Skip to content

GSL ERROR: matrix is singular in lu.c at line 449 errno 1 #306

Description

@huma-cloud

I’m getting this error while running GEMMA Linear Mixed Model (LMM) association analysis.
$gemma -bfile $plink_file -p $phenotype_file -k $kinship_file -lmm 1 -c $covariate_file -o $output_name

I changed the covariate table from PC1, PC2, PC3, phenotype1, phenotype2, phenotype3 to Breed, PC1, PC2, PC3, phenotype1, phenotype2, phenotype3. After changing the covariate table, I got this error. I just want to add a fixed effect.
what is the solution of this error?

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions