more\MessageBreak - capabilities (see `etoc' manual). \space - Also, \protect\etocsettocdepth\MessageBreak - and \protect\etocsetnexttocdepth\space should be used in place of\MessageBreak - `memoir' command \protect\maxtocdepth\@gobble}% - }% - {\@ifpackageloaded {tocvsec2}{% - \def\maxtocdepth #1{\Etoc@tocvsec@err \maxtocdepth }% - \def\settocdepth #1{\Etoc@tocvsec@err \settocdepth }% - \def\resettocdepth {\@ifstar {\Etoc@tocvsec@err \resettocdepth }% - {\Etoc@tocvsec@err \resettocdepth }% - }% - \def\save@tocdepth #1#2#3{}% - \let\reset@tocdepth\relax - \let\remax@tocdepth\relax - \let\tableofcontents\etoctableofcontents - \PackageWarningNoLine {etoc} - {Package `tocvsec2' detected and its modification of\MessageBreak - \protect\tableofcontents\space reverted. \space Use - \protect\etocsettocdepth.toc\MessageBreak as a replacement - for `tocvsec2' toc-related commands}% - }% tocvsec2 loaded - {}% tocvsec2 not loaded - }% -}% -\def\invisibletableofcontents {\etocsetnexttocdepth {-3}\tableofcontents }% -\def\invisiblelocaltableofcontents - {\etocsetnexttocdepth {-3}\localtableofcontents }% -\def\etocsetnexttocdepth #1{% - \@ifundefined{Etoc@#1@@} - {\PackageWarning{etoc} - {Unknown sectioning unit #1, \protect\etocsetnextocdepth\space ignored}} - {\Etoc@setnexttocdepth{\csname Etoc@#1@@\endcsname}}% -}% -\def\Etoc@setnexttocdepth#1{% - \def\Etoc@tocdepthset{% - \Etoc@tocdepthreset - \edef\Etoc@tocdepthreset {% - \global\c@tocdepth\the\c@tocdepth\space - \global\let\noexpand\Etoc@tocdepthreset\noexpand\@empty - }% - \global\c@tocdepth#1% - \global\let\Etoc@tocdepthset\@empty - }% -}% -\let\Etoc@tocdepthreset\@empty -\let\Etoc@tocdepthset \@empty -\def\etocsetlocaltop #1#{\Etoc@set@localtop}% -\def\Etoc@set@localtop #1{% - \@ifundefined{Etoc@#1@@}% - {\PackageWarning{etoc} - {Unknown sectioning depth #1, \protect\etocsetlocaltop.toc ignored}}% - {\addtocontents {toc} - {\protect\etoc@setlocaltop\expandafter\protect\csname Etoc@#1@@\endcsname}}% -}% -\def\etocimmediatesetlocaltop #1#{\Etoc@set@localtop@immediately}% -\def\Etoc@set@localtop@immediately #1{% - \@ifundefined{Etoc@#1@@}% - {\PackageWarning{etoc} - {Unknown sectioning depth #1, \protect\etocimmediatesetlocaltop.toc ignored}}% - {\begingroup - \let\Etoc@originalwrite\write - \def\write{\immediate\Etoc@originalwrite}% - \addtocontents {toc} - {\protect\etoc@setlocaltop\expandafter\protect - \csname Etoc@#1@@\endcsname}% - \endgroup - }% -}% -\def\etoc@setlocaltop #1{% - \ifnum#1=\Etoc@maxlevel - \Etoc@skipthisonetrue - \else - \Etoc@skipthisonefalse - \global\let\Etoc@level #1% - \global\let\Etoc@virtualtop #1% - \ifEtoc@localtoc - \ifEtoc@stoptoc - \Etoc@skipthisonetrue - \else - \ifEtoc@notactive - \Etoc@skipthisonetrue - \else - \unless\ifnum\Etoc@level>\etoclocaltop - \Etoc@skipthisonetrue - \global\Etoc@stoptoctrue - \fi - \fi - \fi - \fi - \fi - \let\Etoc@next\@empty - \ifEtoc@skipthisone - \else - \ifnum\Etoc@level>\c@tocdepth - \else - \ifEtoc@standardlines - \else - \let\Etoc@next\Etoc@setlocaltop@doendsandbegin - \fi - \fi - \fi - \Etoc@next -}% -\def\Etoc@setlocaltop@doendsandbegin{% - \Etoc@doendsandbegin - \global\Etoc@skipprefixfalse -} -\addtocontents {toc}{\protect\@ifundefined{etoctocstyle}% - {\let\protect\etoc@startlocaltoc\protect\@gobble - \let\protect\etoc@settocdepth\protect\@gobble - \let\protect\etoc@depthtag\protect\@gobble - \let\protect\etoc@setlocaltop\protect\@gobble}{}}% -\def\etocstandardlines {\Etoc@standardlinestrue} -\def\etoctoclines {\Etoc@standardlinesfalse} -\etocdefaultlines -\etocstandardlines -\def\etocstandarddisplaystyle{% - \PackageWarningNoLine{etoc}{% - \string\etocstandarddisplaystyle \on@line\MessageBreak - is deprecated. \space Please use \string\etocclasstocstyle}% -} -\expandafter\def\expandafter\etocclasstocstyle\expandafter{% - \etocclasstocstyle - \Etoc@classstyletrue -} -\def\etocetoclocaltocstyle{\Etoc@etocstyletrue} -\def\etocusertocstyle{\Etoc@etocstylefalse} -\etocclasstocstyle -\etocetoclocaltocstyle -\etocobeytoctocdepth -\etocobeydepthtags -\let\etocbeforetitlehook \@empty -\let\etocaftertitlehook \@empty -\let\etocaftercontentshook \@empty -\let\etocaftertochook \@empty -\def\etockeeporiginaltableofcontents - {\Etoc@keeporiginaltoctrue\let\tableofcontents\etocoriginaltableofcontents}% -\endinput -%% -%% End of file `etoc.sty'. diff --git a/latex/files.tex b/latex/files.tex deleted file mode 100644 index b272f013..00000000 --- a/latex/files.tex +++ /dev/null @@ -1,4 +0,0 @@ -\doxysection{File List} -Here is a list of all documented files with brief descriptions\+:\begin{DoxyCompactList} -\item\contentsline{section}{src/cpp/\mbox{\hyperlink{utils_8h_source}{utils.\+h}} }{\pageref{utils_8h_source}}{} -\end{DoxyCompactList} diff --git a/latex/longtable_doxygen.sty b/latex/longtable_doxygen.sty deleted file mode 100644 index 39a44b88..00000000 --- a/latex/longtable_doxygen.sty +++ /dev/null @@ -1,459 +0,0 @@ -%% -%% This is file `longtable.sty', -%% generated with the docstrip utility. -%% -%% The original source files were: -%% -%% longtable.dtx (with options: `package') -%% -%% This is a generated file. -%% -%% The source is maintained by the LaTeX Project team and bug -%% reports for it can be opened at http://latex-project.org/bugs.html -%% (but please observe conditions on bug reports sent to that address!) -%% -%% Copyright 1993-2016 -%% The LaTeX3 Project and any individual authors listed elsewhere -%% in this file. -%% -%% This file was generated from file(s) of the Standard LaTeX `Tools Bundle'. -%% -------------------------------------------------------------------------- -%% -%% It may be distributed and/or modified under the -%% conditions of the LaTeX Project Public License, either version 1.3c -%% of this license or (at your option) any later version. -%% The latest version of this license is in -%% http://www.latex-project.org/lppl.txt -%% and version 1.3c or later is part of all distributions of LaTeX -%% version 2005/12/01 or later. -%% -%% This file may only be distributed together with a copy of the LaTeX -%% `Tools Bundle'. You may however distribute the LaTeX `Tools Bundle' -%% without such generated files. -%% -%% The list of all files belonging to the LaTeX `Tools Bundle' is -%% given in the file `manifest.txt'. -%% -%% File: longtable.dtx Copyright (C) 1990-2001 David Carlisle -\NeedsTeXFormat{LaTeX2e}[1995/06/01] -\ProvidesPackage{longtable_doxygen} - [2014/10/28 v4.11 Multi-page Table package (DPC) - frozen version for doxygen] -\def\LT@err{\PackageError{longtable}} -\def\LT@warn{\PackageWarning{longtable}} -\def\LT@final@warn{% - \AtEndDocument{% - \LT@warn{Table \@width s have changed. 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The latest version of this license is in -%% http://www.latex-project.org/lppl.txt -%% -%% This work consists of the main source file tabu.dtx -%% and the derived files -%% tabu.sty, tabu.pdf, tabu.ins -%% -%% tabu : Flexible LaTeX tabulars -%% lppl copyright 2010-2011 by FC -%% - -\NeedsTeXFormat{LaTeX2e}[2005/12/01] -\ProvidesPackage{tabu_doxygen}[2011/02/26 v2.8 - flexible LaTeX tabulars (FC), frozen version for doxygen] -\RequirePackage{array}[2008/09/09] -\RequirePackage{varwidth}[2009/03/30] -\AtEndOfPackage{\tabu@AtEnd \let\tabu@AtEnd \@undefined} -\let\tabu@AtEnd\@empty -\def\TMP@EnsureCode#1={% - \edef\tabu@AtEnd{\tabu@AtEnd - \catcode#1 \the\catcode#1}% - \catcode#1=% -}% \TMP@EnsureCode -\TMP@EnsureCode 33 = 12 % ! -\TMP@EnsureCode 58 = 12 % : (for siunitx) -\TMP@EnsureCode124 = 12 % | -\TMP@EnsureCode 36 = 3 % $ = math shift -\TMP@EnsureCode 38 = 4 % & = tab alignment character -\TMP@EnsureCode 32 = 10 % space -\TMP@EnsureCode 94 = 7 % ^ -\TMP@EnsureCode 95 = 8 % _ -%% Constants -------------------------------------------------------- -\newcount \c@taburow \def\thetaburow {\number\c@taburow} -\newcount \tabu@nbcols -\newcount \tabu@cnt -\newcount \tabu@Xcol -\let\tabu@start \@tempcnta -\let\tabu@stop \@tempcntb -\newcount \tabu@alloc \tabu@alloc=\m@ne -\newcount \tabu@nested -\def\tabu@alloc@{\global\advance\tabu@alloc \@ne \tabu@nested\tabu@alloc} -\newdimen \tabu@target -\newdimen \tabu@spreadtarget -\newdimen \tabu@naturalX -\newdimen \tabucolX -\let\tabu@DELTA \@tempdimc -\let\tabu@thick \@tempdima -\let\tabu@on \@tempdimb -\let\tabu@off \@tempdimc -\newdimen \tabu@Xsum -\newdimen \extrarowdepth -\newdimen \abovetabulinesep -\newdimen \belowtabulinesep -\newdimen \tabustrutrule \tabustrutrule \z@ -\newtoks \tabu@thebody -\newtoks \tabu@footnotes -\newsavebox \tabu@box -\newsavebox \tabu@arstrutbox -\newsavebox \tabu@hleads -\newsavebox \tabu@vleads -\newif \iftabu@colortbl -\newif \iftabu@siunitx -\newif \iftabu@measuring -\newif \iftabu@spread -\newif \iftabu@negcoef -\newif \iftabu@everyrow -\def\tabu@everyrowtrue {\global\let\iftabu@everyrow \iftrue} -\def\tabu@everyrowfalse{\global\let\iftabu@everyrow \iffalse} -\newif \iftabu@long -\newif \iftabuscantokens -\def\tabu@rescan {\tabu@verbatim \scantokens } -%% Utilities (for internal usage) ----------------------------------- -\def\tabu@gobblespace #1 {#1} -\def\tabu@gobbletoken #1#2{#1} -\def\tabu@gobbleX{\futurelet\@let@token \tabu@gobblex} -\def\tabu@gobblex{\if ^^J\noexpand\@let@token \expandafter\@gobble - \else\ifx \@sptoken\@let@token - \expandafter\tabu@gobblespace\expandafter\tabu@gobbleX - \fi\fi -}% \tabu@gobblex -\def\tabu@X{^^J} -{\obeyspaces -\global\let\tabu@spxiii= % saves an active space (for \ifx) -\gdef\tabu@@spxiii{ }} -\def\tabu@ifenvir {% only for \multicolumn - \expandafter\tabu@if@nvir\csname\@currenvir\endcsname -}% \tabu@ifenvir -\def\tabu@if@nvir #1{\csname @\ifx\tabu#1first\else - \ifx\longtabu#1first\else - second\fi\fi oftwo\endcsname -}% \tabu@ifenvir -\def\tabu@modulo #1#2{\numexpr\ifnum\numexpr#1=\z@ 0\else #1-(#1-(#2-1)/2)/(#2)*(#2)\fi} -{\catcode`\&=3 -\gdef\tabu@strtrim #1{% #1 = control sequence to trim - \ifodd 1\ifx #1\@empty \else \ifx #1\space \else 0\fi \fi - \let\tabu@c@l@r \@empty \let#1\@empty - \else \expandafter \tabu@trimspaces #1\@nnil - \fi -}% \tabu@strtrim -\gdef\tabu@trimspaces #1\@nnil{\let\tabu@c@l@r=#2\tabu@firstspace .#1& }% -\gdef\tabu@firstspace #1#2#3 &{\tabu@lastspace #2#3&} -\gdef\tabu@lastspace #1{\def #3{#1}% - \ifx #3\tabu@c@l@r \def\tabu@c@l@r{\protect\color{#1}}\expandafter\remove@to@nnil \fi - \tabu@trimspaces #1\@nnil} -}% \catcode -\def\tabu@sanitizearg #1#2{{% - \csname \ifcsname if@safe@actives\endcsname % - @safe@activestrue\else - relax\fi \endcsname - \edef#2{#1}\tabu@strtrim#2\@onelevel@sanitize#2% - \expandafter}\expandafter\def\expandafter#2\expandafter{#2}% -}% \tabu@sanitizearg -\def\tabu@textbar #1{\begingroup \endlinechar\m@ne \scantokens{\def\:{|}}% - \expandafter\endgroup \expandafter#1\:% !!! semi simple group !!! -}% \tabu@textbar -\def\tabu@everyrow@bgroup{\iftabu@everyrow \begingroup \else \noalign{\ifnum0=`}\fi \fi} -\def\tabu@everyrow@egroup{% - \iftabu@everyrow \expandafter \endgroup \the\toks@ - \else \ifnum0=`{\fi}% - \fi -}% \tabu@everyrow@egroup -\def\tabu@arstrut {\global\setbox\@arstrutbox \hbox{\vrule - height \arraystretch \dimexpr\ht\strutbox+\extrarowheight - depth \arraystretch \dimexpr\dp\strutbox+\extrarowdepth - width \z@}% -}% \tabu@arstrut -\def\tabu@rearstrut {% - \@tempdima \arraystretch\dimexpr\ht\strutbox+\extrarowheight \relax - \@tempdimb \arraystretch\dimexpr\dp\strutbox+\extrarowdepth \relax - \ifodd 1\ifdim \ht\@arstrutbox=\@tempdima - \ifdim \dp\@arstrutbox=\@tempdimb 0 \fi\fi - \tabu@mkarstrut - \fi -}% \tabu@rearstrut -\def\tabu@@DBG #1{\ifdim\tabustrutrule>\z@ \color{#1}\fi} -\def\tabu@DBG@arstrut {\global\setbox\@arstrutbox - \hbox to\z@{\hbox to\z@{\hss - {\tabu@DBG{cyan}\vrule - height \arraystretch \dimexpr\ht\strutbox+\extrarowheight - depth \z@ - width \tabustrutrule}\kern-\tabustrutrule - {\tabu@DBG{pink}\vrule - height \z@ - depth \arraystretch \dimexpr\dp\strutbox+\extrarowdepth - width \tabustrutrule}}}% -}% \tabu@DBG@arstrut -\def\tabu@save@decl{\toks\count@ \expandafter{\the\toks\expandafter\count@ - \@nextchar}}% -\def\tabu@savedecl{\ifcat$\d@llarend\else - \let\save@decl \tabu@save@decl \fi % no inversion of tokens in text mode -}% \tabu@savedecl -\def\tabu@finalstrut #1{\unskip\ifhmode\nobreak\fi\vrule height\z@ depth\z@ width\z@} -\newcommand*\tabuDisableCommands {\g@addto@macro\tabu@trialh@@k } -\let\tabu@trialh@@k \@empty -\def\tabu@nowrite #1#{{\afterassignment}\toks@} -\let\tabu@write\write -\let\tabu@immediate\immediate -\def\tabu@WRITE{\begingroup - \def\immediate\write{\aftergroup\endgroup - \tabu@immediate\tabu@write}% -}% \tabu@WRITE -\expandafter\def\expandafter\tabu@GenericError\expandafter{% - \expandafter\tabu@WRITE\GenericError} -\def\tabu@warn{\tabu@WRITE\PackageWarning{tabu}} -\def\tabu@noxfootnote [#1]{\@gobble} -\def\tabu@nocolor #1#{\@gobble} -\newcommand*\tabu@norowcolor[2][]{} -\def\tabu@maybesiunitx #1{\def\tabu@temp{#1}% - \futurelet\@let@token \tabu@m@ybesiunitx} -\def\tabu@m@ybesiunitx #1{\def\tabu@m@ybesiunitx {% - \ifx #1\@let@token \let\tabu@cellleft \@empty \let\tabu@cellright \@empty \fi - \tabu@temp}% \tabu@m@ybesiunitx -}\expandafter\tabu@m@ybesiunitx \csname siunitx_table_collect_begin:Nn\endcsname -\def\tabu@celllalign@def #1{\def\tabu@celllalign{\tabu@maybesiunitx{#1}}}% -%% Fixed vertical spacing adjustment: \extrarowsep ------------------ -\newcommand*\extrarowsep{\edef\tabu@C@extra{\the\numexpr\tabu@C@extra+1}% - \iftabu@everyrow \aftergroup\tabu@Gextra - \else \aftergroup\tabu@n@Gextra - \fi - \@ifnextchar={\tabu@gobbletoken\tabu@extra} \tabu@extra -}% \extrarowsep -\def\tabu@extra {\@ifnextchar_% - {\tabu@gobbletoken{\tabu@setextra\extrarowheight \extrarowdepth}} - {\ifx ^\@let@token \def\tabu@temp{% - \tabu@gobbletoken{\tabu@setextra\extrarowdepth \extrarowheight}}% - \else \let\tabu@temp \@empty - \afterassignment \tabu@setextrasep \extrarowdepth - \fi \tabu@temp}% -}% \tabu@extra -\def\tabu@setextra #1#2{\def\tabu@temp{\tabu@extr@#1#2}\afterassignment\tabu@temp#2} -\def\tabu@extr@ #1#2{\@ifnextchar^% - {\tabu@gobbletoken{\tabu@setextra\extrarowdepth \extrarowheight}} - {\ifx _\@let@token \def\tabu@temp{% - \tabu@gobbletoken{\tabu@setextra\extrarowheight \extrarowdepth}}% - \else \let\tabu@temp \@empty - \tabu@Gsave \tabu@G@extra \tabu@C@extra \extrarowheight \extrarowdepth - \fi \tabu@temp}% -}% \tabu@extr@ -\def\tabu@setextrasep {\extrarowheight=\extrarowdepth - \tabu@Gsave \tabu@G@extra \tabu@C@extra \extrarowheight \extrarowdepth -}% \tabu@setextrasep -\def\tabu@Gextra{\ifx \tabu@G@extra\@empty \else {\tabu@Rextra}\fi} -\def\tabu@n@Gextra{\ifx \tabu@G@extra\@empty \else \noalign{\tabu@Rextra}\fi} -\def\tabu@Rextra{\tabu@Grestore \tabu@G@extra \tabu@C@extra} -\let\tabu@C@extra \z@ -\let\tabu@G@extra \@empty -%% Dynamic vertical spacing adjustment: \tabulinesep ---------------- -\newcommand*\tabulinesep{\edef\tabu@C@linesep{\the\numexpr\tabu@C@linesep+1}% - \iftabu@everyrow \aftergroup\tabu@Glinesep - \else \aftergroup\tabu@n@Glinesep - \fi - \@ifnextchar={\tabu@gobbletoken\tabu@linesep} \tabu@linesep -}% \tabulinesep -\def\tabu@linesep {\@ifnextchar_% - {\tabu@gobbletoken{\tabu@setsep\abovetabulinesep \belowtabulinesep}} - {\ifx ^\@let@token \def\tabu@temp{% - \tabu@gobbletoken{\tabu@setsep\belowtabulinesep \abovetabulinesep}}% - \else \let\tabu@temp \@empty - \afterassignment \tabu@setlinesep \abovetabulinesep - \fi \tabu@temp}% -}% \tabu@linesep -\def\tabu@setsep #1#2{\def\tabu@temp{\tabu@sets@p#1#2}\afterassignment\tabu@temp#2} -\def\tabu@sets@p #1#2{\@ifnextchar^% - {\tabu@gobbletoken{\tabu@setsep\belowtabulinesep \abovetabulinesep}} - {\ifx _\@let@token \def\tabu@temp{% - \tabu@gobbletoken{\tabu@setsep\abovetabulinesep \belowtabulinesep}}% - \else \let\tabu@temp \@empty - \tabu@Gsave \tabu@G@linesep \tabu@C@linesep \abovetabulinesep \belowtabulinesep - \fi \tabu@temp}% -}% \tabu@sets@p -\def\tabu@setlinesep {\belowtabulinesep=\abovetabulinesep - \tabu@Gsave \tabu@G@linesep \tabu@C@linesep \abovetabulinesep \belowtabulinesep -}% \tabu@setlinesep -\def\tabu@Glinesep{\ifx \tabu@G@linesep\@empty \else {\tabu@Rlinesep}\fi} -\def\tabu@n@Glinesep{\ifx \tabu@G@linesep\@empty \else \noalign{\tabu@Rlinesep}\fi} -\def\tabu@Rlinesep{\tabu@Grestore \tabu@G@linesep \tabu@C@linesep} -\let\tabu@C@linesep \z@ -\let\tabu@G@linesep \@empty -%% \global\extrarowsep and \global\tabulinesep ------------------- -\def\tabu@Gsave #1#2#3#4{\xdef#1{#1% - \toks#2{\toks\the\currentgrouplevel{\global#3\the#3\global#4\the#4}}}% -}% \tabu@Gsave -\def\tabu@Grestore#1#2{% - \toks#2{}#1\toks\currentgrouplevel\expandafter{\expandafter}\the\toks#2\relax - \ifcat$\the\toks\currentgrouplevel$\else - \global\let#1\@empty \global\let#2\z@ - \the\toks\currentgrouplevel - \fi -}% \tabu@Grestore -%% Setting code for every row --------------------------------------- -\newcommand*\everyrow{\tabu@everyrow@bgroup - \tabu@start \z@ \tabu@stop \z@ \tabu@evrstartstop -}% \everyrow -\def\tabu@evrstartstop {\@ifnextchar^% - {\afterassignment \tabu@evrstartstop \tabu@stop=}% - {\ifx ^\@let@token - \afterassignment\tabu@evrstartstop \tabu@start=% - \else \afterassignment\tabu@everyr@w \toks@ - \fi}% -}% \tabu@evrstartstop -\def\tabu@everyr@w {% - \xdef\tabu@everyrow{% - \noexpand\tabu@everyrowfalse - \let\noalign \relax - \noexpand\tabu@rowfontreset - \iftabu@colortbl \noexpand\tabu@rc@ \fi % \taburowcolors - \let\noexpand\tabu@docline \noexpand\tabu@docline@evr - \the\toks@ - \noexpand\tabu@evrh@@k - \noexpand\tabu@rearstrut - \global\advance\c@taburow \@ne}% - \iftabu@everyrow \toks@\expandafter - {\expandafter\def\expandafter\tabu@evr@L\expandafter{\the\toks@}\ignorespaces}% - \else \xdef\tabu@evr@G{\the\toks@}% - \fi - \tabu@everyrow@egroup -}% \tabu@everyr@w -\def\tabu@evr {\def\tabu@evrh@@k} % for internal use only -\tabu@evr{} -%% line style and leaders ------------------------------------------- -\newcommand*\newtabulinestyle [1]{% - {\@for \@tempa :=#1\do{\expandafter\tabu@newlinestyle \@tempa==\@nil}}% -}% \newtabulinestyle -\def\tabu@newlinestyle #1=#2=#3\@nil{\tabu@getline {#2}% - \tabu@sanitizearg {#1}\@tempa - \ifodd 1\ifx \@tempa\@empty \ifdefined\tabu@linestyle@ 0 \fi\fi - \global\expandafter\let - \csname tabu@linestyle@\@tempa \endcsname =\tabu@thestyle \fi -}% \tabu@newlinestyle -\newcommand*\tabulinestyle [1]{\tabu@everyrow@bgroup \tabu@getline{#1}% - \iftabu@everyrow - \toks@\expandafter{\expandafter \def \expandafter - \tabu@ls@L\expandafter{\tabu@thestyle}\ignorespaces}% - \gdef\tabu@ls@{\tabu@ls@L}% - \else - \global\let\tabu@ls@G \tabu@thestyle - \gdef\tabu@ls@{\tabu@ls@G}% - \fi - \tabu@everyrow@egroup -}% \tabulinestyle -\newcommand*\taburulecolor{\tabu@everyrow@bgroup \tabu@textbar \tabu@rulecolor} -\def\tabu@rulecolor #1{\toks@{}% - \def\tabu@temp #1##1#1{\tabu@ruledrsc{##1}}\@ifnextchar #1% - \tabu@temp - \tabu@rulearc -}% \tabu@rulecolor -\def\tabu@ruledrsc #1{\edef\tabu@temp{#1}\tabu@strtrim\tabu@temp - \ifx \tabu@temp\@empty \def\tabu@temp{\tabu@rule@drsc@ {}{}}% - \else \edef\tabu@temp{\noexpand\tabu@rule@drsc@ {}{\tabu@temp}}% - \fi - \tabu@temp -}% \tabu@ruledrsc@ -\def\tabu@ruledrsc@ #1#{\tabu@rule@drsc@ {#1}} -\def\tabu@rule@drsc@ #1#2{% - \iftabu@everyrow - \ifx \\#1#2\\\toks@{\let\CT@drsc@ \relax}% - \else \toks@{\def\CT@drsc@{\color #1{#2}}}% - \fi - \else - \ifx \\#1#2\\\global\let\CT@drsc@ \relax - \else \gdef\CT@drsc@{\color #1{#2}}% - \fi - \fi - \tabu@rulearc -}% \tabu@rule@drsc@ -\def\tabu@rulearc #1#{\tabu@rule@arc@ {#1}} -\def\tabu@rule@arc@ #1#2{% - \iftabu@everyrow - \ifx \\#1#2\\\toks@\expandafter{\the\toks@ \def\CT@arc@{}}% - \else \toks@\expandafter{\the\toks@ \def\CT@arc@{\color #1{#2}}}% - \fi - \toks@\expandafter{\the\toks@ - \let\tabu@arc@L \CT@arc@ - \let\tabu@drsc@L \CT@drsc@ - \ignorespaces}% - \else - \ifx \\#1#2\\\gdef\CT@arc@{}% - \else \gdef\CT@arc@{\color #1{#2}}% - \fi - \global\let\tabu@arc@G \CT@arc@ - \global\let\tabu@drsc@G \CT@drsc@ - \fi - \tabu@everyrow@egroup -}% \tabu@rule@arc@ -\def\taburowcolors {\tabu@everyrow@bgroup \@testopt \tabu@rowcolors 1} -\def\tabu@rowcolors [#1]#2#{\tabu@rowc@lors{#1}{#2}} -\def\tabu@rowc@lors #1#2#3{% - \toks@{}\@defaultunits \count@ =\number0#2\relax \@nnil - \@defaultunits \tabu@start =\number0#1\relax \@nnil - \ifnum \count@<\tw@ \count@=\tw@ \fi - \advance\tabu@start \m@ne - \ifnum \tabu@start<\z@ \tabu@start \z@ \fi - \tabu@rowcolorseries #3\in@..\in@ \@nnil -}% \tabu@rowcolors -\def\tabu@rowcolorseries #1..#2\in@ #3\@nnil {% - \ifx \in@#1\relax - \iftabu@everyrow \toks@{\def\tabu@rc@{}\let\tabu@rc@L \tabu@rc@}% - \else \gdef\tabu@rc@{}\global\let\tabu@rc@G \tabu@rc@ - \fi - \else - \ifx \\#2\\\tabu@rowcolorserieserror \fi - \tabu@sanitizearg{#1}\tabu@temp - \tabu@sanitizearg{#2}\@tempa - \advance\count@ \m@ne - \iftabu@everyrow - \def\tabu@rc@ ##1##2##3##4{\def\tabu@rc@{% - \ifnum ##2=\c@taburow - \definecolorseries{tabu@rcseries@\the\tabu@nested}{rgb}{last}{##3}{##4}\fi - \ifnum \c@taburow<##2 \else - \ifnum \tabu@modulo {\c@taburow-##2}{##1+1}=\z@ - \resetcolorseries[{##1}]{tabu@rcseries@\the\tabu@nested}\fi - \xglobal\colorlet{tabu@rc@\the\tabu@nested}{tabu@rcseries@\the\tabu@nested!!+}% - \rowcolor{tabu@rc@\the\tabu@nested}\fi}% - }\edef\x{\noexpand\tabu@rc@ {\the\count@} - {\the\tabu@start} - {\tabu@temp} - {\@tempa}% - }\x - \toks@\expandafter{\expandafter\def\expandafter\tabu@rc@\expandafter{\tabu@rc@}}% - \toks@\expandafter{\the\toks@ \let\tabu@rc@L \tabu@rc@ \ignorespaces}% - \else % inside \noalign - \definecolorseries{tabu@rcseries@\the\tabu@nested}{rgb}{last}{\tabu@temp}{\@tempa}% - \expandafter\resetcolorseries\expandafter[\the\count@]{tabu@rcseries@\the\tabu@nested}% - \xglobal\colorlet{tabu@rc@\the\tabu@nested}{tabu@rcseries@\the\tabu@nested!!+}% - \let\noalign \relax \rowcolor{tabu@rc@\the\tabu@nested}% - \def\tabu@rc@ ##1##2{\gdef\tabu@rc@{% - \ifnum \tabu@modulo {\c@taburow-##2}{##1+1}=\@ne - \resetcolorseries[{##1}]{tabu@rcseries@\the\tabu@nested}\fi - \xglobal\colorlet{tabu@rc@\the\tabu@nested}{tabu@rcseries@\the\tabu@nested!!+}% - \rowcolor{tabu@rc@\the\tabu@nested}}% - }\edef\x{\noexpand\tabu@rc@{\the\count@}{\the\c@taburow}}\x - \global\let\tabu@rc@G \tabu@rc@ - \fi - \fi - \tabu@everyrow@egroup -}% \tabu@rowcolorseries -\tabuDisableCommands {\let\tabu@rc@ \@empty } -\def\tabu@rowcolorserieserror {\PackageError{tabu} - {Invalid syntax for \string\taburowcolors - \MessageBreak Please look at the documentation!}\@ehd -}% \tabu@rowcolorserieserror -\newcommand*\tabureset {% - \tabulinesep=\z@ \extrarowsep=\z@ \extratabsurround=\z@ - \tabulinestyle{}\everyrow{}\taburulecolor||{}\taburowcolors{}% -}% \tabureset -%% Parsing the line styles ------------------------------------------ -\def\tabu@getline #1{\begingroup - \csname \ifcsname if@safe@actives\endcsname % - @safe@activestrue\else - relax\fi \endcsname - \edef\tabu@temp{#1}\tabu@sanitizearg{#1}\@tempa - \let\tabu@thestyle \relax - \ifcsname tabu@linestyle@\@tempa \endcsname - \edef\tabu@thestyle{\endgroup - \def\tabu@thestyle{\expandafter\noexpand - \csname tabu@linestyle@\@tempa\endcsname}% - }\tabu@thestyle - \else \expandafter\tabu@definestyle \tabu@temp \@nil - \fi -}% \tabu@getline -\def\tabu@definestyle #1#2\@nil {\endlinechar \m@ne \makeatletter - \tabu@thick \maxdimen \tabu@on \maxdimen \tabu@off \maxdimen - \let\tabu@c@lon \@undefined \let\tabu@c@loff \@undefined - \ifodd 1\ifcat .#1\else\ifcat\relax #1\else 0\fi\fi % catcode 12 or non expandable cs - \def\tabu@temp{\tabu@getparam{thick}}% - \else \def\tabu@temp{\tabu@getparam{thick}\maxdimen}% - \fi - {% - \let\tabu@ \relax - \def\:{\obeyspaces \tabu@oXIII \tabu@commaXIII \edef\:}% (space active \: happy ;-)) - \scantokens{\:{\tabu@temp #1#2 \tabu@\tabu@}}% - \expandafter}\expandafter - \def\expandafter\:\expandafter{\:}% line spec rewritten now ;-) - \def\;{\def\:}% - \scantokens\expandafter{\expandafter\;\expandafter{\:}}% space is now inactive (catcode 10) - \let\tabu@ \tabu@getcolor \:% all arguments are ready now ;-) - \ifdefined\tabu@c@lon \else \let\tabu@c@lon\@empty \fi - \ifx \tabu@c@lon\@empty \def\tabu@c@lon{\CT@arc@}\fi - \ifdefined\tabu@c@loff \else \let\tabu@c@loff \@empty \fi - \ifdim \tabu@on=\maxdimen \ifdim \tabu@off<\maxdimen - \tabu@on \tabulineon \fi\fi - \ifdim \tabu@off=\maxdimen \ifdim \tabu@on<\maxdimen - \tabu@off \tabulineoff \fi\fi - \ifodd 1\ifdim \tabu@off=\maxdimen \ifdim \tabu@on=\maxdimen 0 \fi\fi - \in@true % - \else \in@false % - \fi - \ifdim\tabu@thick=\maxdimen \def\tabu@thick{\arrayrulewidth}% - \else \edef\tabu@thick{\the\tabu@thick}% - \fi - \edef \tabu@thestyle ##1##2{\endgroup - \def\tabu@thestyle{% - \ifin@ \noexpand\tabu@leadersstyle {\tabu@thick} - {\the\tabu@on}{##1} - {\the\tabu@off}{##2}% - \else \noexpand\tabu@rulesstyle - {##1\vrule width \tabu@thick}% - {##1\leaders \hrule height \tabu@thick \hfil}% - \fi}% - }\expandafter \expandafter - \expandafter \tabu@thestyle \expandafter - \expandafter \expandafter - {\expandafter\tabu@c@lon\expandafter}\expandafter{\tabu@c@loff}% -}% \tabu@definestyle -{\catcode`\O=\active \lccode`\O=`\o \catcode`\,=\active - \lowercase{\gdef\tabu@oXIII {\catcode`\o=\active \let O=\tabu@oxiii}} - \gdef\tabu@commaXIII {\catcode`\,=\active \let ,=\space} -}% \catcode -\def\tabu@oxiii #1{% - \ifcase \ifx n#1\z@ \else - \ifx f#1\@ne\else - \tw@ \fi\fi - \expandafter\tabu@onxiii - \or \expandafter\tabu@ofxiii - \else o% - \fi#1}% -\def\tabu@onxiii #1#2{% - \ifcase \ifx !#2\tw@ \else - \ifcat.\noexpand#2\z@ \else - \ifx \tabu@spxiii#2\@ne\else - \tw@ \fi\fi\fi - \tabu@getparam{on}#2\expandafter\@gobble - \or \expandafter\tabu@onxiii % (space is active) - \else o\expandafter\@firstofone - \fi{#1#2}}% -\def\tabu@ofxiii #1#2{% - \ifx #2f\expandafter\tabu@offxiii - \else o\expandafter\@firstofone - \fi{#1#2}} -\def\tabu@offxiii #1#2{% - \ifcase \ifx !#2\tw@ \else - \ifcat.\noexpand#2\z@ \else - \ifx\tabu@spxiii#2\@ne \else - \tw@ \fi\fi\fi - \tabu@getparam{off}#2\expandafter\@gobble - \or \expandafter\tabu@offxiii % (space is active) - \else o\expandafter\@firstofone - \fi{#1#2}} -\def\tabu@getparam #1{\tabu@ \csname tabu@#1\endcsname=} -\def\tabu@getcolor #1{% \tabu@ <- \tabu@getcolor after \edef - \ifx \tabu@#1\else % no more spec - \let\tabu@theparam=#1\afterassignment \tabu@getc@l@r #1\fi -}% \tabu@getcolor -\def\tabu@getc@l@r #1\tabu@ {% - \def\tabu@temp{#1}\tabu@strtrim \tabu@temp - \ifx \tabu@temp\@empty - \else%\ifcsname \string\color@\tabu@temp \endcsname % if the color exists - \ifx \tabu@theparam \tabu@off \let\tabu@c@loff \tabu@c@l@r - \else \let\tabu@c@lon \tabu@c@l@r - \fi - %\else \tabu@warncolour{\tabu@temp}% - \fi%\fi - \tabu@ % next spec -}% \tabu@getc@l@r -\def\tabu@warncolour #1{\PackageWarning{tabu} - {Color #1 is not defined. Default color used}% -}% \tabu@warncolour -\def\tabu@leadersstyle #1#2#3#4#5{\def\tabu@leaders{{#1}{#2}{#3}{#4}{#5}}% - \ifx \tabu@leaders\tabu@leaders@G \else - \tabu@LEADERS{#1}{#2}{#3}{#4}{#5}\fi -}% \tabu@leadersstyle -\def\tabu@rulesstyle #1#2{\let\tabu@leaders \@undefined - \gdef\tabu@thevrule{#1}\gdef\tabu@thehrule{#2}% -}% \tabu@rulesstyle -%% The leaders boxes ------------------------------------------------ -\def\tabu@LEADERS #1#2#3#4#5{%% width, dash, dash color, gap, gap color - {\let\color \tabu@color % => during trials -> \color = \tabu@nocolor - {% % but the leaders boxes should have colors ! - \def\@therule{\vrule}\def\@thick{height}\def\@length{width}% - \def\@box{\hbox}\def\@unbox{\unhbox}\def\@elt{\wd}% - \def\@skip{\hskip}\def\@ss{\hss}\def\tabu@leads{\tabu@hleads}% - \tabu@l@@d@rs {#1}{#2}{#3}{#4}{#5}% - \global\let\tabu@thehleaders \tabu@theleaders - }% - {% - \def\@therule{\hrule}\def\@thick{width}\def\@length{height}% - \def\@box{\vbox}\def\@unbox{\unvbox}\def\@elt{\ht}% - \def\@skip{\vskip}\def\@ss{\vss}\def\tabu@leads{\tabu@vleads}% - \tabu@l@@d@rs {#1}{#2}{#3}{#4}{#5}% - \global\let\tabu@thevleaders \tabu@theleaders - }% - \gdef\tabu@leaders@G{{#1}{#2}{#3}{#4}{#5}}% - }% -}% \tabu@LEADERS -\def\tabu@therule #1#2{\@therule \@thick#1\@length\dimexpr#2/2 \@depth\z@} -\def\tabu@l@@d@rs #1#2#3#4#5{%% width, dash, dash color, gap, gap color - \global\setbox \tabu@leads=\@box{% - {#3\tabu@therule{#1}{#2}}% - \ifx\\#5\\\@skip#4\else{#5\tabu@therule{#1}{#4*2}}\fi - {#3\tabu@therule{#1}{#2}}}% - \global\setbox\tabu@leads=\@box to\@elt\tabu@leads{\@ss - {#3\tabu@therule{#1}{#2}}\@unbox\tabu@leads}% - \edef\tabu@theleaders ##1{\def\noexpand\tabu@theleaders {% - {##1\tabu@therule{#1}{#2}}% - \xleaders \copy\tabu@leads \@ss - \tabu@therule{0pt}{-#2}{##1\tabu@therule{#1}{#2}}}% - }\tabu@theleaders{#3}% -}% \tabu@l@@d@rs -%% \tabu \endtabu \tabu* \longtabu \endlongtabu \longtabu* ---------- -\newcommand*\tabu {\tabu@longfalse - \ifmmode \def\tabu@ {\array}\def\endtabu {\endarray}% - \else \def\tabu@ {\tabu@tabular}\def\endtabu {\endtabular}\fi - \expandafter\let\csname tabu*\endcsname \tabu - \expandafter\def\csname endtabu*\endcsname{\endtabu}% - \tabu@spreadfalse \tabu@negcoeffalse \tabu@settarget -}% {tabu} -\let\tabu@tabular \tabular % -\expandafter\def\csname tabu*\endcsname{\tabuscantokenstrue \tabu} -\newcommand*\longtabu {\tabu@longtrue - \ifmmode\PackageError{tabu}{longtabu not allowed in math mode}\fi - \def\tabu@{\longtable}\def\endlongtabu{\endlongtable}% - \LTchunksize=\@M - \expandafter\let\csname tabu*\endcsname \tabu - \expandafter\def\csname endlongtabu*\endcsname{\endlongtabu}% - \let\LT@startpbox \tabu@LT@startpbox % \everypar{ array struts } - \tabu@spreadfalse \tabu@negcoeffalse \tabu@settarget -}% {longtabu} -\expandafter\def\csname longtabu*\endcsname{\tabuscantokenstrue \longtabu} -\def\tabu@nolongtabu{\PackageError{tabu} - {longtabu requires the longtable package}\@ehd} -%% Read the target and then : \tabular or \@array ------------------ -\def\tabu@settarget {\futurelet\@let@token \tabu@sett@rget } -\def\tabu@sett@rget {\tabu@target \z@ - \ifcase \ifx \bgroup\@let@token \z@ \else - \ifx \@sptoken\@let@token \@ne \else - \if t\@let@token \tw@ \else - \if s\@let@token \thr@@\else - \z@\fi\fi\fi\fi - \expandafter\tabu@begin - \or \expandafter\tabu@gobblespace\expandafter\tabu@settarget - \or \expandafter\tabu@to - \or \expandafter\tabu@spread - \fi -}% \tabu@sett@rget -\def\tabu@to to{\def\tabu@halignto{to}\tabu@gettarget} -\def\tabu@spread spread{\tabu@spreadtrue\def\tabu@halignto{spread}\tabu@gettarget} -\def\tabu@gettarget {\afterassignment\tabu@linegoaltarget \tabu@target } -\def\tabu@linegoaltarget {\futurelet\tabu@temp \tabu@linegoalt@rget } -\def\tabu@linegoalt@rget {% - \ifx \tabu@temp\LNGL@setlinegoal - \LNGL@setlinegoal \expandafter \@firstoftwo \fi % @gobbles \LNGL@setlinegoal - \tabu@begin -}% \tabu@linegoalt@rget -\def\tabu@begin #1#{% - \iftabu@measuring \expandafter\tabu@nestedmeasure \fi - \ifdim \tabu@target=\z@ \let\tabu@halignto \@empty - \else \edef\tabu@halignto{\tabu@halignto\the\tabu@target}% - \fi - \@testopt \tabu@tabu@ \tabu@aligndefault #1\@nil -}% \tabu@begin -\long\def\tabu@tabu@ [#1]#2\@nil #3{\tabu@setup - \def\tabu@align {#1}\def\tabu@savedpream{\NC@find #3}% - \tabu@ [\tabu@align ]#2{#3\tabu@rewritefirst }% -}% \tabu@tabu@ -\def\tabu@nestedmeasure {% - \ifodd 1\iftabu@spread \else \ifdim\tabu@target=\z@ \else 0 \fi\fi\relax - \tabu@spreadtrue - \else \begingroup \iffalse{\fi \ifnum0=`}\fi - \toks@{}\def\tabu@stack{b}% - \expandafter\tabu@collectbody\expandafter\tabu@quickrule - \expandafter\endgroup - \fi -}% \tabu@nestedmeasure -\def\tabu@quickrule {\indent\vrule height\z@ depth\z@ width\tabu@target} -%% \tabu@setup \tabu@init \tabu@indent -\def\tabu@setup{\tabu@alloc@ - \ifcase \tabu@nested - \ifmmode \else \iftabu@spread\else \ifdim\tabu@target=\z@ - \let\tabu@afterendpar \par - \fi\fi\fi - \def\tabu@aligndefault{c}\tabu@init \tabu@indent - \else % - \def\tabu@aligndefault{t}\let\tabudefaulttarget \linewidth - \fi - \let\tabu@thetarget \tabudefaulttarget \let\tabu@restored \@undefined - \edef\tabu@NC@list{\the\NC@list}\NC@list{\NC@do \tabu@rewritefirst}% - \everycr{}\let\@startpbox \tabu@startpbox % for nested tabu inside longtabu... - \let\@endpbox \tabu@endpbox % idem " " " " " " - \let\@tabarray \tabu@tabarray % idem " " " " " " - \tabu@setcleanup \tabu@setreset -}% \tabu@setup -\def\tabu@init{\tabu@starttimer \tabu@measuringfalse - \edef\tabu@hfuzz {\the\dimexpr\hfuzz+1sp}\global\tabu@footnotes{}% - \let\firsthline \tabu@firsthline \let\lasthline \tabu@lasthline - \let\firstline \tabu@firstline \let\lastline \tabu@lastline - \let\hline \tabu@hline \let\@xhline \tabu@xhline - \let\color \tabu@color \let\@arstrutbox \tabu@arstrutbox - \iftabu@colortbl\else\let\LT@@hline \tabu@LT@@hline \fi - \tabu@trivlist % - \let\@footnotetext \tabu@footnotetext \let\@xfootnotetext \tabu@xfootnotetext - \let\@xfootnote \tabu@xfootnote \let\centering \tabu@centering - \let\raggedright \tabu@raggedright \let\raggedleft \tabu@raggedleft - \let\tabudecimal \tabu@tabudecimal \let\Centering \tabu@Centering - \let\RaggedRight \tabu@RaggedRight \let\RaggedLeft \tabu@RaggedLeft - \let\justifying \tabu@justifying \let\rowfont \tabu@rowfont - \let\fbox \tabu@fbox \let\color@b@x \tabu@color@b@x - \let\tabu@@everycr \everycr \let\tabu@@everypar \everypar - \let\tabu@prepnext@tokORI \prepnext@tok\let\prepnext@tok \tabu@prepnext@tok - \let\tabu@multicolumnORI\multicolumn \let\multicolumn \tabu@multicolumn - \let\tabu@startpbox \@startpbox % for nested tabu inside longtabu pfff !!! - \let\tabu@endpbox \@endpbox % idem " " " " " " " - \let\tabu@tabarray \@tabarray % idem " " " " " " " - \tabu@adl@fix \let\endarray \tabu@endarray % colortbl & arydshln (delarray) - \iftabu@colortbl\CT@everycr\expandafter{\expandafter\iftabu@everyrow \the\CT@everycr \fi}\fi -}% \tabu@init -\def\tabu@indent{% correction for indentation - \ifdim \parindent>\z@\ifx \linewidth\tabudefaulttarget - \everypar\expandafter{% - \the\everypar\everypar\expandafter{\the\everypar}% - \setbox\z@=\lastbox - \ifdim\wd\z@>\z@ \edef\tabu@thetarget - {\the\dimexpr -\wd\z@+\tabudefaulttarget}\fi - \box\z@}% - \fi\fi -}% \tabu@indent -\def\tabu@setcleanup {% saves last global assignments - \ifodd 1\ifmmode \else \iftabu@long \else 0\fi\fi\relax - \def\tabu@aftergroupcleanup{% - \def\tabu@aftergroupcleanup{\aftergroup\tabu@cleanup}}% - \else - \def\tabu@aftergroupcleanup{% - \aftergroup\aftergroup\aftergroup\tabu@cleanup - \let\tabu@aftergroupcleanup \relax}% - \fi - \let\tabu@arc@Gsave \tabu@arc@G - \let\tabu@arc@G \tabu@arc@L % - \let\tabu@drsc@Gsave \tabu@drsc@G - \let\tabu@drsc@G \tabu@drsc@L % - \let\tabu@ls@Gsave \tabu@ls@G - \let\tabu@ls@G \tabu@ls@L % - \let\tabu@rc@Gsave \tabu@rc@G - \let\tabu@rc@G \tabu@rc@L % - \let\tabu@evr@Gsave \tabu@evr@G - \let\tabu@evr@G \tabu@evr@L % - \let\tabu@celllalign@save \tabu@celllalign - \let\tabu@cellralign@save \tabu@cellralign - \let\tabu@cellleft@save \tabu@cellleft - \let\tabu@cellright@save \tabu@cellright - \let\tabu@@celllalign@save \tabu@@celllalign - \let\tabu@@cellralign@save \tabu@@cellralign - \let\tabu@@cellleft@save \tabu@@cellleft - \let\tabu@@cellright@save \tabu@@cellright - \let\tabu@rowfontreset@save \tabu@rowfontreset - \let\tabu@@rowfontreset@save\tabu@@rowfontreset - \let\tabu@rowfontreset \@empty - \edef\tabu@alloc@save {\the\tabu@alloc}% restore at \tabu@reset - \edef\c@taburow@save {\the\c@taburow}% - \edef\tabu@naturalX@save {\the\tabu@naturalX}% - \let\tabu@naturalXmin@save \tabu@naturalXmin - \let\tabu@naturalXmax@save \tabu@naturalXmax - \let\tabu@mkarstrut@save \tabu@mkarstrut - \edef\tabu@clarstrut{% - \extrarowheight \the\dimexpr \ht\@arstrutbox-\ht\strutbox \relax - \extrarowdepth \the\dimexpr \dp\@arstrutbox-\dp\strutbox \relax - \let\noexpand\@arraystretch \@ne \noexpand\tabu@rearstrut}% -}% \tabu@setcleanup -\def\tabu@cleanup {\begingroup - \globaldefs\@ne \tabu@everyrowtrue - \let\tabu@arc@G \tabu@arc@Gsave - \let\CT@arc@ \tabu@arc@G - \let\tabu@drsc@G \tabu@drsc@Gsave - \let\CT@drsc@ \tabu@drsc@G - \let\tabu@ls@G \tabu@ls@Gsave - \let\tabu@ls@ \tabu@ls@G - \let\tabu@rc@G \tabu@rc@Gsave - \let\tabu@rc@ \tabu@rc@G - \let\CT@do@color \relax - \let\tabu@evr@G \tabu@evr@Gsave - \let\tabu@celllalign \tabu@celllalign@save - \let\tabu@cellralign \tabu@cellralign@save - \let\tabu@cellleft \tabu@cellleft@save - \let\tabu@cellright \tabu@cellright@save - \let\tabu@@celllalign \tabu@@celllalign@save - \let\tabu@@cellralign \tabu@@cellralign@save - \let\tabu@@cellleft \tabu@@cellleft@save - \let\tabu@@cellright \tabu@@cellright@save - \let\tabu@rowfontreset \tabu@rowfontreset@save - \let\tabu@@rowfontreset \tabu@@rowfontreset@save - \tabu@naturalX =\tabu@naturalX@save - \let\tabu@naturalXmax \tabu@naturalXmax@save - \let\tabu@naturalXmin \tabu@naturalXmin@save - \let\tabu@mkarstrut \tabu@mkarstrut@save - \c@taburow =\c@taburow@save - \ifcase \tabu@nested \tabu@alloc \m@ne\fi - \endgroup % - \ifcase \tabu@nested - \the\tabu@footnotes \global\tabu@footnotes{}% - \tabu@afterendpar \tabu@elapsedtime - \fi - \tabu@clarstrut - \everyrow\expandafter {\tabu@evr@G}% -}% \tabu@cleanup -\let\tabu@afterendpar \relax -\def\tabu@setreset {% - \edef\tabu@savedparams {% \relax for \tabu@message@save - \ifmmode \col@sep \the\arraycolsep - \else \col@sep \the\tabcolsep \fi \relax - \arrayrulewidth \the\arrayrulewidth \relax - \doublerulesep \the\doublerulesep \relax - \extratabsurround \the\extratabsurround \relax - \extrarowheight \the\extrarowheight \relax - \extrarowdepth \the\extrarowdepth \relax - \abovetabulinesep \the\abovetabulinesep \relax - \belowtabulinesep \the\belowtabulinesep \relax - \def\noexpand\arraystretch{\arraystretch}% - \ifdefined\minrowclearance \minrowclearance\the\minrowclearance\relax\fi}% - \begingroup - \@temptokena\expandafter{\tabu@savedparams}% => only for \savetabu / \usetabu - \ifx \tabu@arc@L\relax \else \tabu@setsave \tabu@arc@L \fi - \ifx \tabu@drsc@L\relax \else \tabu@setsave \tabu@drsc@L \fi - \tabu@setsave \tabu@ls@L \tabu@setsave \tabu@evr@L - \expandafter \endgroup \expandafter - \def\expandafter\tabu@saved@ \expandafter{\the\@temptokena - \let\tabu@arc@G \tabu@arc@L - \let\tabu@drsc@G \tabu@drsc@L - \let\tabu@ls@G \tabu@ls@L - \let\tabu@rc@G \tabu@rc@L - \let\tabu@evr@G \tabu@evr@L}% - \def\tabu@reset{\tabu@savedparams - \tabu@everyrowtrue \c@taburow \z@ - \let\CT@arc@ \tabu@arc@L - \let\CT@drsc@ \tabu@drsc@L - \let\tabu@ls@ \tabu@ls@L - \let\tabu@rc@ \tabu@rc@L - \global\tabu@alloc \tabu@alloc@save - \everyrow\expandafter{\tabu@evr@L}}% -}% \tabu@reset -\def\tabu@setsave #1{\expandafter\tabu@sets@ve #1\@nil{#1}} -\long\def\tabu@sets@ve #1\@nil #2{\@temptokena\expandafter{\the\@temptokena \def#2{#1}}} -%% The Rewriting Process ------------------------------------------- -\def\tabu@newcolumntype #1{% - \expandafter\tabu@new@columntype - \csname NC@find@\string#1\expandafter\endcsname - \csname NC@rewrite@\string#1\endcsname - {#1}% -}% \tabu@newcolumntype -\def\tabu@new@columntype #1#2#3{% - \def#1##1#3{\NC@{##1}}% - \let#2\relax \newcommand*#2% -}% \tabu@new@columntype -\def\tabu@privatecolumntype #1{% - \expandafter\tabu@private@columntype - \csname NC@find@\string#1\expandafter\endcsname - \csname NC@rewrite@\string#1\expandafter\endcsname - \csname tabu@NC@find@\string#1\expandafter\endcsname - \csname tabu@NC@rewrite@\string#1\endcsname - {#1}% -}% \tabu@privatecolumntype -\def\tabu@private@columntype#1#2#3#4{% - \g@addto@macro\tabu@privatecolumns{\let#1#3\let#2#4}% - \tabu@new@columntype#3#4% -}% \tabu@private@columntype -\let\tabu@privatecolumns \@empty -\newcommand*\tabucolumn [1]{\expandafter \def \expandafter - \tabu@highprioritycolumns\expandafter{\tabu@highprioritycolumns - \NC@do #1}}% -\let\tabu@highprioritycolumns \@empty -%% The | ``column'' : rewriting process -------------------------- -\tabu@privatecolumntype |{\tabu@rewritevline} -\newcommand*\tabu@rewritevline[1][]{\tabu@vlinearg{#1}% - \expandafter \NC@find \tabu@rewritten} -\def\tabu@lines #1{% - \ifx|#1\else \tabu@privatecolumntype #1{\tabu@rewritevline}\fi - \NC@list\expandafter{\the\NC@list \NC@do #1}% -}% \tabu@lines@ -\def\tabu@vlinearg #1{% - \ifx\\#1\\\def\tabu@thestyle {\tabu@ls@}% - \else\tabu@getline {#1}% - \fi - \def\tabu@rewritten ##1{\def\tabu@rewritten{!{##1\tabu@thevline}}% - }\expandafter\tabu@rewritten\expandafter{\tabu@thestyle}% - \expandafter \tabu@keepls \tabu@thestyle \@nil -}% \tabu@vlinearg -\def\tabu@keepls #1\@nil{% - \ifcat $\@cdr #1\@nil $% - \ifx \relax#1\else - \ifx \tabu@ls@#1\else - \let#1\relax - \xdef\tabu@mkpreambuffer{\tabu@mkpreambuffer - \tabu@savels\noexpand#1}\fi\fi\fi -}% \tabu@keepls -\def\tabu@thevline {\begingroup - \ifdefined\tabu@leaders - \setbox\@tempboxa=\vtop to\dimexpr - \ht\@arstrutbox+\dp\@arstrutbox{{\tabu@thevleaders}}% - \ht\@tempboxa=\ht\@arstrutbox \dp\@tempboxa=\dp\@arstrutbox - \box\@tempboxa - \else - \tabu@thevrule - \fi \endgroup -}% \tabu@thevline -\def\tabu@savels #1{% - \expandafter\let\csname\string#1\endcsname #1% - \expandafter\def\expandafter\tabu@reset\expandafter{\tabu@reset - \tabu@resetls#1}}% -\def\tabu@resetls #1{\expandafter\let\expandafter#1\csname\string#1\endcsname}% -%% \multicolumn inside tabu environment ----------------------------- -\tabu@newcolumntype \tabu@rewritemulticolumn{% - \aftergroup \tabu@endrewritemulticolumn % after \@mkpream group - \NC@list{\NC@do *}\tabu@textbar \tabu@lines - \tabu@savedecl - \tabu@privatecolumns - \NC@list\expandafter{\the\expandafter\NC@list \tabu@NC@list}% - \let\tabu@savels \relax - \NC@find -}% \tabu@rewritemulticolumn -\def\tabu@endrewritemulticolumn{\gdef\tabu@mkpreambuffer{}\endgroup} -\def\tabu@multicolumn{\tabu@ifenvir \tabu@multic@lumn \tabu@multicolumnORI} -\long\def\tabu@multic@lumn #1#2#3{\multispan{#1}\begingroup - \tabu@everyrowtrue - \NC@list{\NC@do \tabu@rewritemulticolumn}% - \expandafter\@gobbletwo % gobbles \multispan{#1} - \tabu@multicolumnORI{#1}{\tabu@rewritemulticolumn #2}% - {\iftabuscantokens \tabu@rescan \else \expandafter\@firstofone \fi - {#3}}% -}% \tabu@multic@lumn -%% The X column(s): rewriting process ----------------------------- -\tabu@privatecolumntype X[1][]{\begingroup \tabu@siunitx{\endgroup \tabu@rewriteX {#1}}} -\def\tabu@nosiunitx #1{#1{}{}\expandafter \NC@find \tabu@rewritten } -\def\tabu@siunitx #1{\@ifnextchar \bgroup - {\tabu@rewriteX@Ss{#1}} - {\tabu@nosiunitx{#1}}} -\def\tabu@rewriteX@Ss #1#2{\@temptokena{}% - \@defaultunits \let\tabu@temp =#2\relax\@nnil - \ifodd 1\ifx S\tabu@temp \else \ifx s\tabu@temp \else 0 \fi\fi - \def\NC@find{\def\NC@find >####1####2<####3\relax{#1 {####1}{####3}% - }\expandafter\NC@find \the\@temptokena \relax - }\expandafter\NC@rewrite@S \@gobble #2\relax - \else \tabu@siunitxerror - \fi - \expandafter \NC@find \tabu@rewritten -}% \tabu@rewriteX@Ss -\def\tabu@siunitxerror {\PackageError{tabu}{Not a S nor s column ! - \MessageBreak X column can only embed siunitx S or s columns}\@ehd -}% \tabu@siunitxerror -\def\tabu@rewriteX #1#2#3{\tabu@Xarg {#1}{#2}{#3}% - \iftabu@measuring - \else \tabu@measuringtrue % first X column found in the preamble - \let\@halignto \relax \let\tabu@halignto \relax - \iftabu@spread \tabu@spreadtarget \tabu@target \tabu@target \z@ - \else \tabu@spreadtarget \z@ \fi - \ifdim \tabu@target=\z@ - \setlength\tabu@target \tabu@thetarget - \tabu@message{\tabu@message@defaulttarget}% - \else \tabu@message{\tabu@message@target}\fi - \fi -}% \tabu@rewriteX -\def\tabu@rewriteXrestore #1#2#3{\let\@halignto \relax - \def\tabu@rewritten{l}} -\def\tabu@Xarg #1#2#3{% - \advance\tabu@Xcol \@ne \let\tabu@Xlcr \@empty - \let\tabu@Xdisp \@empty \let\tabu@Xmath \@empty - \ifx\\#1\\% - \def\tabu@rewritten{p}\tabucolX \p@ % - \else - \let\tabu@rewritten \@empty \let\tabu@temp \@empty \tabucolX \z@ - \tabu@Xparse {}#1\relax - \fi - \tabu@Xrewritten{#2}{#3}% -}% \tabu@Xarg -\def\tabu@Xparse #1{\futurelet\@let@token \tabu@Xtest} -\expandafter\def\expandafter\tabu@Xparsespace\space{\tabu@Xparse{}} -\def\tabu@Xtest{% - \ifcase \ifx \relax\@let@token \z@ \else - \if ,\@let@token \m@ne\else - \if p\@let@token 1\else - \if m\@let@token 2\else - \if b\@let@token 3\else - \if l\@let@token 4\else - \if c\@let@token 5\else - \if r\@let@token 6\else - \if j\@let@token 7\else - \if L\@let@token 8\else - \if C\@let@token 9\else - \if R\@let@token 10\else - \if J\@let@token 11\else - \ifx \@sptoken\@let@token 12\else - \if .\@let@token 13\else - \if -\@let@token 13\else - \ifcat $\@let@token 14\else - 15\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\relax - \or \tabu@Xtype {p}% - \or \tabu@Xtype {m}% - \or \tabu@Xtype {b}% - \or \tabu@Xalign \raggedright\relax - \or \tabu@Xalign \centering\relax - \or \tabu@Xalign \raggedleft\relax - \or \tabu@Xalign \tabu@justify\relax - \or \tabu@Xalign \RaggedRight\raggedright - \or \tabu@Xalign \Centering\centering - \or \tabu@Xalign \RaggedLeft\raggedleft - \or \tabu@Xalign \justifying\tabu@justify - \or \expandafter \tabu@Xparsespace - \or \expandafter \tabu@Xcoef - \or \expandafter \tabu@Xm@th - \or \tabu@Xcoef{}% - \else\expandafter \tabu@Xparse - \fi -}% \tabu@Xtest -\def\tabu@Xalign #1#2{% - \ifx \tabu@Xlcr\@empty \else \PackageWarning{tabu} - {Duplicate horizontal alignment specification}\fi - \ifdefined#1\def\tabu@Xlcr{#1}\let#1\relax - \else \def\tabu@Xlcr{#2}\let#2\relax\fi - \expandafter\tabu@Xparse -}% \tabu@Xalign -\def\tabu@Xtype #1{% - \ifx \tabu@rewritten\@empty \else \PackageWarning{tabu} - {Duplicate vertical alignment specification}\fi - \def\tabu@rewritten{#1}\expandafter\tabu@Xparse -}% \tabu@Xtype -\def\tabu@Xcoef#1{\edef\tabu@temp{\tabu@temp#1}% - \afterassignment\tabu@Xc@ef \tabu@cnt\number\if-#10\fi -}% \tabu@Xcoef -\def\tabu@Xc@ef{\advance\tabucolX \tabu@temp\the\tabu@cnt\p@ - \tabu@Xparse{}% -}% \tabu@Xc@ef -\def\tabu@Xm@th #1{\futurelet \@let@token \tabu@Xd@sp} -\def\tabu@Xd@sp{\let\tabu@Xmath=$% - \ifx $\@let@token \def\tabu@Xdisp{\displaystyle}% - \expandafter\tabu@Xparse - \else \expandafter\tabu@Xparse\expandafter{\expandafter}% - \fi -}% \tabu@Xd@sp -\def\tabu@Xrewritten {% - \ifx \tabu@rewritten\@empty \def\tabu@rewritten{p}\fi - \ifdim \tabucolX<\z@ \tabu@negcoeftrue - \else\ifdim \tabucolX=\z@ \tabucolX \p@ - \fi\fi - \edef\tabu@temp{{\the\tabu@Xcol}{\tabu@strippt\tabucolX}}% - \edef\tabu@Xcoefs{\tabu@Xcoefs \tabu@ \tabu@temp}% - \edef\tabu@rewritten ##1##2{\def\noexpand\tabu@rewritten{% - >{\tabu@Xlcr \ifx$\tabu@Xmath$\tabu@Xdisp\fi ##1}% - \tabu@rewritten {\tabu@hsize \tabu@temp}% - <{##2\ifx$\tabu@Xmath$\fi}}% - }\tabu@rewritten -}% \tabu@Xrewritten -\def\tabu@hsize #1#2{% - \ifdim #2\p@<\z@ - \ifdim \tabucolX=\maxdimen \tabu@wd{#1}\else - \ifdim \tabu@wd{#1}<-#2\tabucolX \tabu@wd{#1}\else -#2\tabucolX\fi - \fi - \else #2\tabucolX - \fi -}% \tabu@hsize -%% \usetabu and \preamble: rewriting process --------------------- -\tabu@privatecolumntype \usetabu [1]{% - \ifx\\#1\\\tabu@saveerr{}\else - \@ifundefined{tabu@saved@\string#1} - {\tabu@saveerr{#1}} - {\let\tabu@rewriteX \tabu@rewriteXrestore - \csname tabu@saved@\string#1\expandafter\endcsname\expandafter\@ne}% - \fi -}% \NC@rewrite@\usetabu -\tabu@privatecolumntype \preamble [1]{% - \ifx\\#1\\\tabu@saveerr{}\else - \@ifundefined{tabu@saved@\string#1} - {\tabu@saveerr{#1}} - {\csname tabu@saved@\string#1\expandafter\endcsname\expandafter\z@}% - \fi -}% \NC@rewrite@\preamble -%% Controlling the rewriting process ------------------------------- -\tabu@newcolumntype \tabu@rewritefirst{% - \iftabu@long \aftergroup \tabu@longpream % - \else \aftergroup \tabu@pream - \fi - \let\tabu@ \relax \let\tabu@hsize \relax - \let\tabu@Xcoefs \@empty \let\tabu@savels \relax - \tabu@Xcol \z@ \tabu@cnt \tw@ - \gdef\tabu@mkpreambuffer{\tabu@{}}\tabu@measuringfalse - \global\setbox\@arstrutbox \box\@arstrutbox - \NC@list{\NC@do *}\tabu@textbar \tabu@lines - \NC@list\expandafter{\the\NC@list \NC@do X}% - \iftabu@siunitx % - \NC@list\expandafter{\the\NC@list \NC@do S\NC@do s}\fi - \NC@list\expandafter{\the\expandafter\NC@list \tabu@highprioritycolumns}% - \expandafter\def\expandafter\tabu@NC@list\expandafter{% - \the\expandafter\NC@list \tabu@NC@list}% % * | X S - \NC@list\expandafter{\expandafter \NC@do \expandafter\usetabu - \expandafter \NC@do \expandafter\preamble - \the\NC@list \NC@do \tabu@rewritemiddle - \NC@do \tabu@rewritelast}% - \tabu@savedecl - \tabu@privatecolumns - \edef\tabu@prev{\the\@temptokena}\NC@find \tabu@rewritemiddle -}% NC@rewrite@\tabu@rewritefirst -\tabu@newcolumntype \tabu@rewritemiddle{% - \edef\tabu@temp{\the\@temptokena}\NC@find \tabu@rewritelast -}% \NC@rewrite@\tabu@rewritemiddle -\tabu@newcolumntype \tabu@rewritelast{% - \ifx \tabu@temp\tabu@prev \advance\tabu@cnt \m@ne - \NC@list\expandafter{\tabu@NC@list \NC@do \tabu@rewritemiddle - \NC@do \tabu@rewritelast}% - \else \let\tabu@prev\tabu@temp - \fi - \ifcase \tabu@cnt \expandafter\tabu@endrewrite - \else \expandafter\NC@find \expandafter\tabu@rewritemiddle - \fi -}% \NC@rewrite@\tabu@rewritelast -%% Choosing the strategy -------------------------------------------- -\def\tabu@endrewrite {% - \let\tabu@temp \NC@find - \ifx \@arrayright\relax \let\@arrayright \@empty \fi - \count@=% - \ifx \@finalstrut\tabu@finalstrut \z@ % outer in mode 0 print - \iftabu@measuring - \xdef\tabu@mkpreambuffer{\tabu@mkpreambuffer - \tabu@target \csname tabu@\the\tabu@nested.T\endcsname - \tabucolX \csname tabu@\the\tabu@nested.X\endcsname - \edef\@halignto {\ifx\@arrayright\@empty to\tabu@target\fi}}% - \fi - \else\iftabu@measuring 4 % X columns - \xdef\tabu@mkpreambuffer{\tabu@{\tabu@mkpreambuffer - \tabu@target \the\tabu@target - \tabu@spreadtarget \the\tabu@spreadtarget}% - \def\noexpand\tabu@Xcoefs{\tabu@Xcoefs}% - \edef\tabu@halignto{\ifx \@arrayright\@empty to\tabu@target\fi}}% - \let\tabu@Xcoefs \relax - \else\ifcase\tabu@nested \thr@@ % outer, no X - \global\let\tabu@afterendpar \relax - \else \@ne % inner, no X, outer in mode 1 or 2 - \fi - \ifdefined\tabu@usetabu - \else \ifdim\tabu@target=\z@ - \else \let\tabu@temp \tabu@extracolsep - \fi\fi - \fi - \fi - \xdef\tabu@mkpreambuffer{\count@ \the\count@ \tabu@mkpreambuffer}% - \tabu@temp -}% \tabu@endrewrite -\def\tabu@extracolsep{\@defaultunits \expandafter\let - \expandafter\tabu@temp \expandafter=\the\@temptokena \relax\@nnil - \ifx \tabu@temp\@sptoken - \expandafter\tabu@gobblespace \expandafter\tabu@extracolsep - \else - \edef\tabu@temp{\noexpand\NC@find - \if |\noexpand\tabu@temp @% - \else\if !