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dashboard exceptions

Brian edited this page Sep 11, 2020 · 1 revision

inconsistent_entityName

The majority of workspaces in this consortium use a {'entityName': ...} structure.  This workspace does not.

missing_subjects

This workspace has no subjects.

missing_sequence

The majority of workspaces in this consortium use a sequence entity to link sample to blobs(files).  This workspace does not.

dbgap_sample_count_mismatch

The count of samples in all workspaces tagged with this accession does not match the length of DbGap/Study/SampleList provided by dbGap's API.

missing_accession

This workspace does not have an accession.

inconsistent_subject

The majority of workspaces in this consortium use a consistent key in the sample to refer to the subject.  This workspace does not.
* For CCDG this is a misspelling of 'participant'.
* For CMG this is refers to inconsistent use of '01-subject_id'.

missing_samples

At least one subject in this workspace is missing a sample.

missing_schema

The terra API (list_entity_types)[https://github.com/broadinstitute/fiss/blob/0440e4822a49c393e65964d9dedaa6d4828587bd/firecloud/api.py#L180] returned null.

missing_blobs

At least one sample in this workspace is missing a blob.