Day 12 - Optimisation 1

[martinjrobins]

• Write content:
  • refresher on numpy vectorisation (emphasis that there are many ways to speed up python code rather than jumping directly to C++)
  • Technologies:
    • CMake
    • pybind11
  • Setup compilation:
    • explain the provided template repository
  • wrapping functions
  • wrapping classes
  • transferring arrays: Numpy <=> std::vector, Numpy <=> Eigen
• Write practical exercises
  • draft exercises
  • write starting python code for cell simulation
  • write starting C++ code for cell simulation
• Write solutions
  • write vectorised python code for cell simulation
  • write C++ functions and wrappers