From e860fa29f3ad87d4f6a689fcc7b8a684dc1af05f Mon Sep 17 00:00:00 2001 From: Phil Schaf Date: Wed, 20 May 2026 18:54:30 +0200 Subject: [PATCH] docs: adapt to new upstream URLs --- README.md | 2 +- hatch.toml | 1 + packages/anndata/meta.yaml | 4 ++-- packages/scanpy/meta.yaml | 4 ++-- 4 files changed, 6 insertions(+), 5 deletions(-) diff --git a/README.md b/README.md index 8c3ca50d..964d478b 100644 --- a/README.md +++ b/README.md @@ -65,4 +65,4 @@ How does the package use scverse data structures (please describe in a few sente [^2]: Continuous integration means that software tests are automatically executed on every push to the git repository. This guarantees they are always run and that they are run in a clean environment. Scverse ecosystem packages most commonly use [GitHub Actions](https://github.com/features/actions) for CI. For an example, check out our [cookiecutter template](https://github.com/scverse/cookiecutter-scverse). -[^3]: By API documentation, we mean an overview of _all_ public functions provided a package, with documentation of their parameters. For an example, see the [Scanpy documentation](https://scanpy.readthedocs.io/page/api/preprocessing.html). In simple cases, this can be done manually in a README file. For anything more complex, we recommend the [Sphinx Autodoc plugin](https://www.sphinx-doc.org/en/master/usage/extensions/autodoc.html) +[^3]: By API documentation, we mean an overview of _all_ public functions provided a package, with documentation of their parameters. For an example, see the [Scanpy documentation](https://scanpy.scverse.org/page/api/preprocessing.html). In simple cases, this can be done manually in a README file. For anything more complex, we recommend the [Sphinx Autodoc plugin](https://www.sphinx-doc.org/en/master/usage/extensions/autodoc.html) diff --git a/hatch.toml b/hatch.toml index 1e510fd2..1394ea02 100644 --- a/hatch.toml +++ b/hatch.toml @@ -1,3 +1,4 @@ [envs.default] +python = "3.14" # this allows to e.g. `hatch run validate-registry` in the root directory workspace.members = ["scripts"] diff --git a/packages/anndata/meta.yaml b/packages/anndata/meta.yaml index 578f75d9..b3aee419 100644 --- a/packages/anndata/meta.yaml +++ b/packages/anndata/meta.yaml @@ -4,8 +4,8 @@ description: | positioned between pandas and xarray. anndata offers a broad range of computationally efficient features including, among others, sparse data support, lazy operations, and GPU support. project_home: https://github.com/scverse/anndata -documentation_home: https://anndata.readthedocs.io/ -tutorials_home: https://anndata.readthedocs.io/page/tutorials/ +documentation_home: https://anndata.scverse.org/ +tutorials_home: https://anndata.scverse.org/page/tutorials/ publications: - 10.1101/2021.12.16.473007 install: diff --git a/packages/scanpy/meta.yaml b/packages/scanpy/meta.yaml index c799c640..5e893708 100644 --- a/packages/scanpy/meta.yaml +++ b/packages/scanpy/meta.yaml @@ -5,8 +5,8 @@ description: | and differential expression testing. The Python-based implementation efficiently deals with datasets of more than one million cells. project_home: https://github.com/scverse/scanpy -documentation_home: https://scanpy.readthedocs.io/ -tutorials_home: https://scanpy.readthedocs.io/page/tutorials.html +documentation_home: https://scanpy.scverse.org/ +tutorials_home: https://scanpy.scverse.org/page/tutorials.html publications: - 10.1186/s13059-017-1382-0 install: