Participants were confused that in the dimensionality reduction section points are coloured by clusters, but we don't specify clusters, and in fact haven't covered clustering at this point.
This is because our object from the normalisation section carries over clusters, and Seurat automatically assigns them as Idents to colour by.
Task: Remove clusters from the object before saving to precomputed
Participants were confused that in the dimensionality reduction section points are coloured by clusters, but we don't specify clusters, and in fact haven't covered clustering at this point.
This is because our object from the normalisation section carries over clusters, and Seurat automatically assigns them as Idents to colour by.
Task: Remove clusters from the object before saving to precomputed