\noexpand\tabu@temp @% - \else !% - \fi\fi - {\noexpand\extracolsep\noexpand\@flushglue}}% - \fi - \tabu@temp -}% \tabu@extrac@lsep -%% Implementing the strategy ---------------------------------------- -\long\def\tabu@pream #1\@preamble {% - \let\tabu@ \tabu@@ \tabu@mkpreambuffer \tabu@aftergroupcleanup - \NC@list\expandafter {\tabu@NC@list}% in case of nesting... - \ifdefined\tabu@usetabu \tabu@usetabu \tabu@target \z@ \fi - \let\tabu@savedpreamble \@preamble - \global\let\tabu@elapsedtime \relax - \tabu@thebody ={#1\tabu@aftergroupcleanup}% - \tabu@thebody =\expandafter{\the\expandafter\tabu@thebody - \@preamble}% - \edef\tabuthepreamble {\the\tabu@thebody}% ( no @ allowed for \scantokens ) - \tabu@select -}% \tabu@pream -\long\def\tabu@longpream #1\LT@bchunk #2\LT@bchunk{% - \let\tabu@ \tabu@@ \tabu@mkpreambuffer \tabu@aftergroupcleanup - \NC@list\expandafter {\tabu@NC@list}% in case of nesting... - \let\tabu@savedpreamble \@preamble - \global\let\tabu@elapsedtime \relax - \tabu@thebody ={#1\LT@bchunk #2\tabu@aftergroupcleanup \LT@bchunk}% - \edef\tabuthepreamble {\the\tabu@thebody}% ( no @ allowed for \scantokens ) - \tabu@select -}% \tabu@longpream -\def\tabu@select {% - \ifnum\tabu@nested>\z@ \tabuscantokensfalse \fi - \ifnum \count@=\@ne \iftabu@measuring \count@=\tw@ \fi\fi - \ifcase \count@ - \global\let\tabu@elapsedtime \relax - \tabu@seteverycr - \expandafter \tabuthepreamble % vertical adjustment (inherited from outer) - \or % exit in vertical measure + struts per cell because no X and outer in mode 3 - \tabu@evr{\tabu@verticalinit}\tabu@celllalign@def{\tabu@verticalmeasure}% - \def\tabu@cellralign{\tabu@verticalspacing}% - \tabu@seteverycr - \expandafter \tabuthepreamble - \or % exit without measure because no X and outer in mode 4 - \tabu@evr{}\tabu@celllalign@def{}\let\tabu@cellralign \@empty - \tabu@seteverycr - \expandafter \tabuthepreamble - \else % needs trials - \tabu@evr{}\tabu@celllalign@def{}\let\tabu@cellralign \@empty - \tabu@savecounters - \expandafter \tabu@setstrategy - \fi -}% \tabu@select -\def\tabu@@ {\gdef\tabu@mkpreambuffer} -%% Protections to set up before trials ------------------------------ -\def\tabu@setstrategy {\begingroup % - \tabu@trialh@@k \tabu@cnt \z@ % number of trials - \hbadness \@M \let\hbadness \@tempcnta - \hfuzz \maxdimen \let\hfuzz \@tempdima - \let\write \tabu@nowrite\let\GenericError \tabu@GenericError - \let\savetabu \@gobble \let\tabudefaulttarget \linewidth - \let\@footnotetext \@gobble \let\@xfootnote \tabu@xfootnote - \let\color \tabu@nocolor\let\rowcolor \tabu@norowcolor - \let\tabu@aftergroupcleanup \relax % only after the last trial - \tabu@mkpreambuffer - \ifnum \count@>\thr@@ \let\@halignto \@empty \tabucolX@init - \def\tabu@lasttry{\m@ne\p@}\fi - \begingroup \iffalse{\fi \ifnum0=`}\fi - \toks@{}\def\tabu@stack{b}\iftabuscantokens \endlinechar=10 \obeyspaces \fi % - \tabu@collectbody \tabu@strategy % -}% \tabu@setstrategy -\def\tabu@savecounters{% - \def\@elt ##1{\csname c@##1\endcsname\the\csname c@##1\endcsname}% - \edef\tabu@clckpt {\begingroup \globaldefs=\@ne \cl@@ckpt \endgroup}\let\@elt \relax -}% \tabu@savecounters -\def\tabucolX@init {% \tabucolX <= \tabu@target / (sum coefs > 0) - \dimen@ \z@ \tabu@Xsum \z@ \tabucolX \z@ \let\tabu@ \tabu@Xinit \tabu@Xcoefs - \ifdim \dimen@>\z@ - \@tempdima \dimexpr \tabu@target *\p@/\dimen@ + \tabu@hfuzz\relax - \ifdim \tabucolX<\@tempdima \tabucolX \@tempdima \fi - \fi -}% \tabucolX@init -\def\tabu@Xinit #1#2{\tabu@Xcol #1 \advance \tabu@Xsum - \ifdim #2\p@>\z@ #2\p@ \advance\dimen@ #2\p@ - \else -#2\p@ \tabu@negcoeftrue - \@tempdima \dimexpr \tabu@target*\p@/\dimexpr-#2\p@\relax \relax - \ifdim \tabucolX<\@tempdima \tabucolX \@tempdima \fi - \tabu@wddef{#1}{0pt}% - \fi -}% \tabu@Xinit -%% Collecting the environment body ---------------------------------- -\long\def\tabu@collectbody #1#2\end #3{% - \edef\tabu@stack{\tabu@pushbegins #2\begin\end\expandafter\@gobble\tabu@stack}% - \ifx \tabu@stack\@empty - \toks@\expandafter{\expandafter\tabu@thebody\expandafter{\the\toks@ #2}% - \def\tabu@end@envir{\end{#3}}% - \iftabuscantokens - \iftabu@long \def\tabu@endenvir {\end{#3}\tabu@gobbleX}% - \else \def\tabu@endenvir {\let\endarray \@empty - \end{#3}\tabu@gobbleX}% - \fi - \else \def\tabu@endenvir {\end{#3}}\fi}% - \let\tabu@collectbody \tabu@endofcollect - \else\def\tabu@temp{#3}% - \ifx \tabu@temp\@empty \toks@\expandafter{\the\toks@ #2\end }% - \else \ifx\tabu@temp\tabu@@spxiii \toks@\expandafter{\the\toks@ #2\end #3}% - \else \ifx\tabu@temp\tabu@X \toks@\expandafter{\the\toks@ #2\end #3}% - \else \toks@\expandafter{\the\toks@ #2\end{#3}}% - \fi\fi\fi - \fi - \tabu@collectbody{#1}% -}% \tabu@collectbody -\long\def\tabu@pushbegins#1\begin#2{\ifx\end#2\else b\expandafter\tabu@pushbegins\fi}% -\def\tabu@endofcollect #1{\ifnum0=`{}\fi - \expandafter\endgroup \the\toks@ #1% -}% \tabu@endofcollect -%% The trials: switching between strategies ------------------------- -\def\tabu@strategy {\relax % stops \count@ assignment ! - \ifcase\count@ % case 0 = print with vertical adjustment (outer is finished) - \expandafter \tabu@endoftrials - \or % case 1 = exit in vertical measure (outer in mode 3) - \expandafter\xdef\csname tabu@\the\tabu@nested.T\endcsname{\the\tabu@target}% - \expandafter\xdef\csname tabu@\the\tabu@nested.X\endcsname{\the\tabucolX}% - \expandafter \tabu@endoftrials - \or % case 2 = exit with a rule replacing the table (outer in mode 4) - \expandafter \tabu@quickend - \or % case 3 = outer is in mode 3 because of no X - \begingroup - \tabu@evr{\tabu@verticalinit}\tabu@celllalign@def{\tabu@verticalmeasure}% - \def\tabu@cellralign{\tabu@verticalspacing}% - \expandafter \tabu@measuring - \else % case 4 = horizontal measure - \begingroup - \global\let\tabu@elapsedtime \tabu@message@etime - \long\def\multicolumn##1##2##3{\multispan{##1}}% - \let\tabu@startpboxORI \@startpbox - \iftabu@spread - \def\tabu@naturalXmax {\z@}% - \let\tabu@naturalXmin \tabu@naturalXmax - \tabu@evr{\global\tabu@naturalX \z@}% - \let\@startpbox \tabu@startpboxmeasure - \else\iftabu@negcoef - \let\@startpbox \tabu@startpboxmeasure - \else \let\@startpbox \tabu@startpboxquick - \fi\fi - \expandafter \tabu@measuring - \fi -}% \tabu@strategy -\def\tabu@measuring{\expandafter \tabu@trial \expandafter - \count@ \the\count@ \tabu@endtrial -}% \tabu@measuring -\def\tabu@trial{\iftabu@long \tabu@longtrial \else \tabu@shorttrial \fi} -\def\tabu@shorttrial {\setbox\tabu@box \hbox\bgroup \tabu@seteverycr - \ifx \tabu@savecounters\relax \else - \let\tabu@savecounters \relax \tabu@clckpt \fi - $\iftabuscantokens \tabu@rescan \else \expandafter\@secondoftwo \fi - \expandafter{\expandafter \tabuthepreamble - \the\tabu@thebody - \csname tabu@adl@endtrial\endcsname - \endarray}$\egroup % got \tabu@box -}% \tabu@shorttrial -\def\tabu@longtrial {\setbox\tabu@box \hbox\bgroup \tabu@seteverycr - \ifx \tabu@savecounters\relax \else - \let\tabu@savecounters \relax \tabu@clckpt \fi - \iftabuscantokens \tabu@rescan \else \expandafter\@secondoftwo \fi - \expandafter{\expandafter \tabuthepreamble - \the\tabu@thebody - \tabuendlongtrial}\egroup % got \tabu@box -}% \tabu@longtrial -\def\tabuendlongtrial{% no @ allowed for \scantokens - \LT@echunk \global\setbox\@ne \hbox{\unhbox\@ne}\kern\wd\@ne - \LT@get@widths -}% \tabuendlongtrial -\def\tabu@adl@endtrial{% - \crcr \noalign{\global\adl@ncol \tabu@nbcols}}% anything global is crap, junky and fails ! -\def\tabu@seteverycr {\tabu@reset - \everycr \expandafter{\the\everycr \tabu@everycr}% - \let\everycr \tabu@noeverycr % -}% \tabu@seteverycr -\def\tabu@noeverycr{{\aftergroup\tabu@restoreeverycr \afterassignment}\toks@} -\def\tabu@restoreeverycr {\let\everycr \tabu@@everycr} -\def\tabu@everycr {\iftabu@everyrow \noalign{\tabu@everyrow}\fi} -\def\tabu@endoftrials {% - \iftabuscantokens \expandafter\@firstoftwo - \else \expandafter\@secondoftwo - \fi - {\expandafter \tabu@closetrialsgroup \expandafter - \tabu@rescan \expandafter{% - \expandafter\tabuthepreamble - \the\expandafter\tabu@thebody - \iftabu@long \else \endarray \fi}} - {\expandafter\tabu@closetrialsgroup \expandafter - \tabuthepreamble - \the\tabu@thebody}% - \tabu@endenvir % Finish ! -}% \tabu@endoftrials -\def\tabu@closetrialsgroup {% - \toks@\expandafter{\tabu@endenvir}% - \edef\tabu@bufferX{\endgroup - \tabucolX \the\tabucolX - \tabu@target \the\tabu@target - \tabu@cnt \the\tabu@cnt - \def\noexpand\tabu@endenvir{\the\toks@}% - %Quid de \@halignto = \tabu@halignto ?? - }% \tabu@bufferX - \tabu@bufferX - \ifcase\tabu@nested % print out (outer in mode 0) - \global\tabu@cnt \tabu@cnt - \tabu@evr{\tabu@verticaldynamicadjustment}% - \tabu@celllalign@def{\everypar{}}\let\tabu@cellralign \@empty - \let\@finalstrut \tabu@finalstrut - \else % vertical measure of nested tabu - \tabu@evr{\tabu@verticalinit}% - \tabu@celllalign@def{\tabu@verticalmeasure}% - \def\tabu@cellralign{\tabu@verticalspacing}% - \fi - \tabu@clckpt \let\@halignto \tabu@halignto - \let\@halignto \@empty - \tabu@seteverycr - \ifdim \tabustrutrule>\z@ \ifnum\tabu@nested=\z@ - \setbox\@arstrutbox \box\voidb@x % force \@arstrutbox to be rebuilt (visible struts) - \fi\fi -}% \tabu@closetrialsgroup -\def\tabu@quickend {\expandafter \endgroup \expandafter - \tabu@target \the\tabu@target \tabu@quickrule - \let\endarray \relax \tabu@endenvir -}% \tabu@quickend -\def\tabu@endtrial {\relax % stops \count@ assignment ! - \ifcase \count@ \tabu@err % case 0 = impossible here - \or \tabu@err % case 1 = impossible here - \or \tabu@err % case 2 = impossible here - \or % case 3 = outer goes into mode 0 - \def\tabu@bufferX{\endgroup}\count@ \z@ - \else % case 4 = outer goes into mode 3 - \iftabu@spread \tabu@spreadarith % inner into mode 1 (outer in mode 3) - \else \tabu@arith % or 2 (outer in mode 4) - \fi - \count@=% - \ifcase\tabu@nested \thr@@ % outer goes into mode 3 - \else\iftabu@measuring \tw@ % outer is in mode 4 - \else \@ne % outer is in mode 3 - \fi\fi - \edef\tabu@bufferX{\endgroup - \tabucolX \the\tabucolX - \tabu@target \the\tabu@target}% - \fi - \expandafter \tabu@bufferX \expandafter - \count@ \the\count@ \tabu@strategy -}% \tabu@endtrial -\def\tabu@err{\errmessage{(tabu) Internal impossible error! (\count@=\the\count@)}} -%% The algorithms: compute the widths / stop or go on --------------- -\def\tabu@arithnegcoef {% - \@tempdima \z@ \dimen@ \z@ \let\tabu@ \tabu@arith@negcoef \tabu@Xcoefs -}% \tabu@arithnegcoef -\def\tabu@arith@negcoef #1#2{% - \ifdim #2\p@>\z@ \advance\dimen@ #2\p@ % saturated by definition - \advance\@tempdima #2\tabucolX - \else - \ifdim -#2\tabucolX <\tabu@wd{#1}% c_i X < natural width <= \tabu@target-> saturated - \advance\dimen@ -#2\p@ - \advance\@tempdima -#2\tabucolX - \else - \advance\@tempdima \tabu@wd{#1}% natural width <= c_i X => neutralised - \ifdim \tabu@wd{#1}<\tabu@target \else % neutralised - \advance\dimen@ -#2\p@ % saturated (natural width = tabu@target) - \fi - \fi - \fi -}% \tabu@arith@negcoef -\def\tabu@givespace #1#2{% here \tabu@DELTA < \z@ - \ifdim \@tempdima=\z@ - \tabu@wddef{#1}{\the\dimexpr -\tabu@DELTA*\p@/\tabu@Xsum}% - \else - \tabu@wddef{#1}{\the\dimexpr \tabu@hsize{#1}{#2} - *(\p@ -\tabu@DELTA*\p@/\@tempdima)/\p@\relax}% - \fi -}% \tabu@givespace -\def\tabu@arith {\advance\tabu@cnt \@ne - \ifnum \tabu@cnt=\@ne \tabu@message{\tabu@titles}\fi - \tabu@arithnegcoef - \@tempdimb \dimexpr \wd\tabu@box -\@tempdima \relax % - \tabu@DELTA = \dimexpr \wd\tabu@box - \tabu@target \relax - \tabu@message{\tabu@message@arith}% - \ifdim \tabu@DELTA <\tabu@hfuzz - \ifdim \tabu@DELTA<\z@ % wd (tabu)<\tabu@target ? - \let\tabu@ \tabu@givespace \tabu@Xcoefs - \advance\@tempdima \@tempdimb \advance\@tempdima -\tabu@DELTA % for message - \else % already converged: nothing to do but nearly impossible... - \fi - \tabucolX \maxdimen - \tabu@measuringfalse - \else % need for narrower X columns - \tabucolX =\dimexpr (\@tempdima -\tabu@DELTA) *\p@/\tabu@Xsum \relax - \tabu@measuringtrue - \@whilesw \iftabu@measuring\fi {% - \advance\tabu@cnt \@ne - \tabu@arithnegcoef - \tabu@DELTA =\dimexpr \@tempdima+\@tempdimb -\tabu@target \relax % always < 0 here - \tabu@message{\tabu@header - \tabu@msgalign \tabucolX { }{ }{ }{ }{ }\@@ - \tabu@msgalign \@tempdima+\@tempdimb { }{ }{ }{ }{ }\@@ - \tabu@msgalign \tabu@target { }{ }{ }{ }{ }\@@ - \tabu@msgalign@PT \dimen@ { }{}{}{}{}{}{}\@@ - \ifdim -\tabu@DELTA<\tabu@hfuzz \tabu@spaces target ok\else - \tabu@msgalign \dimexpr -\tabu@DELTA *\p@/\dimen@ {}{}{}{}{}\@@ - \fi}% - \ifdim -\tabu@DELTA<\tabu@hfuzz - \advance\@tempdima \@tempdimb % for message - \tabu@measuringfalse - \else - \advance\tabucolX \dimexpr -\tabu@DELTA *\p@/\dimen@ \relax - \fi - }% - \fi - \tabu@message{\tabu@message@reached}% - \edef\tabu@bufferX{\endgroup \tabu@cnt \the\tabu@cnt - \tabucolX \the\tabucolX - \tabu@target \the\tabu@target}% -}% \tabu@arith -\def\tabu@spreadarith {% - \dimen@ \z@ \@tempdima \tabu@naturalXmax \let\tabu@ \tabu@spread@arith \tabu@Xcoefs - \edef\tabu@naturalXmin {\the\dimexpr\tabu@naturalXmin*\dimen@/\p@}% - \@tempdimc =\dimexpr \wd\tabu@box -\tabu@naturalXmax+\tabu@naturalXmin \relax - \iftabu@measuring - \tabu@target =\dimexpr \@tempdimc+\tabu@spreadtarget \relax - \edef\tabu@bufferX{\endgroup \tabucolX \the\tabucolX \tabu@target\the\tabu@target}% - \else - \tabu@message{\tabu@message@spreadarith}% - \ifdim \dimexpr \@tempdimc+\tabu@spreadtarget >\tabu@target - \tabu@message{(tabu) spread - \ifdim \@tempdimc>\tabu@target useless here: default target used% - \else too large: reduced to fit default target\fi.}% - \else - \tabu@target =\dimexpr \@tempdimc+\tabu@spreadtarget \relax - \tabu@message{(tabu) spread: New target set to \the\tabu@target^^J}% - \fi - \begingroup \let\tabu@wddef \@gobbletwo - \@tempdimb \@tempdima - \tabucolX@init - \tabu@arithnegcoef - \wd\tabu@box =\dimexpr \wd\tabu@box +\@tempdima-\@tempdimb \relax - \expandafter\endgroup \expandafter\tabucolX \the\tabucolX - \tabu@arith - \fi -}% \tabu@spreadarith -\def\tabu@spread@arith #1#2{% - \ifdim #2\p@>\z@ \advance\dimen@ #2\p@ - \else \advance\@tempdima \tabu@wd{#1}\relax - \fi -}% \tabu@spread@arith -%% Reporting in the .log file --------------------------------------- -\def\tabu@message@defaulttarget{% - \ifnum\tabu@nested=\z@^^J(tabu) Default target: - \ifx\tabudefaulttarget\linewidth \string\linewidth - \ifdim \tabu@thetarget=\linewidth \else - -\the\dimexpr\linewidth-\tabu@thetarget\fi = - \else\ifx\tabudefaulttarget\linegoal\string\linegoal= - \fi\fi - \else (tabu) Default target (nested): \fi - \the\tabu@target \on@line - \ifnum\tabu@nested=\z@ , page \the\c@page\fi} -\def\tabu@message@target {^^J(tabu) Target specified: - \the\tabu@target \on@line, page \the\c@page} -\def\tabu@message@arith {\tabu@header - \tabu@msgalign \tabucolX { }{ }{ }{ }{ }\@@ - \tabu@msgalign \wd\tabu@box { }{ }{ }{ }{ }\@@ - \tabu@msgalign \tabu@target { }{ }{ }{ }{ }\@@ - \tabu@msgalign@PT \dimen@ { }{}{}{}{}{}{}\@@ - \ifdim \tabu@DELTA<\tabu@hfuzz giving space\else - \tabu@msgalign \dimexpr (\@tempdima-\tabu@DELTA) *\p@/\tabu@Xsum -\tabucolX {}{}{}{}{}\@@ - \fi -}% \tabu@message@arith -\def\tabu@message@spreadarith {\tabu@spreadheader - \tabu@msgalign \tabu@spreadtarget { }{ }{ }{ }{}\@@ - \tabu@msgalign \wd\tabu@box { }{ }{ }{ }{}\@@ - \tabu@msgalign -\tabu@naturalXmax { }{}{}{}{}\@@ - \tabu@msgalign \tabu@naturalXmin { }{ }{ }{ }{}\@@ - \tabu@msgalign \ifdim \dimexpr\@tempdimc>\tabu@target \tabu@target - \else \@tempdimc+\tabu@spreadtarget \fi - {}{}{}{}{}\@@} -\def\tabu@message@negcoef #1#2{ - \tabu@spaces\tabu@spaces\space * #1. X[\rem@pt#2]: - \space width = \tabu@wd {#1} - \expandafter\string\csname tabu@\the\tabu@nested.W\number#1\endcsname - \ifdim -\tabu@pt#2\tabucolX<\tabu@target - < \number-\rem@pt#2 X - = \the\dimexpr -\tabu@pt#2\tabucolX \relax - \else - <= \the\tabu@target\space < \number-\rem@pt#2 X\fi} -\def\tabu@message@reached{\tabu@header - ******* Reached Target: - hfuzz = \tabu@hfuzz\on@line\space *******} -\def\tabu@message@etime{\edef\tabu@stoptime{\the\pdfelapsedtime}% - \tabu@message{(tabu)\tabu@spaces Time elapsed during measure: - \the\numexpr(\tabu@stoptime-\tabu@starttime-32767)/65536\relax sec - \the\numexpr\numexpr(\tabu@stoptime-\tabu@starttime) - -\numexpr(\tabu@stoptime-\tabu@starttime-32767)/65536\relax*65536\relax - *1000/65536\relax ms \tabu@spaces(\the\tabu@cnt\space - cycle\ifnum\tabu@cnt>\@ne s\fi)^^J^^J}} -\def\tabu@message@verticalsp {% - \ifdim \@tempdima>\tabu@ht - \ifdim \@tempdimb>\tabu@dp - \expandafter\expandafter\expandafter\string\tabu@ht = - \tabu@msgalign \@tempdima { }{ }{ }{ }{ }\@@ - \expandafter\expandafter\expandafter\string\tabu@dp = - \tabu@msgalign \@tempdimb { }{ }{ }{ }{ }\@@^^J% - \else - \expandafter\expandafter\expandafter\string\tabu@ht = - \tabu@msgalign \@tempdima { }{ }{ }{ }{ }\@@^^J% - \fi - \else\ifdim \@tempdimb>\tabu@dp - \tabu@spaces\tabu@spaces\tabu@spaces - \expandafter\expandafter\expandafter\string\tabu@dp = - \tabu@msgalign \@tempdimb { }{ }{ }{ }{ }\@@^^J\fi - \fi -}% \tabu@message@verticalsp -\edef\tabu@spaces{\@spaces} -\def\tabu@strippt{\expandafter\tabu@pt\the} -{\@makeother\P \@makeother\T\lowercase{\gdef\tabu@pt #1PT{#1}}} -\def\tabu@msgalign{\expandafter\tabu@msg@align\the\dimexpr} -\def\tabu@msgalign@PT{\expandafter\tabu@msg@align\romannumeral-`\0\tabu@strippt} -\def\do #1{% - \def\tabu@msg@align##1.