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Feature/accounting protected aggregators
#81Hugemiler opened Oct 15, 2026
1
Add --use-custom-database option to skip database version checks
#79sagun98 opened Sep 24, 2026Contributor
Fix subject coverage normalization and per-read unaligned counts
#78sagun98 opened Sep 2, 2026Contributor
1
Updates for Metaphlan 4.2 compatibility
#77nearinj opened Aug 25, 2026
1
Allow overriding the MetaPhlAn version pin during install
#76seandavi opened Aug 6, 2026
Report taxa selected by the prescreen that ChocoPhlAn cannot serve
#75seandavi opened Aug 6, 2026
Verify and pin the MetaPhlAn database HUMAnN actually uses
#74seandavi opened Aug 6, 2026
Parallelize diamond alignment + input decompression, compress intermediates
#73AlbertoLupatin opened Jun 4, 2026
correct link in readme
#69SilasK opened Aug 29, 2025
Fix MetaPhlAn link in Readme
#68simanjo opened Aug 1, 2025
Update for MetaPhlAn 4.2 compatability
#67zzkt opened Jun 7, 2025
1
Add support for a user config file
#65tonykew opened Feb 21, 2025
typo in utils.py
#61SilasK opened Apr 10, 2024
humann_genefamilies_genus_level: Fix a dictionary parsing and add functional test
#26bebatut opened Apr 23, 2021
Lower peak memory usage with sqlite3
#21wbazant opened Feb 11, 2021
2
Add --threads to bowtie-index command
#16aeschriefer opened Aug 28, 2020