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Pull requests: NCATSTranslator/Babel

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Pull requests list

Add MP, kept disjoint from HP
#886 opened Jun 30, 2026 by gaurav Collaborator Loading…
Add babel-clique-diff: build-vs-build compendium clique diff tool
#885 opened Jun 30, 2026 by gaurav Collaborator Loading…
Activate the MONDO close-match guard in disease glom (with build-vs-build clique-diff tool)
#883 opened Jun 29, 2026 by gaurav Collaborator Loading…
1
build(deps-dev): bump snakefmt from 2.0.2 to 2.0.3 dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#881 opened Jun 28, 2026 by dependabot Bot Loading…
build(deps-dev): bump rumdl from 0.2.20 to 0.2.24 dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#880 opened Jun 28, 2026 by dependabot Bot Loading…
build(deps-dev): bump ruff from 0.15.18 to 0.15.20 dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#879 opened Jun 28, 2026 by dependabot Bot Loading…
build(deps-dev): update setuptools requirement from >=64 to >=82.0.1 dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#878 opened Jun 28, 2026 by dependabot Bot Loading…
drugchemical: record dropped conflation pairs to a retained exclusion report (#754)
#874 opened Jun 24, 2026 by gaurav Collaborator • Draft
fixed issue #827 with DRUGBANK:DB10626 preferred name
#872 opened Jun 23, 2026 by hyi Contributor Loading…
slurm: right-size default SLURM resources from babel-1.17 benchmarks
#869 opened Jun 20, 2026 by gaurav Collaborator Loading…
1 task
1
fix issue #744 by handling malformed NCBIGene source alias field
#853 opened Jun 16, 2026 by hyi Contributor Loading…
Estimate drugprotein
#848 opened Jun 9, 2026 by gaurav Collaborator • Draft
SLURM performance tracking and resource right-sizing
#833 opened Jun 5, 2026 by gaurav Collaborator Loading…
7
Add protein/chemical overlap report
#830 opened Jun 4, 2026 by gaurav Collaborator • Draft
docs: add temporary plan for centralizing MeSH tree-number partitioning
#812 opened May 29, 2026 by gaurav Collaborator • Draft
Unify UMLS semantic-type to Biolink-class mappings into one registry
#804 opened May 29, 2026 by gaurav Collaborator Loading…
Add MP (Mammalian Phenotype Ontology) as a disease/phenotype source
#790 opened May 26, 2026 by gaurav Collaborator Loading…
1
8
Add EMAPA as an anatomy source
#781 opened May 20, 2026 by gaurav Collaborator Loading…
2 of 7 tasks
2
Pipeline tests for labels
#755 opened May 13, 2026 by gaurav Collaborator • Draft
Add config/rule drift checks for all semantic-type id lists
#728 opened Apr 22, 2026 by gaurav Collaborator Loading… Improved testing
2
Add near-end-to-end tests for write_compendium() label selection
#726 opened Apr 18, 2026 by gaurav Collaborator Loading… Improved testing
5
Export intermediate concords, identifiers, and metadata as Parquet files
#704 opened Apr 2, 2026 by gaurav Collaborator Loading…
3 tasks done
@gaurav
13
Add conflation taxon report
#697 opened Mar 17, 2026 by gaurav Collaborator • Draft Improved testing
1
Add UMLS report generator
#683 opened Mar 5, 2026 by gaurav Collaborator • Draft
6
Add generic SQL report system for drop-in .sql report files
#671 opened Feb 24, 2026 by gaurav Collaborator • Draft
1 task
Improved testing
10
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