##2##3##4##5##6##7##8##9\@@{% - \ifnum##1<10 #1 #1\else - \ifnum##1<100 #1 \else - \ifnum##1<\@m #1\fi\fi\fi - ##1.##2##3##4##5##6##7##8#1}% - \def\tabu@header{(tabu) \ifnum\tabu@cnt<10 #1\fi\the\tabu@cnt) }% - \def\tabu@titles{\ifnum \tabu@nested=\z@ - (tabu) Try#1 #1 tabu X #1 #1 #1tabu Width #1 #1 Target - #1 #1 #1 Coefs #1 #1 #1 Update^^J\fi}% - \def\tabu@spreadheader{% - (tabu) Try#1 #1 Spread #1 #1 tabu Width #1 #1 #1 Nat. X #1 #1 #1 #1Nat. Min. - #1 New Target^^J% - (tabu) sprd} - \def\tabu@message@save {\begingroup - \def\x ####1{\tabu@msg@align ####1{ }{ }{ }{ }{}\@@} - \def\z ####1{\expandafter\x\expandafter{\romannumeral-`\0\tabu@strippt - \dimexpr####1\p@{ }{ }}}% - \let\color \relax \def\tabu@rulesstyle ####1####2{\detokenize{####1}}% - \let\CT@arc@ \relax \let\@preamble \@gobble - \let\tabu@savedpream \@firstofone - \let\tabu@savedparams \@firstofone - \def\tabu@target ####1\relax {(tabu) target #1 #1 #1 #1 #1 = \x{####1}^^J}% - \def\tabucolX ####1\relax {(tabu) X columns width#1 = \x{####1}^^J}% - \def\tabu@nbcols ####1\relax {(tabu) Number of columns: \z{####1}^^J}% - \def\tabu@aligndefault ####1{(tabu) Default alignment: #1 #1 ####1^^J}% - \def\col@sep ####1\relax {(tabu) column sep #1 #1 #1 = \x{####1}^^J}% - \def\arrayrulewidth ####1\relax{(tabu) arrayrulewidth #1 = \x{####1}}% - \def\doublerulesep ####1\relax { doublerulesep = \x{####1}^^J}% - \def\extratabsurround####1\relax{(tabu) extratabsurround = \x{####1}^^J}% - \def\extrarowheight ####1\relax{(tabu) extrarowheight #1 = \x{####1}}% - \def\extrarowdepth ####1\relax {extrarowdepth = \x{####1}^^J}% - \def\abovetabulinesep####1\relax{(tabu) abovetabulinesep=\x{####1} }% - \def\belowtabulinesep####1\relax{ belowtabulinesep=\x{####1}^^J}% - \def\arraystretch ####1{(tabu) arraystretch #1 #1 = \z{####1}^^J}% - \def\minrowclearance####1\relax{(tabu) minrowclearance #1 = \x{####1}^^J}% - \def\tabu@arc@L ####1{(tabu) taburulecolor #1 #1 = ####1^^J}% - \def\tabu@drsc@L ####1{(tabu) tabudoublerulecolor= ####1^^J}% - \def\tabu@evr@L ####1{(tabu) everyrow #1 #1 #1 #1 = \detokenize{####1}^^J}% - \def\tabu@ls@L ####1{(tabu) line style = \detokenize{####1}^^J}% - \def\NC@find ####1\@nil{(tabu) tabu preamble#1 #1 = \detokenize{####1}^^J}% - \def\tabu@wddef####1####2{(tabu) Natural width ####1 = \x{####2}^^J}% - \let\edef \@gobbletwo \let\def \@empty \let\let \@gobbletwo - \tabu@message{% - (tabu) \string\savetabu{\tabu@temp}: \on@line^^J% - \tabu@usetabu \@nil^^J}% - \endgroup} -}\do{ } -%% Measuring the natural width (varwidth) - store the results ------- -\def\tabu@startpboxmeasure #1{\bgroup % entering \vtop - \edef\tabu@temp{\expandafter\@secondoftwo \ifx\tabu@hsize #1\else\relax\fi}% - \ifodd 1\ifx \tabu@temp\@empty 0 \else % starts with \tabu@hsize ? - \iftabu@spread \else % if spread -> measure - \ifdim \tabu@temp\p@>\z@ 0 \fi\fi\fi% if coef>0 -> do not measure - \let\@startpbox \tabu@startpboxORI % restore immediately (nesting) - \tabu@measuringtrue % for the quick option... - \tabu@Xcol =\expandafter\@firstoftwo\ifx\tabu@hsize #1\fi - \ifdim \tabu@temp\p@>\z@ \ifdim \tabu@temp\tabucolX<\tabu@target - \tabu@target=\tabu@temp\tabucolX \fi\fi - \setbox\tabu@box \hbox \bgroup - \begin{varwidth}\tabu@target - \let\FV@ListProcessLine \tabu@FV@ListProcessLine % \hbox to natural width... - \narrowragged \arraybackslash \parfillskip \@flushglue - \ifdefined\pdfadjustspacing \pdfadjustspacing\z@ \fi - \bgroup \aftergroup\tabu@endpboxmeasure - \ifdefined \cellspacetoplimit \tabu@cellspacepatch \fi - \else \expandafter\@gobble - \tabu@startpboxquick{#1}% \@gobble \bgroup - \fi -}% \tabu@startpboxmeasure -\def\tabu@cellspacepatch{\def\bcolumn##1\@nil{}\let\ecolumn\@empty - \bgroup\color@begingroup} -\def\tabu@endpboxmeasure {% - \@finalstrut \@arstrutbox - \end{varwidth}\egroup % - \ifdim \tabu@temp\p@ <\z@ % neg coef - \ifdim \tabu@wd\tabu@Xcol <\wd\tabu@box - \tabu@wddef\tabu@Xcol {\the\wd\tabu@box}% - \tabu@debug{\tabu@message@endpboxmeasure}% - \fi - \else % spread coef>0 - \global\advance \tabu@naturalX \wd\tabu@box - \@tempdima =\dimexpr \wd\tabu@box *\p@/\dimexpr \tabu@temp\p@\relax \relax - \ifdim \tabu@naturalXmax <\tabu@naturalX - \xdef\tabu@naturalXmax {\the\tabu@naturalX}\fi - \ifdim \tabu@naturalXmin <\@tempdima - \xdef\tabu@naturalXmin {\the\@tempdima}\fi - \fi - \box\tabu@box \egroup % end of \vtop (measure) restore \tabu@target -}% \tabu@endpboxmeasure -\def\tabu@wddef #1{\expandafter\xdef - \csname tabu@\the\tabu@nested.W\number#1\endcsname} -\def\tabu@wd #1{\csname tabu@\the\tabu@nested.W\number#1\endcsname} -\def\tabu@message@endpboxmeasure{\tabu@spaces\tabu@spaces<-> % <-> save natural wd - \the\tabu@Xcol. X[\tabu@temp]: - target = \the\tabucolX \space - \expandafter\expandafter\expandafter\string\tabu@wd\tabu@Xcol - =\tabu@wd\tabu@Xcol -}% \tabu@message@endpboxmeasure -\def\tabu@startpboxquick {\bgroup - \let\@startpbox \tabu@startpboxORI % restore immediately - \let\tabu \tabu@quick % \begin is expanded before... - \expandafter\@gobble \@startpbox % gobbles \bgroup -}% \tabu@startpboxquick -\def\tabu@quick {\begingroup \iffalse{\fi \ifnum0=`}\fi - \toks@{}\def\tabu@stack{b}\tabu@collectbody \tabu@endquick -}% \tabu@quick -\def\tabu@endquick {% - \ifodd 1\ifx\tabu@end@envir\tabu@endtabu \else - \ifx\tabu@end@envir\tabu@endtabus \else 0\fi\fi\relax - \endgroup - \else \let\endtabu \relax - \tabu@end@envir - \fi -}% \tabu@quick -\def\tabu@endtabu {\end{tabu}} -\def\tabu@endtabus {\end{tabu*}} -%% Measuring the heights and depths - store the results ------------- -\def\tabu@verticalmeasure{\everypar{}% - \ifnum \currentgrouptype>12 % 14=semi-simple, 15=math shift group - \setbox\tabu@box =\hbox\bgroup - \let\tabu@verticalspacing \tabu@verticalsp@lcr - \d@llarbegin % after \hbox ... - \else - \edef\tabu@temp{\ifnum\currentgrouptype=5\vtop - \else\ifnum\currentgrouptype=12\vcenter - \else\vbox\fi\fi}% - \setbox\tabu@box \hbox\bgroup$\tabu@temp \bgroup - \let\tabu@verticalspacing \tabu@verticalsp@pmb - \fi -}% \tabu@verticalmeasure -\def\tabu@verticalsp@lcr{% - \d@llarend \egroup % - \@tempdima \dimexpr \ht\tabu@box+\abovetabulinesep - \@tempdimb \dimexpr \dp\tabu@box+\belowtabulinesep \relax - \ifdim\tabustrutrule>\z@ \tabu@debug{\tabu@message@verticalsp}\fi - \ifdim \tabu@ht<\@tempdima \tabu@htdef{\the\@tempdima}\fi - \ifdim \tabu@dp<\@tempdimb \tabu@dpdef{\the\@tempdimb}\fi - \noindent\vrule height\@tempdima depth\@tempdimb -}% \tabu@verticalsp@lcr -\def\tabu@verticalsp@pmb{% inserts struts as needed - \par \expandafter\egroup - \expandafter$\expandafter - \egroup \expandafter - \@tempdimc \the\prevdepth - \@tempdima \dimexpr \ht\tabu@box+\abovetabulinesep - \@tempdimb \dimexpr \dp\tabu@box+\belowtabulinesep \relax - \ifdim\tabustrutrule>\z@ \tabu@debug{\tabu@message@verticalsp}\fi - \ifdim \tabu@ht<\@tempdima \tabu@htdef{\the\@tempdima}\fi - \ifdim \tabu@dp<\@tempdimb \tabu@dpdef{\the\@tempdimb}\fi - \let\@finalstrut \@gobble - \hrule height\@tempdima depth\@tempdimb width\hsize -%% \box\tabu@box -}% \tabu@verticalsp@pmb - -\def\tabu@verticalinit{% - \ifnum \c@taburow=\z@ \tabu@rearstrut \fi % after \tabu@reset ! - \advance\c@taburow \@ne - \tabu@htdef{\the\ht\@arstrutbox}\tabu@dpdef{\the\dp\@arstrutbox}% - \advance\c@taburow \m@ne -}% \tabu@verticalinit -\def\tabu@htdef {\expandafter\xdef \csname tabu@\the\tabu@nested.H\the\c@taburow\endcsname} -\def\tabu@ht {\csname tabu@\the\tabu@nested.H\the\c@taburow\endcsname} -\def\tabu@dpdef {\expandafter\xdef \csname tabu@\the\tabu@nested.D\the\c@taburow\endcsname} -\def\tabu@dp {\csname tabu@\the\tabu@nested.D\the\c@taburow\endcsname} -\def\tabu@verticaldynamicadjustment {% - \advance\c@taburow \@ne - \extrarowheight \dimexpr\tabu@ht - \ht\strutbox - \extrarowdepth \dimexpr\tabu@dp - \dp\strutbox - \let\arraystretch \@empty - \advance\c@taburow \m@ne -}% \tabu@verticaldynamicadjustment -\def\tabuphantomline{\crcr \noalign{% - {\globaldefs \@ne - \setbox\@arstrutbox \box\voidb@x - \let\tabu@@celllalign \tabu@celllalign - \let\tabu@@cellralign \tabu@cellralign - \let\tabu@@cellleft \tabu@cellleft - \let\tabu@@cellright \tabu@cellright - \let\tabu@@thevline \tabu@thevline - \let\tabu@celllalign \@empty - \let\tabu@cellralign \@empty - \let\tabu@cellright \@empty - \let\tabu@cellleft \@empty - \let\tabu@thevline \relax}% - \edef\tabu@temp{\tabu@multispan \tabu@nbcols{\noindent &}}% - \toks@\expandafter{\tabu@temp \noindent\tabu@everyrowfalse \cr - \noalign{\tabu@rearstrut - {\globaldefs\@ne - \let\tabu@celllalign \tabu@@celllalign - \let\tabu@cellralign \tabu@@cellralign - \let\tabu@cellleft \tabu@@cellleft - \let\tabu@cellright \tabu@@cellright - \let\tabu@thevline \tabu@@thevline}}}% - \expandafter}\the\toks@ -}% \tabuphantomline -%% \firsthline and \lasthline corrections --------------------------- -\def\tabu@firstline {\tabu@hlineAZ \tabu@firsthlinecorrection {}} -\def\tabu@firsthline{\tabu@hlineAZ \tabu@firsthlinecorrection \hline} -\def\tabu@lastline {\tabu@hlineAZ \tabu@lasthlinecorrection {}} -\def\tabu@lasthline {\tabu@hlineAZ \tabu@lasthlinecorrection \hline} -\def\tabu@hline {% replaces \hline if no colortbl (see \AtBeginDocument) - \noalign{\ifnum0=`}\fi - {\CT@arc@\hrule height\arrayrulewidth}% - \futurelet \tabu@temp \tabu@xhline -}% \tabu@hline -\def\tabu@xhline{% - \ifx \tabu@temp \hline - {\ifx \CT@drsc@\relax \vskip - \else\ifx \CT@drsc@\@empty \vskip - \else \CT@drsc@\hrule height - \fi\fi - \doublerulesep}% - \fi - \ifnum0=`{\fi}% -}% \tabu@xhline -\def\tabu@hlineAZ #1#2{\noalign{\ifnum0=`}\fi \dimen@ \z@ \count@ \z@ - \toks@{}\def\tabu@hlinecorrection{#1}\def\tabu@temp{#2}% - \tabu@hlineAZsurround -}% \tabu@hlineAZ -\newcommand*\tabu@hlineAZsurround[1][\extratabsurround]{% - \extratabsurround #1\let\tabucline \tabucline@scan - \let\hline \tabu@hlinescan \let\firsthline \hline - \let\cline \tabu@clinescan \let\lasthline \hline - \expandafter \futurelet \expandafter \tabu@temp - \expandafter \tabu@nexthlineAZ \tabu@temp -}% \tabu@hlineAZsurround -\def\tabu@hlinescan {\tabu@thick \arrayrulewidth \tabu@xhlineAZ \hline} -\def\tabu@clinescan #1{\tabu@thick \arrayrulewidth \tabu@xhlineAZ {\cline{#1}}} -\def\tabucline@scan{\@testopt \tabucline@sc@n {}} -\def\tabucline@sc@n #1[#2]{\tabu@xhlineAZ {\tabucline[{#1}]{#2}}} -\def\tabu@nexthlineAZ{% - \ifx \tabu@temp\hline \else - \ifx \tabu@temp\cline \else - \ifx \tabu@temp\tabucline \else - \tabu@hlinecorrection - \fi\fi\fi -}% \tabu@nexthlineAZ -\def\tabu@xhlineAZ #1{% - \toks@\expandafter{\the\toks@ #1}% - \@tempdimc \tabu@thick % The last line width - \ifcase\count@ \@tempdimb \tabu@thick % The first line width - \else \advance\dimen@ \dimexpr \tabu@thick+\doublerulesep \relax - \fi - \advance\count@ \@ne \futurelet \tabu@temp \tabu@nexthlineAZ -}% \tabu@xhlineAZ -\def\tabu@firsthlinecorrection{% \count@ = number of \hline -1 - \@tempdima \dimexpr \ht\@arstrutbox+\dimen@ - \edef\firsthline{% - \omit \hbox to\z@{\hss{\noexpand\tabu@DBG{yellow}\vrule - height \the\dimexpr\@tempdima+\extratabsurround - depth \dp\@arstrutbox - width \tabustrutrule}\hss}\cr - \noalign{\vskip -\the\dimexpr \@tempdima+\@tempdimb - +\dp\@arstrutbox \relax}% - \the\toks@ - }\ifnum0=`{\fi - \expandafter}\firsthline % we are then ! -}% \tabu@firsthlinecorrection -\def\tabu@lasthlinecorrection{% - \@tempdima \dimexpr \dp\@arstrutbox+\dimen@+\@tempdimb+\@tempdimc - \edef\lasthline{% - \the\toks@ - \noalign{\vskip -\the\dimexpr\dimen@+\@tempdimb+\dp\@arstrutbox}% - \omit \hbox to\z@{\hss{\noexpand\tabu@DBG{yellow}\vrule - depth \the\dimexpr \dp\@arstrutbox+\@tempdimb+\dimen@ - +\extratabsurround-\@tempdimc - height \z@ - width \tabustrutrule}\hss}\cr - }\ifnum0=`{\fi - \expandafter}\lasthline % we are then ! -}% \tabu@lasthlinecorrection -\def\tabu@LT@@hline{% - \ifx\LT@next\hline - \global\let\LT@next \@gobble - \ifx \CT@drsc@\relax - \gdef\CT@LT@sep{% - \noalign{\penalty-\@medpenalty\vskip\doublerulesep}}% - \else - \gdef\CT@LT@sep{% - \multispan\LT@cols{% - \CT@drsc@\leaders\hrule\@height\doublerulesep\hfill}\cr}% - \fi - \else - \global\let\LT@next\empty - \gdef\CT@LT@sep{% - \noalign{\penalty-\@lowpenalty\vskip-\arrayrulewidth}}% - \fi - \ifnum0=`{\fi}% - \multispan\LT@cols - {\CT@arc@\leaders\hrule\@height\arrayrulewidth\hfill}\cr - \CT@LT@sep - \multispan\LT@cols - {\CT@arc@\leaders\hrule\@height\arrayrulewidth\hfill}\cr - \noalign{\penalty\@M}% - \LT@next -}% \tabu@LT@@hline -%% Horizontal lines : \tabucline ------------------------------------ -\let\tabu@start \@tempcnta -\let\tabu@stop \@tempcntb -\newcommand*\tabucline{\noalign{\ifnum0=`}\fi \tabu@cline} -\newcommand*\tabu@cline[2][]{\tabu@startstop{#2}% - \ifnum \tabu@stop<\z@ \toks@{}% - \else \tabu@clinearg{#1}\tabu@thestyle - \edef\tabucline{\toks@{% - \ifnum \tabu@start>\z@ \omit - \tabu@multispan\tabu@start {\span\omit}&\fi - \omit \tabu@multispan\tabu@stop {\span\omit}% - \tabu@thehline\cr - }}\tabucline - \tabu@tracinglines{(tabu:tabucline) Style: #1^^J\the\toks@^^J^^J}% - \fi - \futurelet \tabu@temp \tabu@xcline -}% \tabu@cline -\def\tabu@clinearg #1{% - \ifx\\#1\\\let\tabu@thestyle \tabu@ls@ - \else \@defaultunits \expandafter\let\expandafter\@tempa - \romannumeral-`\0#1\relax \@nnil - \ifx \hbox\@tempa \tabu@clinebox{#1}% - \else\ifx \box\@tempa \tabu@clinebox{#1}% - \else\ifx \vbox\@tempa \tabu@clinebox{#1}% - \else\ifx \vtop\@tempa \tabu@clinebox{#1}% - \else\ifx \copy\@tempa \tabu@clinebox{#1}% - \else\ifx \leaders\@tempa \tabu@clineleads{#1}% - \else\ifx \cleaders\@tempa \tabu@clineleads{#1}% - \else\ifx \xleaders\@tempa \tabu@clineleads{#1}% - \else\tabu@getline {#1}% - \fi\fi\fi\fi\fi\fi\fi\fi - \fi -}% \tabu@clinearg -\def\tabu@clinebox #1{\tabu@clineleads{\xleaders#1\hss}} -\def\tabu@clineleads #1{% - \let\tabu@thestyle \relax \let\tabu@leaders \@undefined - \gdef\tabu@thehrule{#1}} -\def\tabu@thehline{\begingroup - \ifdefined\tabu@leaders - \noexpand\tabu@thehleaders - \else \noexpand\tabu@thehrule - \fi \endgroup -}% \tabu@thehline -\def\tabu@xcline{% - \ifx \tabu@temp\tabucline - \toks@\expandafter{\the\toks@ \noalign - {\ifx\CT@drsc@\relax \vskip - \else \CT@drsc@\hrule height - \fi - \doublerulesep}}% - \fi - \tabu@docline -}% \tabu@xcline -\def\tabu@docline {\ifnum0=`{\fi \expandafter}\the\toks@} -\def\tabu@docline@evr {\xdef\tabu@doclineafter{\the\toks@}% - \ifnum0=`{\fi}\aftergroup\tabu@doclineafter} -\def\tabu@multispan #1#2{% - \ifnum\numexpr#1>\@ne #2\expandafter\tabu@multispan - \else \expandafter\@gobbletwo - \fi {#1-1}{#2}% -}% \tabu@multispan -\def\tabu@startstop #1{\tabu@start@stop #1\relax 1-\tabu@nbcols \@nnil} -\def\tabu@start@stop #1-#2\@nnil{% - \@defaultunits \tabu@start\number 0#1\relax \@nnil - \@defaultunits \tabu@stop \number 0#2\relax \@nnil - \tabu@stop \ifnum \tabu@start>\tabu@nbcols \m@ne - \else\ifnum \tabu@stop=\z@ \tabu@nbcols - \else\ifnum \tabu@stop>\tabu@nbcols \tabu@nbcols - \else \tabu@stop - \fi\fi\fi - \advance\tabu@start \m@ne - \ifnum \tabu@start>\z@ \advance\tabu@stop -\tabu@start \fi -}% \tabu@start@stop -%% Numbers: siunitx S columns (and \tabudecimal) ------------------- -\def\tabu@tabudecimal #1{% - \def\tabu@decimal{#1}\@temptokena{}% - \let\tabu@getdecimal@ \tabu@getdecimal@ignorespaces - \tabu@scandecimal -}% \tabu@tabudecimal -\def\tabu@scandecimal{\futurelet \tabu@temp \tabu@getdecimal@} -\def\tabu@skipdecimal#1{#1\tabu@scandecimal} -\def\tabu@getdecimal@ignorespaces{% - \ifcase 0\ifx\tabu@temp\ignorespaces\else - \ifx\tabu@temp\@sptoken1\else - 2\fi\fi\relax - \let\tabu@getdecimal@ \tabu@getdecimal - \expandafter\tabu@skipdecimal - \or \expandafter\tabu@gobblespace\expandafter\tabu@scandecimal - \else \expandafter\tabu@skipdecimal - \fi -}% \tabu@getdecimal@ignorespaces -\def\tabu@get@decimal#1{\@temptokena\expandafter{\the\@temptokena #1}% - \tabu@scandecimal} -\def\do#1{% - \def\tabu@get@decimalspace#1{% - \@temptokena\expandafter{\the\@temptokena #1}\tabu@scandecimal}% -}\do{ } -\let\tabu@@tabudecimal \tabu@tabudecimal -\def\tabu@getdecimal{% - \ifcase 0\ifx 0\tabu@temp\else - \ifx 1\tabu@temp\else - \ifx 2\tabu@temp\else - \ifx 3\tabu@temp\else - \ifx 4\tabu@temp\else - \ifx 5\tabu@temp\else - \ifx 6\tabu@temp\else - \ifx 7\tabu@temp\else - \ifx 8\tabu@temp\else - \ifx 9\tabu@temp\else - \ifx .\tabu@temp\else - \ifx ,\tabu@temp\else - \ifx -\tabu@temp\else - \ifx +\tabu@temp\else - \ifx e\tabu@temp\else - \ifx E\tabu@temp\else - \ifx\tabu@cellleft\tabu@temp1\else - \ifx\ignorespaces\tabu@temp1\else - \ifx\@sptoken\tabu@temp2\else - 3\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\relax - \expandafter\tabu@get@decimal - \or \expandafter\tabu@skipdecimal - \or \expandafter\tabu@get@decimalspace - \else\expandafter\tabu@printdecimal - \fi -}% \tabu@getdecimal -\def\tabu@printdecimal{% - \edef\tabu@temp{\the\@temptokena}% - \ifx\tabu@temp\@empty\else - \ifx\tabu@temp\space\else - \expandafter\tabu@decimal\expandafter{\the\@temptokena}% - \fi\fi -}% \tabu@printdecimal -%% Verbatim inside X columns ---------------------------------------- -\def\tabu@verbatim{% - \let\verb \tabu@verb - \let\FV@DefineCheckEnd \tabu@FV@DefineCheckEnd -}% \tabu@verbatim -\let\tabu@ltx@verb \verb -\def\tabu@verb{\@ifstar {\tabu@ltx@verb*} \tabu@ltx@verb} -\def\tabu@fancyvrb {% - \def\tabu@FV@DefineCheckEnd ##1{% - \def\tabu@FV@DefineCheckEnd{% - ##1% - \let\FV@CheckEnd \tabu@FV@CheckEnd - \let\FV@@CheckEnd \tabu@FV@@CheckEnd - \let\FV@@@CheckEnd \tabu@FV@@@CheckEnd - \edef\FV@EndScanning{% - \def\noexpand\next{\noexpand\end{\FV@EnvironName}}% - \global\let\noexpand\FV@EnvironName\relax - \noexpand\next}% - \xdef\FV@EnvironName{\detokenize\expandafter{\FV@EnvironName}}}% - }\expandafter\tabu@FV@DefineCheckEnd\expandafter{\FV@DefineCheckEnd} -}% \tabu@fancyvrb -\def\tabu@FV@CheckEnd #1{\expandafter\FV@@CheckEnd \detokenize{#1\end{}}\@nil} -\edef\tabu@FV@@@CheckEnd {\detokenize{\end{}}} -\begingroup -\catcode`\[1 \catcode`\]2 -\@makeother\{ \@makeother\} - \edef\x[\endgroup - \def\noexpand\tabu@FV@@CheckEnd ##1\detokenize[\end{]##2\detokenize[}]##3% - ]\x \@nil{\def\@tempa{#2}\def\@tempb{#3}} -\def\tabu@FV@ListProcessLine #1{% - \hbox {%to \hsize{% - \kern\leftmargin - \hbox {%to \linewidth{% - \FV@LeftListNumber - \FV@LeftListFrame - \FancyVerbFormatLine{#1}\hss -%% DG/SR modification begin - Jan. 28, 1998 (for numbers=right add-on) -%% \FV@RightListFrame}% - \FV@RightListFrame - \FV@RightListNumber}% -%% DG/SR modification end - \hss}} -%% \savetabu -------------------------------------------------------- -\newcommand*\savetabu[1]{\noalign{% - \tabu@sanitizearg{#1}\tabu@temp - \ifx \tabu@temp\@empty \tabu@savewarn{}{The tabu will not be saved}\else - \@ifundefined{tabu@saved@\tabu@temp}{}{\tabu@savewarn{#1}{Overwriting}}% - \ifdefined\tabu@restored \expandafter\let - \csname tabu@saved@\tabu@temp \endcsname \tabu@restored - \else {\tabu@save}% - \fi - \fi}% -}% \savetabu -\def\tabu@save {% - \toks0\expandafter{\tabu@saved@}% - \iftabu@negcoef - \let\tabu@wddef \relax \let\tabu@ \tabu@savewd \edef\tabu@savewd{\tabu@Xcoefs}% - \toks0\expandafter{\the\toks\expandafter0\tabu@savewd}\fi - \toks1\expandafter{\tabu@savedpream}% - \toks2\expandafter{\tabu@savedpreamble}% - \let\@preamble \relax - \let\tabu@savedpream \relax \let\tabu@savedparams \relax - \edef\tabu@preamble{% - \def\noexpand\tabu@aligndefault{\tabu@align}% - \def\tabu@savedparams {\noexpand\the\toks0}% - \def\tabu@savedpream {\noexpand\the\toks1}}% - \edef\tabu@usetabu{% - \def\@preamble {\noexpand\the\toks2}% - \tabu@target \the\tabu@target \relax - \tabucolX \the\tabucolX \relax - \tabu@nbcols \the\tabu@nbcols \relax - \def\noexpand\tabu@aligndefault{\tabu@align}% - \def\tabu@savedparams {\noexpand\the\toks0}% - \def\tabu@savedpream {\noexpand\the\toks1}}% - \let\tabu@aligndefault \relax \let\@sharp \relax - \edef\@tempa{\noexpand\tabu@s@ved - {\tabu@usetabu} - {\tabu@preamble} - {\the\toks1}}\@tempa - \tabu@message@save -}% \tabu@save -\long\def\tabu@s@ved #1#2#3{% - \def\tabu@usetabu{#1}% - \expandafter\gdef\csname tabu@saved@\tabu@temp\endcsname ##1{% - \ifodd ##1% \usetabu - \tabu@measuringfalse \tabu@spreadfalse % Just in case... - \gdef\tabu@usetabu {% - \ifdim \tabu@target>\z@ \tabu@warn@usetabu \fi - \global\let\tabu@usetabu \@undefined - \def\@halignto {to\tabu@target}% - #1% - \ifx \tabu@align\tabu@aligndefault@text - \ifnum \tabu@nested=\z@ - \let\tabu@align \tabu@aligndefault \fi\fi}% - \else % \preamble - \gdef\tabu@preamble {% - \global\let\tabu@preamble \@undefined - #2% - \ifx \tabu@align\tabu@aligndefault@text - \ifnum \tabu@nested=\z@ - \let\tabu@align \tabu@aligndefault \fi\fi}% - \fi - #3}% -}% \tabu@s@ved -\def\tabu@aligndefault@text {\tabu@aligndefault}% -\def\tabu@warn@usetabu {\PackageWarning{tabu} - {Specifying a target with \string\usetabu\space is useless - \MessageBreak The target cannot be changed!}} -\def\tabu@savewd #1#2{\ifdim #2\p@<\z@ \tabu@wddef{#1}{\tabu@wd{#1}}\fi} -\def\tabu@savewarn#1#2{\PackageInfo{tabu} - {User-name `#1' already used for \string\savetabu - \MessageBreak #2}}% -\def\tabu@saveerr#1{\PackageError{tabu} - {User-name `#1' is unknown for \string\usetabu - \MessageBreak I cannot restore an unknown preamble!}\@ehd} -%% \rowfont --------------------------------------------------------- -\newskip \tabu@cellskip -\def\tabu@rowfont{\ifdim \baselineskip=\z@\noalign\fi - {\ifnum0=`}\fi \tabu@row@font} -\newcommand*\tabu@row@font[2][]{% - \ifnum7=\currentgrouptype - \global\let\tabu@@cellleft \tabu@cellleft - \global\let\tabu@@cellright \tabu@cellright - \global\let\tabu@@celllalign \tabu@celllalign - \global\let\tabu@@cellralign \tabu@cellralign - \global\let\tabu@@rowfontreset\tabu@rowfontreset - \fi - \global\let\tabu@rowfontreset \tabu@rowfont@reset - \expandafter\gdef\expandafter\tabu@cellleft\expandafter{\tabu@cellleft #2}% - \ifcsname tabu@cell@#1\endcsname % row alignment - \csname tabu@cell@#1\endcsname \fi - \ifnum0=`{\fi}% end of group / noalign group -}% \rowfont -\def\tabu@ifcolorleavevmode #1{\let\color \tabu@leavevmodecolor #1\let\color\tabu@color}% -\def\tabu@rowfont@reset{% - \global\let\tabu@rowfontreset \tabu@@rowfontreset - \global\let\tabu@cellleft \tabu@@cellleft - \global\let\tabu@cellright \tabu@@cellright - \global\let\tabu@cellfont \@empty - \global\let\tabu@celllalign \tabu@@celllalign - \global\let\tabu@cellralign \tabu@@cellralign -}% \tabu@@rowfontreset -\let\tabu@rowfontreset \@empty % overwritten \AtBeginDocument if colortbl -%% \tabu@prepnext@tok ----------------------------------------------- -\newif \iftabu@cellright -\def\tabu@prepnext@tok{% - \ifnum \count@<\z@ % - \@tempcnta \@M % - \tabu@nbcols\z@ - \let\tabu@fornoopORI \@fornoop - \tabu@cellrightfalse - \else - \ifcase \numexpr \count@-\@tempcnta \relax % (case 0): prev. token is left - \advance \tabu@nbcols \@ne - \iftabu@cellright % before-previous token is right and is finished - \tabu@cellrightfalse % - \tabu@righttok - \fi - \tabu@lefttok - \or % (case 1) previous token is right - \tabu@cellrighttrue \let\@fornoop \tabu@lastnoop - \else % special column: do not change the token - \iftabu@cellright % before-previous token is right - \tabu@cellrightfalse - \tabu@righttok - \fi - \fi % \ifcase - \fi - \tabu@prepnext@tokORI -}% \tabu@prepnext@tok -\long\def\tabu@lastnoop#1\@@#2#3{\tabu@lastn@@p #2\@nextchar \in@\in@@} -\def\tabu@lastn@@p #1\@nextchar #2#3\in@@{% - \ifx \in@#2\else - \let\@fornoop \tabu@fornoopORI - \xdef\tabu@mkpreambuffer{\tabu@nbcols\the\tabu@nbcols \tabu@mkpreambuffer}% - \toks0\expandafter{\expandafter\tabu@everyrowtrue \the\toks0}% - \expandafter\prepnext@tok - \fi -}% \tabu@lastnoop -\def\tabu@righttok{% - \advance \count@ \m@ne - \toks\count@\expandafter {\the\toks\count@ \tabu@cellright \tabu@cellralign}% - \advance \count@ \@ne -}% \tabu@righttok -\def\tabu@lefttok{\toks\count@\expandafter{\expandafter\tabu@celllalign - \the\toks\count@ \tabu@cellleft}% after because of $ -}% \tabu@lefttok -%% Neutralisation of glues ------------------------------------------ -\let\tabu@cellleft \@empty -\let\tabu@cellright \@empty -\tabu@celllalign@def{\tabu@cellleft}% -\let\tabu@cellralign \@empty -\def\tabu@cell@align #1#2#3{% - \let\tabu@maybesiunitx \toks@ \tabu@celllalign - \global \expandafter \tabu@celllalign@def \expandafter {\the\toks@ #1}% - \toks@\expandafter{\tabu@cellralign #2}% - \xdef\tabu@cellralign{\the\toks@}% - \toks@\expandafter{\tabu@cellleft #3}% - \xdef\tabu@cellleft{\the\toks@}% -}% \tabu@cell@align -\def\tabu@cell@l{% force alignment to left - \tabu@cell@align - {\tabu@removehfil \raggedright \tabu@cellleft}% left - {\tabu@flush1\tabu@ignorehfil}% right - \raggedright -}% \tabu@cell@l -\def\tabu@cell@c{% force alignment to center - \tabu@cell@align - {\tabu@removehfil \centering \tabu@flush{.5}\tabu@cellleft} - {\tabu@flush{.5}\tabu@ignorehfil} - \centering -}% \tabu@cell@c -\def\tabu@cell@r{% force alignment to right - \tabu@cell@align - {\tabu@removehfil \raggedleft \tabu@flush1\tabu@cellleft} - \tabu@ignorehfil - \raggedleft -}% \tabu@cell@r -\def\tabu@cell@j{% force justification (for p, m, b columns) - \tabu@cell@align - {\tabu@justify\tabu@cellleft} - {} - \tabu@justify -}% \tabu@cell@j -\def\tabu@justify{% - \leftskip\z@skip \@rightskip\leftskip \rightskip\@rightskip - \parfillskip\@flushglue -}% \tabu@justify -%% ragged2e settings -\def\tabu@cell@L{% force alignment to left (ragged2e) - \tabu@cell@align - {\tabu@removehfil \RaggedRight \tabu@cellleft} - {\tabu@flush 1\tabu@ignorehfil} - \RaggedRight -}% \tabu@cell@L -\def\tabu@cell@C{% force alignment to center (ragged2e) - \tabu@cell@align - {\tabu@removehfil \Centering \tabu@flush{.5}\tabu@cellleft} - {\tabu@flush{.5}\tabu@ignorehfil} - \Centering -}% \tabu@cell@C -\def\tabu@cell@R{% force alignment to right (ragged2e) - \tabu@cell@align - {\tabu@removehfil \RaggedLeft \tabu@flush 1\tabu@cellleft} - \tabu@ignorehfil - \RaggedLeft -}% \tabu@cell@R -\def\tabu@cell@J{% force justification (ragged2e) - \tabu@cell@align - {\justifying \tabu@cellleft} - {} - \justifying -}% \tabu@cell@J -\def\tabu@flush#1{% - \iftabu@colortbl % colortbl uses \hfill rather than \hfil - \hskip \ifnum13<\currentgrouptype \stretch{#1}% - \else \ifdim#1pt<\p@ \tabu@cellskip - \else \stretch{#1} - \fi\fi \relax - \else % array.sty - \ifnum 13<\currentgrouptype - \hfil \hskip1sp \relax \fi - \fi -}% \tabu@flush -\let\tabu@hfil \hfil -\let\tabu@hfill \hfill -\let\tabu@hskip \hskip -\def\tabu@removehfil{% - \iftabu@colortbl - \unkern \tabu@cellskip =\lastskip - \ifnum\gluestretchorder\tabu@cellskip =\tw@ \hskip-\tabu@cellskip - \else \tabu@cellskip \z@skip - \fi - \else - \ifdim\lastskip=1sp\unskip\fi - \ifnum\gluestretchorder\lastskip =\@ne - \hfilneg % \hfilneg for array.sty but not for colortbl... - \fi - \fi -}% \tabu@removehfil -\def\tabu@ignorehfil{\aftergroup \tabu@nohfil} -\def\tabu@nohfil{% \hfil -> do nothing + restore original \hfil - \def\hfil{\let\hfil \tabu@hfil}% local to (alignment template) group -}% \tabu@nohfil -\def\tabu@colortblalignments {% if colortbl - \def\tabu@nohfil{% - \def\hfil {\let\hfil \tabu@hfil}% local to (alignment template) group - \def\hfill {\let\hfill \tabu@hfill}% (colortbl uses \hfill) pfff... - \def\hskip ####1\relax{\let\hskip \tabu@hskip}}% local -}% \tabu@colortblalignments -%% Taking care of footnotes and hyperfootnotes ---------------------- -\long\def\tabu@footnotetext #1{% - \edef\@tempa{\the\tabu@footnotes - \noexpand\footnotetext [\the\csname c@\@mpfn\endcsname]}% - \global\tabu@footnotes\expandafter{\@tempa {#1}}}% -\long\def\tabu@xfootnotetext [#1]#2{% - \global\tabu@footnotes\expandafter{\the\tabu@footnotes - \footnotetext [{#1}]{#2}}} -\let\tabu@xfootnote \@xfootnote -\long\def\tabu@Hy@ftntext{\tabu@Hy@ftntxt {\the \c@footnote }} -\long\def\tabu@Hy@xfootnote [#1]{% - \begingroup - \value\@mpfn #1\relax - \protected@xdef \@thefnmark {\thempfn}% - \endgroup - \@footnotemark \tabu@Hy@ftntxt {#1}% -}% \tabu@Hy@xfootnote -\long\def\tabu@Hy@ftntxt #1#2{% - \edef\@tempa{% - \the\tabu@footnotes - \begingroup - \value\@mpfn #1\relax - \noexpand\protected@xdef\noexpand\@thefnmark {\noexpand\thempfn}% - \expandafter \noexpand \expandafter - \tabu@Hy@footnotetext \expandafter{\Hy@footnote@currentHref}% - }% - \global\tabu@footnotes\expandafter{\@tempa {#2}% - \endgroup}% -}% \tabu@Hy@ftntxt -\long\def\tabu@Hy@footnotetext #1#2{% - \H@@footnotetext{% - \ifHy@nesting - \hyper@@anchor {#1}{#2}% - \else - \Hy@raisedlink{% - \hyper@@anchor {#1}{\relax}% - }% - \def\@currentHref {#1}% - \let\@currentlabelname \@empty - #2% - \fi - }% -}% \tabu@Hy@footnotetext -%% No need for \arraybackslash ! ------------------------------------ -\def\tabu@latextwoe {% -\def\tabu@temp##1##2##3{{\toks@\expandafter{##2##3}\xdef##1{\the\toks@}}} -\tabu@temp \tabu@centering \centering \arraybackslash -\tabu@temp \tabu@raggedleft \raggedleft \arraybackslash -\tabu@temp \tabu@raggedright \raggedright \arraybackslash -}% \tabu@latextwoe -\def\tabu@raggedtwoe {% -\def\tabu@temp ##1##2##3{{\toks@\expandafter{##2##3}\xdef##1{\the\toks@}}} -\tabu@temp \tabu@Centering \Centering \arraybackslash -\tabu@temp \tabu@RaggedLeft \RaggedLeft \arraybackslash -\tabu@temp \tabu@RaggedRight \RaggedRight \arraybackslash -\tabu@temp \tabu@justifying \justifying \arraybackslash -}% \tabu@raggedtwoe -\def\tabu@normalcrbackslash{\let\\\@normalcr} -\def\tabu@trivlist{\expandafter\def\expandafter\@trivlist\expandafter{% - \expandafter\tabu@normalcrbackslash \@trivlist}} -%% Utilities: \fbox \fcolorbox and \tabudecimal ------------------- -\def\tabu@fbox {\leavevmode\afterassignment\tabu@beginfbox \setbox\@tempboxa\hbox} -\def\tabu@beginfbox {\bgroup \kern\fboxsep - \bgroup\aftergroup\tabu@endfbox} -\def\tabu@endfbox {\kern\fboxsep\egroup\egroup - \@frameb@x\relax} -\def\tabu@color@b@x #1#2{\leavevmode \bgroup - \def\tabu@docolor@b@x{#1{#2\color@block{\wd\z@}{\ht\z@}{\dp\z@}\box\z@}}% - \afterassignment\tabu@begincolor@b@x \setbox\z@ \hbox -}% \tabu@color@b@x -\def\tabu@begincolor@b@x {\kern\fboxsep \bgroup - \aftergroup\tabu@endcolor@b@x \set@color} -\def\tabu@endcolor@b@x {\kern\fboxsep \egroup - \dimen@\ht\z@ \advance\dimen@ \fboxsep \ht\z@ \dimen@ - \dimen@\dp\z@ \advance\dimen@ \fboxsep \dp\z@ \dimen@ - \tabu@docolor@b@x \egroup -}% \tabu@endcolor@b@x -%% Corrections (arydshln, delarray, colortbl) ----------------------- -\def\tabu@fix@arrayright {%% \@arrayright is missing from \endarray - \iftabu@colortbl - \ifdefined\adl@array % - \def\tabu@endarray{% - \adl@endarray \egroup \adl@arrayrestore \CT@end \egroup % - \@arrayright % - \gdef\@preamble{}}% - \else % - \def\tabu@endarray{% - \crcr \egroup \egroup % - \@arrayright % - \gdef\@preamble{}\CT@end}% - \fi - \else - \ifdefined\adl@array % - \def\tabu@endarray{% - \adl@endarray \egroup \adl@arrayrestore \egroup % - \@arrayright % - \gdef\@preamble{}}% - \else % - \PackageWarning{tabu} - {\string\@arrayright\space is missing from the - \MessageBreak definition of \string\endarray. - \MessageBreak Compatibility with delarray.sty is broken.}% - \fi\fi -}% \tabu@fix@arrayright -\def\tabu@adl@xarraydashrule #1#2#3{% - \ifnum\@lastchclass=\adl@class@start\else - \ifnum\@lastchclass=\@ne\else - \ifnum\@lastchclass=5 \else % @-arg (class 5) and !