Issues

• Use scrapper in vignettes as scater and scran are deprecated

  documentation
  pachterlab/voyager#58 · Filter by author lambdamoses opened on May 6, 2026
  

• IOError: Unexpected end of stream while "Saving geometries to parquet files"

  pachterlab/voyager#57 · Filter by author dpschreiner opened on Dec 16, 2025
  2

• Check order of spatialCoords sf_polygons in SpatialFeatureExperiment Constructor

  pachterlab/voyager#54 · Filter by author swbioinf opened on Jul 9, 2025

• Try spdep's new spatialdelta for spatial -omics

  Feature

  pachterlab/voyager#53 · Filter by author lambdamoses opened on Jun 27, 2025

• Vignette for TMA

  documentation
  Feature

  pachterlab/voyager#52 · Filter by author lambdamoses opened on Jun 27, 2025

• Vignette for Xenium 5k

  documentation
  Feature

  pachterlab/voyager#51 · Filter by author lambdamoses opened on Jun 27, 2025

• no slot of name "ptr" for this object of class "SpatRaster"

  pachterlab/voyager#50 · Filter by author Elena983 opened on Apr 5, 2025
  9

• Error readCosMX

  pachterlab/voyager#49 · Filter by author ccruizm opened on Mar 27, 2025
  2

• error using tx_file in plotGeometry

  pachterlab/voyager#48 · Filter by author heziqing opened on Mar 17, 2025
  2

• Add argument in plotSpatialFeature and related functions to highlight cells

  pachterlab/voyager#45 · Filter by author lambdamoses opened on Feb 7, 2025

• Adjust panel size according to bbox when plotting multiple samples

  enhancementplotting
  pachterlab/voyager#42 · Filter by author lambdamoses opened on Dec 20, 2024

• Loading Pre-Annotated Regions for Visium Analysis

  pachterlab/voyager#41 · Filter by author abadgerw opened on Nov 24, 2024
  5

• New argument(s) in plotSpatialFeature to selectively plot cells or spots

  intermediateplotting
  pachterlab/voyager#39 · Filter by author lambdamoses opened on Nov 14, 2024

• A bug of Blank plots in workflow: Seurat V5 (with image) ->toSpatialFeatureExperiment -> plotSpatialFeature

  pachterlab/voyager#34 · Filter by author huiyijiangling opened on Jul 6, 2024
  1

• make VisiumHD vignettes

  pachterlab/voyager#33 · Filter by author alikhuseynov opened on May 31, 2024
  

• proseg output support

  pachterlab/voyager#32 · Filter by author cstrlln opened on May 15, 2024
  10

• Vignette about multi-scale analyses

  documentationenhancement
  pachterlab/voyager#31 · Filter by author lambdamoses opened on Mar 22, 2024
  

• Vignette for Tomo-seq

  documentationintermediate
  pachterlab/voyager#27 · Filter by author lambdamoses opened on Mar 4, 2024

• Vignette using multiple samples

  advanceddocumentationenhancement
  pachterlab/voyager#25 · Filter by author lambdamoses opened on Mar 3, 2024
  4

  

• Write alt text for vignette figures

  beginnerdocumentation
  pachterlab/voyager#24 · Filter by author lambdamoses opened on Mar 1, 2024

• Plot scale bar when unit = "micron"

  enhancementintermediateplotting
  pachterlab/voyager#23 · Filter by author lambdamoses opened on Feb 23, 2024

• Option to plot image in a separate adjacent panel rather than behind cells/spots

  enhancementintermediateplotting
  pachterlab/voyager#21 · Filter by author lambdamoses opened on Feb 10, 2024
  

• Specify whether bivariate method in SFEMethod class is symmetric

  advancedenhancement
  pachterlab/voyager#18 · Filter by author lambdamoses opened on Feb 5, 2024