Issues

Headless JSON API mode for external tool integration
rqtl/qtl2#246 · opened on Jul 14, 2026
1
Create 4-way cross type
rqtl/qtl2#200 · opened on Jul 18, 2021
SE of estimated heritability
rqtl/qtl2#193 · opened on Mar 4, 2021
1
Multi-core in scan1snps gives error about k_loco
rqtl/qtl2#177 · opened on Oct 12, 2020
3
Encoding of genotypes is confusing and error prone
rqtl/qtl2#175 · opened on Sep 17, 2020
Check of compatibility of map and genoprobs
rqtl/qtl2#165 · opened on Jun 23, 2020
1
scan1boot: bootstrap scan1()
rqtl/qtl2#159 · opened on May 27, 2020
Add tutorial explaining the insides of scan1snps()
rqtl/qtl2#156 · opened on Apr 16, 2020
Problem with multi-core in scan1 on Windows
rqtl/qtl2#150 · opened on Feb 25, 2020
Can we perform cim() using R/qtl2?
rqtl/qtl2#108 · opened on Mar 28, 2019
1
Tutorial on artifacts
rqtl/qtl2#88 · opened on Nov 22, 2018
5
Per-chromosome heritability estimates
rqtl/qtl2#59 · opened on May 28, 2018
1
scan1() with model="binary" giving lots of NAs
rqtl/qtl2#55 · opened on May 11, 2018
3
Implement weights for LMM in scan1blup
rqtl/qtl2#52 · opened on May 4, 2018
1
scan1perm: add option for LMM (with kinship) to permute rotated phenotypes
rqtl/qtl2#41 · opened on Mar 6, 2018
Estimation of heritability due to QTL
rqtl/qtl2#40 · opened on Mar 1, 2018
Add cross type for partially-inbred riself4
rqtl/qtl2#27 · opened on Jan 10, 2018
effects in peak markers
rqtl/qtl2#14 · opened on Dec 6, 2017
1
Function to turn tables into cross2 object
rqtl/qtl2#12 · opened on Dec 6, 2017
3