-arg (class 1) - \adl@leftrulefalse \fi\fi % must be treated the same - \fi - \ifadl@zwvrule\else \ifadl@inactive\else - \@addtopreamble{\vrule\@width\arrayrulewidth - \@height\z@ \@depth\z@}\fi \fi - \ifadl@leftrule - \@addtopreamble{\adl@vlineL{\CT@arc@}{\adl@dashgapcolor}% - {\number#1}#3}% - \else \@addtopreamble{\adl@vlineR{\CT@arc@}{\adl@dashgapcolor}% - {\number#2}#3} - \fi -}% \tabu@adl@xarraydashrule -\def\tabu@adl@act@endpbox {% - \unskip \ifhmode \nobreak \fi \@finalstrut \@arstrutbox - \egroup \egroup - \adl@colhtdp \box\adl@box \hfil -}% \tabu@adl@act@endpbox -\def\tabu@adl@fix {% - \let\adl@xarraydashrule \tabu@adl@xarraydashrule % arydshln - \let\adl@act@endpbox \tabu@adl@act@endpbox % arydshln - \let\adl@act@@endpbox \tabu@adl@act@endpbox % arydshln - \let\@preamerror \@preamerr % arydshln -}% \tabu@adl@fix -%% Correction for longtable' \@startbox definition ------------------ -%% => \everypar is ``missing'' : TeX should be in vertical mode -\def\tabu@LT@startpbox #1{% - \bgroup - \let\@footnotetext\LT@p@ftntext - \setlength\hsize{#1}% - \@arrayparboxrestore - \everypar{% - \vrule \@height \ht\@arstrutbox \@width \z@ - \everypar{}}% -}% \tabu@LT@startpbox -%% \tracingtabu and the package options ------------------ -\DeclareOption{delarray}{\AtEndOfPackage{\RequirePackage{delarray}}} -\DeclareOption{linegoal}{% - \AtEndOfPackage{% - \RequirePackage{linegoal}[2010/12/07]% - \let\tabudefaulttarget \linegoal% \linegoal is \linewidth if not pdfTeX -}} -\DeclareOption{scantokens}{\tabuscantokenstrue} -\DeclareOption{debugshow}{\AtEndOfPackage{\tracingtabu=\tw@}} -\def\tracingtabu {\begingroup\@ifnextchar=% - {\afterassignment\tabu@tracing\count@} - {\afterassignment\tabu@tracing\count@1\relax}} -\def\tabu@tracing{\expandafter\endgroup - \expandafter\tabu@tr@cing \the\count@ \relax -}% \tabu@tracing -\def\tabu@tr@cing #1\relax {% - \ifnum#1>\thr@@ \let\tabu@tracinglines\message - \else \let\tabu@tracinglines\@gobble - \fi - \ifnum#1>\tw@ \let\tabu@DBG \tabu@@DBG - \def\tabu@mkarstrut {\tabu@DBG@arstrut}% - \tabustrutrule 1.5\p@ - \else \let\tabu@DBG \@gobble - \def\tabu@mkarstrut {\tabu@arstrut}% - \tabustrutrule \z@ - \fi - \ifnum#1>\@ne \let\tabu@debug \message - \else \let\tabu@debug \@gobble - \fi - \ifnum#1>\z@ - \let\tabu@message \message - \let\tabu@tracing@save \tabu@message@save - \let\tabu@starttimer \tabu@pdftimer - \else - \let\tabu@message \@gobble - \let\tabu@tracing@save \@gobble - \let\tabu@starttimer \relax - \fi -}% \tabu@tr@cing -%% Setup \AtBeginDocument -\AtBeginDocument{\tabu@AtBeginDocument} -\def\tabu@AtBeginDocument{\let\tabu@AtBeginDocument \@undefined - \ifdefined\arrayrulecolor \tabu@colortbltrue % - \tabu@colortblalignments % different glues are used - \else \tabu@colortblfalse \fi - \ifdefined\CT@arc@ \else \let\CT@arc@ \relax \fi - \ifdefined\CT@drsc@\else \let\CT@drsc@ \relax \fi - \let\tabu@arc@L \CT@arc@ \let\tabu@drsc@L \CT@drsc@ - \ifodd 1\ifcsname siunitx_table_collect_begin:Nn\endcsname % - \expandafter\ifx - \csname siunitx_table_collect_begin:Nn\endcsname\relax 0\fi\fi\relax - \tabu@siunitxtrue - \else \let\tabu@maybesiunitx \@firstofone % - \let\tabu@siunitx \tabu@nosiunitx - \tabu@siunitxfalse - \fi - \ifdefined\adl@array % - \else \let\tabu@adl@fix \relax - \let\tabu@adl@endtrial \@empty \fi - \ifdefined\longtable % - \else \let\longtabu \tabu@nolongtabu \fi - \ifdefined\cellspacetoplimit \tabu@warn@cellspace\fi - \csname\ifcsname ifHy@hyperfootnotes\endcsname % - ifHy@hyperfootnotes\else iffalse\fi\endcsname - \let\tabu@footnotetext \tabu@Hy@ftntext - \let\tabu@xfootnote \tabu@Hy@xfootnote \fi - \ifdefined\FV@DefineCheckEnd% - \tabu@fancyvrb \fi - \ifdefined\color % - \let\tabu@color \color - \def\tabu@leavevmodecolor ##1{% - \def\tabu@leavevmodecolor {\leavevmode ##1}% - }\expandafter\tabu@leavevmodecolor\expandafter{\color}% - \else - \let\tabu@color \tabu@nocolor - \let\tabu@leavevmodecolor \@firstofone \fi - \tabu@latextwoe - \ifdefined\@raggedtwoe@everyselectfont % - \tabu@raggedtwoe - \else - \let\tabu@cell@L \tabu@cell@l - \let\tabu@cell@R \tabu@cell@r - \let\tabu@cell@C \tabu@cell@c - \let\tabu@cell@J \tabu@cell@j \fi - \expandafter\in@ \expandafter\@arrayright \expandafter{\endarray}% - \ifin@ \let\tabu@endarray \endarray - \else \tabu@fix@arrayright \fi% - \everyrow{}% -}% \tabu@AtBeginDocument -\def\tabu@warn@cellspace{% - \PackageWarning{tabu}{% - Package cellspace has some limitations - \MessageBreak And redefines some macros of array.sty. - \MessageBreak Please use \string\tabulinesep\space to control - \MessageBreak vertical spacing of lines inside tabu environment}% -}% \tabu@warn@cellspace -%% tabu Package initialisation -\tabuscantokensfalse -\let\tabu@arc@G \relax -\let\tabu@drsc@G \relax -\let\tabu@evr@G \@empty -\let\tabu@rc@G \@empty -\def\tabu@ls@G {\tabu@linestyle@}% -\let\tabu@@rowfontreset \@empty % -\let\tabu@@celllalign \@empty -\let\tabu@@cellralign \@empty -\let\tabu@@cellleft \@empty -\let\tabu@@cellright \@empty -\def\tabu@naturalXmin {\z@} -\def\tabu@naturalXmax {\z@} -\let\tabu@rowfontreset \@empty -\def\tabulineon {4pt}\let\tabulineoff \tabulineon -\tabu@everyrowtrue -\ifdefined\pdfelapsedtime % - \def\tabu@pdftimer {\xdef\tabu@starttime{\the\pdfelapsedtime}}% -\else \let\tabu@pdftimer \relax \let\tabu@message@etime \relax -\fi -\tracingtabu=\z@ -\newtabulinestyle {=\maxdimen}% creates the 'factory' settings \tabu@linestyle@ -\tabulinestyle{} -\taburowcolors{} -\let\tabudefaulttarget \linewidth -\ProcessOptions* % \ProcessOptions* is quicker ! -\endinput -%% -%% End of file `tabu.sty'. diff --git a/latex/utils_8h_source.tex b/latex/utils_8h_source.tex deleted file mode 100644 index 6e197687..00000000 --- a/latex/utils_8h_source.tex +++ /dev/null @@ -1,79 +0,0 @@ -\doxysection{utils.\+h} -\hypertarget{utils_8h_source}{}\label{utils_8h_source}\index{src/cpp/utils.h@{src/cpp/utils.h}} - -\begin{DoxyCode}{0} -\DoxyCodeLine{00001\ \textcolor{preprocessor}{\#ifndef\ UTILS\_H}} -\DoxyCodeLine{00002\ \textcolor{preprocessor}{\#define\ UTILS\_H}} -\DoxyCodeLine{00003\ } -\DoxyCodeLine{00004\ \textcolor{preprocessor}{\#include\ }} -\DoxyCodeLine{00005\ \textcolor{preprocessor}{\#include\ }} -\DoxyCodeLine{00006\ \textcolor{preprocessor}{\#include\ }} -\DoxyCodeLine{00007\ \textcolor{preprocessor}{\#include\ }} -\DoxyCodeLine{00008\ \textcolor{preprocessor}{\#include\ }} -\DoxyCodeLine{00009\ \textcolor{preprocessor}{\#include\ }} -\DoxyCodeLine{00010\ \textcolor{preprocessor}{\#include\ }} -\DoxyCodeLine{00011\ \textcolor{preprocessor}{\#include\ }} -\DoxyCodeLine{00012\ \textcolor{preprocessor}{\#include\ }} -\DoxyCodeLine{00013\ \textcolor{preprocessor}{\#include\ }} -\DoxyCodeLine{00014\ \textcolor{preprocessor}{\#include\ }} -\DoxyCodeLine{00015\ \textcolor{preprocessor}{\#include\ }} -\DoxyCodeLine{00016\ \textcolor{preprocessor}{\#include\ }} -\DoxyCodeLine{00017\ \textcolor{preprocessor}{\#include\ }} -\DoxyCodeLine{00018\ \textcolor{preprocessor}{\#include\ }} -\DoxyCodeLine{00019\ \textcolor{preprocessor}{\#include\ }} -\DoxyCodeLine{00020\ \textcolor{preprocessor}{\#include\ }} -\DoxyCodeLine{00021\ \textcolor{preprocessor}{\#include\ }} -\DoxyCodeLine{00022\ \textcolor{preprocessor}{\#include\ }} -\DoxyCodeLine{00023\ } -\DoxyCodeLine{00024\ \textcolor{preprocessor}{\#include\ "{}json.hpp"{}}} -\DoxyCodeLine{00025\ } -\DoxyCodeLine{00026\ \textcolor{keyword}{using\ }json\ =\ nlohmann::json;} -\DoxyCodeLine{00027\ } -\DoxyCodeLine{00028\ \textcolor{keyword}{typedef}\ \textcolor{keywordtype}{unsigned}\ \textcolor{keywordtype}{long}\ \textcolor{keywordtype}{long}\ \textcolor{keywordtype}{int}\ hash\_t;} -\DoxyCodeLine{00029\ } -\DoxyCodeLine{00037\ std::vector\ read\_min\_hashes(\textcolor{keyword}{const}\ std::string\&\ sketch\_path);} -\DoxyCodeLine{00038\ } -\DoxyCodeLine{00039\ } -\DoxyCodeLine{00040\ } -\DoxyCodeLine{00041\ } -\DoxyCodeLine{00042\ } -\DoxyCodeLine{00043\ } -\DoxyCodeLine{00050\ \textcolor{keywordtype}{void}\ compute\_index\_from\_sketches(std::vector>\&\ sketches,\ std::unordered\_map>\&\ hash\_index);} -\DoxyCodeLine{00051\ } -\DoxyCodeLine{00052\ } -\DoxyCodeLine{00053\ } -\DoxyCodeLine{00054\ } -\DoxyCodeLine{00055\ } -\DoxyCodeLine{00056\ } -\DoxyCodeLine{00063\ \textcolor{keywordtype}{void}\ get\_sketch\_paths(\textcolor{keyword}{const}\ std::string\&\ filelist,\ std::vector\&\ sketch\_paths);} -\DoxyCodeLine{00064\ } -\DoxyCodeLine{00065\ } -\DoxyCodeLine{00066\ } -\DoxyCodeLine{00067\ } -\DoxyCodeLine{00068\ } -\DoxyCodeLine{00069\ } -\DoxyCodeLine{00078\ \textcolor{keywordtype}{void}\ read\_sketches(std::vector\&\ sketch\_paths,} -\DoxyCodeLine{00079\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ std::vector>\&\ sketches,\ } -\DoxyCodeLine{00080\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ std::vector\&\ empty\_sketch\_ids,\ } -\DoxyCodeLine{00081\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \textcolor{keyword}{const}\ uint\ num\_threads);} -\DoxyCodeLine{00082\ } -\DoxyCodeLine{00083\ } -\DoxyCodeLine{00084\ } -\DoxyCodeLine{00085\ } -\DoxyCodeLine{00086\ } -\DoxyCodeLine{00092\ \textcolor{keywordtype}{void}\ show\_empty\_sketches(\textcolor{keyword}{const}\ std::vector\&);} -\DoxyCodeLine{00093\ } -\DoxyCodeLine{00094\ } -\DoxyCodeLine{00095\ } -\DoxyCodeLine{00096\ } -\DoxyCodeLine{00109\ \textcolor{keywordtype}{void}\ compute\_intersection\_matrix(\textcolor{keyword}{const}\ std::vector>\&\ sketches\_query,} -\DoxyCodeLine{00110\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \textcolor{keyword}{const}\ std::vector>\&\ sketches\_ref,\ } -\DoxyCodeLine{00111\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \textcolor{keyword}{const}\ std::unordered\_map>\&\ hash\_index\_ref,} -\DoxyCodeLine{00112\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \textcolor{keyword}{const}\ std::string\&\ out\_dir,\ } -\DoxyCodeLine{00113\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ std::vector>\&\ similars,} -\DoxyCodeLine{00114\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \textcolor{keywordtype}{double}\ containment\_threshold,} -\DoxyCodeLine{00115\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \textcolor{keyword}{const}\ \textcolor{keywordtype}{int}\ num\_passes,\ \textcolor{keyword}{const}\ \textcolor{keywordtype}{int}\ num\_threads);} -\DoxyCodeLine{00116\ } -\DoxyCodeLine{00117\ \textcolor{preprocessor}{\#endif}} - -\end{DoxyCode} From 24562daef53230d1cb4a355988271a615f4e239b Mon Sep 17 00:00:00 2001 From: Chunyu Ma Date: Tue, 10 Dec 2024 11:18:54 -0500 Subject: [PATCH 24/35] rename compute_similarity.cpp -> yacht_run_compute_similarity.cpp --- .../{compute_similarity.cpp => yacht_run_compute_similarity.cpp} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename src/cpp/{compute_similarity.cpp => yacht_run_compute_similarity.cpp} (100%) diff --git a/src/cpp/compute_similarity.cpp b/src/cpp/yacht_run_compute_similarity.cpp similarity index 100% rename from src/cpp/compute_similarity.cpp rename to src/cpp/yacht_run_compute_similarity.cpp From 9e5dddf4493c7e5788ed03d17b64e1ef14027a80 Mon Sep 17 00:00:00 2001 From: Chunyu Ma Date: Tue, 10 Dec 2024 11:20:19 -0500 Subject: [PATCH 25/35] update yacht run --- src/yacht/hypothesis_recovery_src.py | 45 ++++++++++++++++----------- src/yacht/utils.py | 9 +++--- tests/test_hypothesis_recovery_src.py | 12 +++++-- 3 files changed, 39 insertions(+), 27 deletions(-) diff --git a/src/yacht/hypothesis_recovery_src.py b/src/yacht/hypothesis_recovery_src.py index 77a0218d..4736e7fb 100644 --- a/src/yacht/hypothesis_recovery_src.py +++ b/src/yacht/hypothesis_recovery_src.py @@ -10,6 +10,7 @@ from multiprocessing import Pool import sourmash import glob +import shutil from typing import List, Set, Tuple from .utils import load_signature_with_ksize, decompress_all_sig_files # Configure Loguru logger @@ -24,17 +25,17 @@ sys.stdout, format="{time:YYYY-MM-DD HH:mm:ss} - {level} - {message}", level="INFO" ) +# Set up contants SIG_SUFFIX = ".sig" - +FILE_LOCATION = os.path.dirname(os.path.realpath(__file__)) def get_organisms_with_nonzero_overlap( manifest: pd.DataFrame, sample_file: str, - scale: int, - ksize: int, num_threads: int, path_to_genome_temp_dir: str, path_to_sample_temp_dir: str, + num_genome_threshold: int = 1000000 ) -> List[str]: """ This function runs the sourmash multisearch to find the organisms that have non-zero overlap with the sample. @@ -49,8 +50,6 @@ def get_organisms_with_nonzero_overlap( 'sample_scale_factor', 'min_coverage' :param sample_file: string (path to the sample signature file) - :param scale: int (scale factor) - :param ksize: string (size of kmer) :param num_threads: int (number of threads to use for parallelization) :param path_to_genome_temp_dir: string (path to the genome temporary directory generated by the training step) :param path_to_sample_temp_dir: string (path to the sample temporary directory) @@ -75,7 +74,7 @@ def get_organisms_with_nonzero_overlap( ) ] ) - sample_sig_file_path = os.path.join(path_to_sample_temp_dir, "sample_sig_file.txt") + sample_sig_file_path = os.path.join(path_to_sample_temp_dir, "sample_sig_file.tsv") sample_sig_file.to_csv(sample_sig_file_path, header=False, index=False) organism_sig_file = pd.DataFrame( @@ -85,26 +84,36 @@ def get_organisms_with_nonzero_overlap( ] ) organism_sig_file_path = os.path.join( - path_to_sample_temp_dir, "organism_sig_file.txt" + path_to_sample_temp_dir, "organism_sig_file.tsv" ) organism_sig_file.to_csv(organism_sig_file_path, header=False, index=False) - # run the sourmash multisearch - cmd = f"sourmash scripts multisearch {sample_sig_file_path} {organism_sig_file_path} -s {scale} -k {ksize} -c {num_threads} -t 0 -o {os.path.join(path_to_sample_temp_dir, 'sample_multisearch_result.csv')}" - logger.info(f"Running sourmash multisearch with command: {cmd}") + # run algorithm to calculate similarity between sample and organisms + total_sig_files = len(organism_sig_file[0]) + if total_sig_files <= num_genome_threshold: + passes = 1 + else: + passes = int(total_sig_files / num_genome_threshold) + 1 + cmd = f"{FILE_LOCATION}/yacht_run_compute_similarity {sample_sig_file_path} {organism_sig_file_path} {path_to_sample_temp_dir} -t {num_threads} -p {passes} -c 0 -C -o {path_to_sample_temp_dir}/sample_comparison_result.csv" + + logger.info(f"Running similarity algorithm with command: {cmd}") exit_code = os.system(cmd) if exit_code != 0: - raise ValueError(f"Error running sourmash multisearch with command: {cmd}") + raise ValueError(f"Error running similarity algorithm with command: {cmd}") + + # remove all split comparison files ("*.txt") but only keep the combined ones + for file in glob.glob(os.path.join(path_to_sample_temp_dir, "*.txt")): + os.remove(file) - # read the multisearch result - multisearch_result = pd.read_csv( - os.path.join(path_to_sample_temp_dir, "sample_multisearch_result.csv"), + # read the similarity algorithm result + comparison_result = pd.read_csv( + os.path.join(path_to_sample_temp_dir, "sample_comparison_result.csv"), sep=",", - header=0, + header=None, ) - multisearch_result = multisearch_result.drop_duplicates().reset_index(drop=True) + comparison_result = comparison_result.drop_duplicates().reset_index(drop=True) - return multisearch_result["match_name"].to_list() + return [manifest['organism_name'].to_list()[i] for i in comparison_result[1].to_list()] def get_exclusive_hashes( @@ -355,8 +364,6 @@ def hypothesis_recovery( nontrivial_organism_names = get_organisms_with_nonzero_overlap( manifest, sample_file, - scale, - ksize, num_threads, path_to_genome_temp_dir, path_to_sample_temp_dir, diff --git a/src/yacht/utils.py b/src/yacht/utils.py index d4026229..ff47989b 100644 --- a/src/yacht/utils.py +++ b/src/yacht/utils.py @@ -22,7 +22,7 @@ FILE_LOCATION = os.path.dirname(os.path.realpath(__file__)) # Set up global variables -__version__ = "1.3.0" +__version__ = "1.4.0" GITHUB_API_URL = "https://api.github.com/repos/KoslickiLab/YACHT/contents/demo/{path}" GITHUB_RAW_URL = "https://raw.githubusercontent.com/KoslickiLab/YACHT/main/demo/{path}" BASE_URL = "https://farm.cse.ucdavis.edu/~ctbrown/sourmash-db/" @@ -140,16 +140,15 @@ def run_yacht_train_core( passes = 1 else: passes = int(total_sig_files / num_genome_threshold) + 1 - cmd = f"{FILE_LOCATION}/run_yacht_train_core -t {num_threads} -c {containment_thresh} -p {passes} {sig_files_path} {path_to_temp_dir} {os.path.join(path_to_temp_dir, 'selected_result.tsv')}" + cmd = f"{FILE_LOCATION}/yacht_train_core -t {num_threads} -c {containment_thresh} -p {passes} {sig_files_path} {path_to_temp_dir} {os.path.join(path_to_temp_dir, 'selected_result.tsv')}" logger.info(f"Running comparison algorithm with command: {cmd}") exit_code = os.system(cmd) if exit_code != 0: raise ValueError(f"Error running comparison algorithm with command: {cmd}") - # move all split comparison files to a single foldr - os.makedirs(os.path.join(path_to_temp_dir, "comparison_files"), exist_ok=True) + # remove all split comparison files ("*.txt") but only keep the combined ones for file in glob(os.path.join(path_to_temp_dir, "*.txt")): - shutil.move(file, os.path.join(path_to_temp_dir, "comparison_files")) + os.remove(file) # get info from the signature files of selected genomes selected_sig_files = pd.read_csv(os.path.join(path_to_temp_dir, 'selected_result.tsv'), sep="\t", header=None) diff --git a/tests/test_hypothesis_recovery_src.py b/tests/test_hypothesis_recovery_src.py index 903db258..8227d360 100644 --- a/tests/test_hypothesis_recovery_src.py +++ b/tests/test_hypothesis_recovery_src.py @@ -40,6 +40,7 @@ def test_hypothesis_recovery(self, mock_get_exclusive_hashes, mock_get_organisms self.assertIsInstance(result, list) self.assertEqual(len(result), 2) + @patch('yacht.hypothesis_recovery_src.os.remove') @patch('pandas.read_csv') @patch('yacht.hypothesis_recovery_src.os.system') @patch('yacht.hypothesis_recovery_src.os.path.join') @@ -48,17 +49,22 @@ def test_hypothesis_recovery(self, mock_get_exclusive_hashes, mock_get_organisms @patch('yacht.hypothesis_recovery_src.zipfile.ZipFile') @patch('glob.glob') def test_get_organisms_with_nonzero_overlap(self, mock_glob, mock_zipfile, _, mock_os_listdir, - mock_os_path_join, mock_os_system, mock_read_csv): + mock_os_path_join, mock_os_system, mock_read_csv, mock_os_remove): mock_glob.return_value = ['training_sig_file_1.sig'] mock_os_listdir.return_value = ['sig_file'] mock_os_path_join.return_value = 'joined_path' mock_os_system.return_value = 0 - mock_read_csv.return_value = pd.DataFrame({'match_name': ['org1', 'org2']}) + mock_os_remove.return_value = None + # Mock reading CSV with the expected column structure + mock_read_csv.return_value = pd.DataFrame({ + 0: ['dummy_value1', 'dummy_value2'], # Unused in function logic + 1: [0, 1] # Indices that map to `manifest['organism_name']` + }) mock_zip_file_instance = mock_zipfile.return_value.