Update FIBContext and backend logic for detecting, handling and making GIFs of drift correction images#796
Draft
Update FIBContext and backend logic for detecting, handling and making GIFs of drift correction images#796
Conversation
…ow module and optimised input parameters required
![github-advanced-security[bot]](https://avatars.githubusercontent.com/in/57789?s=60&v=4){kind=small}
| # Change permissions for folders in the visit directory and onwards | ||
| for current_path in list(reversed(output_dir.parents))[visit_index + 1 :]: | ||
| try: | ||
| os.chmod(current_path, mode=machine_config.mkdir_chmod) |
| # Create the directory structure | ||
| if not (output_dir := gif_params.output_file.parent).exists(): | ||
| output_dir.mkdir(parents=True) | ||
| logger.debug(f"Created output directory {output_dir}") |
| os.chmod(current_path, mode=machine_config.mkdir_chmod) | ||
| except PermissionError: | ||
| logger.warning( | ||
| f"Insufficient permissions to modify directory {current_path}" |
| duration=30, | ||
| loop=0, | ||
| ) | ||
| logger.info(f"Created GIF file {gif_params.output_file}") |
Codecov Report❌ Patch coverage is Additional details and impacted files@@ Coverage Diff @@
## main #796 +/- ##
==========================================
+ Coverage 52.14% 52.26% +0.12%
==========================================
Files 96 96
Lines 10239 10295 +56
Branches 1340 1353 +13
==========================================
+ Hits 5339 5381 +42
- Misses 4627 4639 +12
- Partials 273 275 +2 🚀 New features to boost your workflow:
|
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
2 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
No description provided.