__enter__.return_value mock_zip_file_instance.extractall.return_value = None - result = get_organisms_with_nonzero_overlap(self.mock_manifest, 'sample_file.zip', 10, 31, 4, + result = get_organisms_with_nonzero_overlap(self.mock_manifest, 'sample_file.zip', 4, '/path/to/genome_temp_dir', '/path/to/sample_temp_dir') self.assertIsInstance(result, list) From 3cef6df4215844e95f6a6b614fa5d599eb0e4dca Mon Sep 17 00:00:00 2001 From: Chunyu Ma Date: Tue, 10 Dec 2024 11:21:34 -0500 Subject: [PATCH 26/35] update the setup scripts --- MANIFEST.in | 1 + Makefile | 8 ++++---- build_windows.bat | 34 +++++++++++++++++++++++++++------- env/yacht_env.yml | 1 - setup.py | 19 ++++++++++++++----- 5 files changed, 46 insertions(+), 17 deletions(-) diff --git a/MANIFEST.in b/MANIFEST.in index 2774067a..6df8f35d 100644 --- a/MANIFEST.in +++ b/MANIFEST.in @@ -1,6 +1,7 @@ # Include C++ source files include src/cpp/*.cpp include src/cpp/*.hpp +include src/cpp/*.h # Include other necessary files include LICENSE.txt diff --git a/Makefile b/Makefile index a20ca068..0d6d31ba 100644 --- a/Makefile +++ b/Makefile @@ -7,14 +7,14 @@ SRC_DIR = src/cpp BIN_DIR = src/yacht # Source files -SRC_FILES = $(SRC_DIR)/yacht_train_core.cpp $(SRC_DIR)/utils.cpp $(SRC_DIR)/compute_similarity.cpp +SRC_FILES = $(SRC_DIR)/yacht_train_core.cpp $(SRC_DIR)/utils.cpp $(SRC_DIR)/yacht_run_compute_similarity.cpp # Object files OBJ_FILES = $(SRC_FILES:.cpp=.o) # target executable -TARGET1 = $(BIN_DIR)/run_yacht_train_core -TARGET2 = $(BIN_DIR)/run_compute_similarity +TARGET1 = $(BIN_DIR)/yacht_train_core +TARGET2 = $(BIN_DIR)/yacht_run_compute_similarity # Build rules all: $(TARGET1) $(TARGET2) @@ -23,7 +23,7 @@ $(TARGET1): $(OBJ_FILES) $(CXX) $(CXXFLAGS) $(SRC_DIR)/yacht_train_core.cpp $(SRC_DIR)/utils.cpp -o $(TARGET1) $(TARGET2): $(OBJ_FILES) - $(CXX) $(CXXFLAGS) $(SRC_DIR)/compute_similarity.cpp $(SRC_DIR)/utils.cpp -o $(TARGET2) + $(CXX) $(CXXFLAGS) $(SRC_DIR)/yacht_run_compute_similarity.cpp $(SRC_DIR)/utils.cpp -o $(TARGET2) %.o: %.cpp $(CXX) $(CXXFLAGS) -c $< -o $@ diff --git a/build_windows.bat b/build_windows.bat index e8eef706..6fd616d1 100644 --- a/build_windows.bat +++ b/build_windows.bat @@ -1,21 +1,41 @@ @echo off +setlocal enabledelayedexpansion -REM Set up paths for directories +rem Set up paths for directories set SRC_DIR=src\cpp set BIN_DIR=src\yacht -REM Create bin directory if it doesn't exist +rem Create bin directory if it doesn't exist if not exist %BIN_DIR% ( mkdir %BIN_DIR% ) -REM Compile the main.cpp file using g++ from MinGW or another suitable compiler -g++ -std=c++17 -Wsign-compare -Wall -O3 -o %BIN_DIR%\run_yacht_train_core.exe %SRC_DIR%\main.cpp +rem Compile source files into object files +set OBJ_FILES= +for %%f in (%SRC_DIR%\*.cpp) do ( + g++ -std=c++17 -Wall -O3 -Wsign-compare -c %%f -o %%~nf.o + if %errorlevel% neq 0 ( + echo Compilation failed for %%f! + exit /b %errorlevel% + ) + set OBJ_FILES=!OBJ_FILES! %%~nf.o +) + +rem Create yacht_train_core.exe +g++ %OBJ_FILES% -o %BIN_DIR%\yacht_train_core.exe +if %errorlevel% neq 0 ( + echo Linking failed for yacht_train_core.exe! + exit /b %errorlevel% +) -REM Check if compilation succeeded +rem Create yacht_run_compute_similarity.exe +g++ %OBJ_FILES% -o %BIN_DIR%\yacht_run_compute_similarity.exe if %errorlevel% neq 0 ( - echo Compilation failed! + echo Linking failed for yacht_run_compute_similarity.exe! exit /b %errorlevel% ) -echo Compilation successful. Executable created at %BIN_DIR%\run_yacht_train_core.exe \ No newline at end of file +rem Clean up object files +del *.o + +echo Compilation successful. Executables created in %BIN_DIR%. \ No newline at end of file diff --git a/env/yacht_env.yml b/env/yacht_env.yml index e69a9716..0b04259b 100644 --- a/env/yacht_env.yml +++ b/env/yacht_env.yml @@ -20,7 +20,6 @@ dependencies: - pytaxonkit - requests - pip - - sourmash_plugin_branchwater - pip: - openpyxl - ruff \ No newline at end of file diff --git a/setup.py b/setup.py index b32557fd..fcc905dc 100644 --- a/setup.py +++ b/setup.py @@ -30,15 +30,24 @@ def run(self): print(f"Error during Unix compilation: {e}") raise e - # Move the compiled binary to the correct location for packaging - compiled_binary = os.path.join('src', 'yacht', 'run_yacht_train_core') - if os.path.exists(compiled_binary): + # Move the compiled binary files to the correct location for packaging + compiled_binary1 = os.path.join('src', 'yacht', 'yacht_train_core') + compiled_binary2 = os.path.join('src', 'yacht', 'yacht_run_compute_similarity') + if os.path.exists(compiled_binary1): destination = os.path.join(self.build_lib, 'yacht') os.makedirs(destination, exist_ok=True) - shutil.move(compiled_binary, destination) + shutil.move(compiled_binary1, destination) else: print("Compiled binary not found after build step.") - raise FileNotFoundError("The executable 'run_yacht_train_core' was not generated successfully.") + raise FileNotFoundError("The executable 'yacht_train_core' was not generated successfully.") + + if os.path.exists(compiled_binary2): + destination = os.path.join(self.build_lib, 'yacht') + os.makedirs(destination, exist_ok=True) + shutil.move(compiled_binary2, destination) + else: + print("Compiled binary not found after build step.") + raise FileNotFoundError("The executable 'yacht_run_compute_similarity' was not generated successfully.") # Run the usual build_ext logic (necessary to continue with setuptools) super().run() From 22ad07f8f1d36e7ba07297f55143fa68e9a2b809 Mon Sep 17 00:00:00 2001 From: Chunyu Ma Date: Tue, 10 Dec 2024 12:18:38 -0500 Subject: [PATCH 27/35] try fixiing the pthread_create issue --- Makefile | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/Makefile b/Makefile index 0d6d31ba..a7dc5995 100644 --- a/Makefile +++ b/Makefile @@ -12,21 +12,21 @@ SRC_FILES = $(SRC_DIR)/yacht_train_core.cpp $(SRC_DIR)/utils.cpp $(SRC_DIR)/yach # Object files OBJ_FILES = $(SRC_FILES:.cpp=.o) -# target executable +# Target executables TARGET1 = $(BIN_DIR)/yacht_train_core TARGET2 = $(BIN_DIR)/yacht_run_compute_similarity # Build rules all: $(TARGET1) $(TARGET2) -$(TARGET1): $(OBJ_FILES) - $(CXX) $(CXXFLAGS) $(SRC_DIR)/yacht_train_core.cpp $(SRC_DIR)/utils.cpp -o $(TARGET1) +$(TARGET1): $(SRC_DIR)/yacht_train_core.cpp $(SRC_DIR)/utils.cpp + $(CXX) $(CXXFLAGS) -pthread $(SRC_DIR)/yacht_train_core.cpp $(SRC_DIR)/utils.cpp -o $(TARGET1) -$(TARGET2): $(OBJ_FILES) - $(CXX) $(CXXFLAGS) $(SRC_DIR)/yacht_run_compute_similarity.cpp $(SRC_DIR)/utils.cpp -o $(TARGET2) +$(TARGET2): $(SRC_DIR)/yacht_run_compute_similarity.cpp $(SRC_DIR)/utils.cpp + $(CXX) $(CXXFLAGS) -pthread $(SRC_DIR)/yacht_run_compute_similarity.cpp $(SRC_DIR)/utils.cpp -o $(TARGET2) %.o: %.cpp - $(CXX) $(CXXFLAGS) -c $< -o $@ + $(CXX) $(CXXFLAGS) -pthread -c $< -o $@ clean: rm -f $(OBJ_FILES) $(TARGET1) $(TARGET2) From 20d19b42e60084f962ee9a8914f3ba05ce6a75d6 Mon Sep 17 00:00:00 2001 From: Chunyu Ma Date: Tue, 10 Dec 2024 13:03:18 -0500 Subject: [PATCH 28/35] add conftest.py file and mark slow test functions --- tests/test_y_integration_tests.py | 2 ++ 1 file changed, 2 insertions(+) diff --git a/tests/test_y_integration_tests.py b/tests/test_y_integration_tests.py index 851bad1e..3dd80095 100644 --- a/tests/test_y_integration_tests.py +++ b/tests/test_y_integration_tests.py @@ -2,6 +2,7 @@ import tempfile import json from os.path import exists +import pytest cpath = os.path.dirname(os.path.realpath(__file__)) project_path = os.path.join(cpath,'..') @@ -77,6 +78,7 @@ def test_run_pretrained_ref_db(): res = subprocess.run(cmd, shell=True, check=True) assert res.returncode == 0 +@pytest.mark.slow def test_run_yacht_pretrained_ref_db(): cmd = f"yacht run --json ./gtdb-rs214-reps.k31_0.9995_pretrained/gtdb-rs214-reps.k31_0.9995_config.json --sample_file '{project_path}/tests/testdata/sample.sig.zip' --significance 0.99 --num_threads 32 --min_coverage_list 1 0.6 0.2 0.1 --out ./result_pretrained.xlsx" res = subprocess.run(cmd, shell=True, check=True) From 5906df0b92e5ddac4b48cab28e23be1639a261ef Mon Sep 17 00:00:00 2001 From: Chunyu Ma Date: Tue, 10 Dec 2024 13:26:25 -0500 Subject: [PATCH 29/35] add conftest file --- tests/conftest.py | 14 ++++++++++++++ 1 file changed, 14 insertions(+) create mode 100644 tests/conftest.py diff --git a/tests/conftest.py b/tests/conftest.py new file mode 100644 index 00000000..1159d616 --- /dev/null +++ b/tests/conftest.py @@ -0,0 +1,14 @@ +import pytest + +def pytest_addoption(parser): + parser.addoption( + "--runslow", action="store_true", default=False, help="Run slow tests" + ) + +def pytest_collection_modifyitems(config, items): + if not config.getoption("--runslow"): + # Skip slow tests unless --runslow is specified + skip_slow = pytest.mark.skip(reason="Need --runslow option to run") + for item in items: + if "slow" in item.keywords: + item.add_marker(skip_slow) \ No newline at end of file From 9a5b3d1a760cfd495e34413a41fb78d4213524a1 Mon Sep 17 00:00:00 2001 From: Chunyu Ma Date: Tue, 10 Dec 2024 13:43:24 -0500 Subject: [PATCH 30/35] update version number --- conda_recipe/meta.yaml | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/conda_recipe/meta.yaml b/conda_recipe/meta.yaml index d3344d87..e7df44bc 100644 --- a/conda_recipe/meta.yaml +++ b/conda_recipe/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.3.0" %} +{% set version = "1.4.0" %} package: name: yacht @@ -52,7 +52,6 @@ requirements: - pytaxonkit - openpyxl - ruff - - sourmash_plugin_branchwater test: commands: From f4e0a0143987f84cadd075c07c9c503caa990563 Mon Sep 17 00:00:00 2001 From: Chunyu Ma Date: Tue, 10 Dec 2024 13:52:24 -0500 Subject: [PATCH 31/35] update sha256 code --- conda_recipe/meta.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/conda_recipe/meta.yaml b/conda_recipe/meta.yaml index e7df44bc..fd38ec01 100644 --- a/conda_recipe/meta.yaml +++ b/conda_recipe/meta.yaml @@ -6,7 +6,7 @@ package: source: url: https://github.com/KoslickiLab/YACHT/releases/download/v{{ version }}/yacht-{{ version }}.tar.gz - sha256: 68d272daeb70ed7390aa2d468934dc4bf0aa9a021f99fe99847b8a664e8ac8cf + sha256: 3558abd6d1084f0679ffbd8b1a8592ec7e0e642e201b5fcc0e34eaa62ae7e705 build: number: 0 From 91b1357c527fdbbc46c092128f7dbfb7e78c953d Mon Sep 17 00:00:00 2001 From: Chunyu Ma Date: Tue, 10 Dec 2024 13:58:22 -0500 Subject: [PATCH 32/35] update conda_recipe/meta.yaml --- conda_recipe/meta.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/conda_recipe/meta.yaml b/conda_recipe/meta.yaml index fd38ec01..fd73814d 100644 --- a/conda_recipe/meta.yaml +++ b/conda_recipe/meta.yaml @@ -10,7 +10,7 @@ source: build: number: 0 - skip: True # [osx] + noarch: python script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv" run_exports: - {{ pin_subpackage('yacht') }} From ff365dfc50d328176647a613cff3a85e4fdc19d2 Mon Sep 17 00:00:00 2001 From: Chunyu Ma Date: Tue, 10 Dec 2024 14:44:17 -0500 Subject: [PATCH 33/35] update conda_recipe/meta.yaml --- conda_recipe/meta.yaml | 1 - 1 file changed, 1 deletion(-) diff --git a/conda_recipe/meta.yaml b/conda_recipe/meta.yaml index fd73814d..538cee21 100644 --- a/conda_recipe/meta.yaml +++ b/conda_recipe/meta.yaml @@ -10,7 +10,6 @@ source: build: number: 0 - noarch: python script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv" run_exports: - {{ pin_subpackage('yacht') }} From a906ed24642cbb6501e63fbec802f31c2d298eda Mon Sep 17 00:00:00 2001 From: Chunyu Ma Date: Tue, 10 Dec 2024 15:59:37 -0500 Subject: [PATCH 34/35] add some documents for the new parameters --- src/yacht/hypothesis_recovery_src.py | 1 + src/yacht/utils.py | 2 ++ 2 files changed, 3 insertions(+) diff --git a/src/yacht/hypothesis_recovery_src.py b/src/yacht/hypothesis_recovery_src.py index 4736e7fb..6b1fdb07 100644 --- a/src/yacht/hypothesis_recovery_src.py +++ b/src/yacht/hypothesis_recovery_src.py @@ -52,6 +52,7 @@ def get_organisms_with_nonzero_overlap( :param sample_file: string (path to the sample signature file) :param num_threads: int (number of threads to use for parallelization) :param path_to_genome_temp_dir: string (path to the genome temporary directory generated by the training step) + :param num_genome_threshold : int (a threshold to detmine the number of passes/block size for the similarity algorithm) :param path_to_sample_temp_dir: string (path to the sample temporary directory) :return: a list of organism names that have non-zero overlap with the sample """ diff --git a/src/yacht/utils.py b/src/yacht/utils.py index ff47989b..81a010b2 100644 --- a/src/yacht/utils.py +++ b/src/yacht/utils.py @@ -119,6 +119,8 @@ def run_yacht_train_core( :param ani_thresh: float (threshold for ANI, below which we consider two organisms to be distinct) :param ksize: int (size of kmer) :param path_to_temp_dir: string (path to the folder to store the intermediate files) + :param sig_info_dict: a dictionary mapping signature name to a tuple (md5sum, minhash mean abundance, minhash_hashes_len, minhash scaled, raw file path) + :param num_genome_threshold : int (a threshold to detmine the number of passes/block size for the similarity algorithm) :return: a dataframe containing the selected reference signature information """ From 9784812477b87a405476d4812a4de35a711692db Mon Sep 17 00:00:00 2001 From: Chunyu Ma Date: Tue, 10 Dec 2024 16:54:01 -0500 Subject: [PATCH 35/35] change database 0.9995 to 0.80 for faster test --- tests/test_y_integration_tests.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/tests/test_y_integration_tests.py b/tests/test_y_integration_tests.py index 3dd80095..d7f2cf8a 100644 --- a/tests/test_y_integration_tests.py +++ b/tests/test_y_integration_tests.py @@ -74,13 +74,13 @@ def test_run_yacht(): assert exists('result.xlsx') def test_run_pretrained_ref_db(): - cmd = "yacht download pretrained_ref_db --database gtdb --db_version rs214 --k 31 --ani_thresh 0.9995 --outfolder ./" + cmd = "yacht download pretrained_ref_db --database gtdb --db_version rs214 --k 31 --ani_thresh 0.80 --outfolder ./" res = subprocess.run(cmd, shell=True, check=True) assert res.returncode == 0 -@pytest.mark.slow +# @pytest.mark.slow def test_run_yacht_pretrained_ref_db(): - cmd = f"yacht run --json ./gtdb-rs214-reps.k31_0.9995_pretrained/gtdb-rs214-reps.k31_0.9995_config.json --sample_file '{project_path}/tests/testdata/sample.sig.zip' --significance 0.99 --num_threads 32 --min_coverage_list 1 0.6 0.2 0.1 --out ./result_pretrained.xlsx" + cmd = f"yacht run --json ./gtdb-rs214-reps.k31_0.80_pretrained/gtdb-rs214-reps.k31_0.80_config.json --sample_file '{project_path}/tests/testdata/sample.sig.zip' --significance 0.99 --num_threads 32 --min_coverage_list 1 0.6 0.2 0.1 --out ./result_pretrained.xlsx" res = subprocess.run(cmd, shell=True, check=True) assert res.returncode == 0