Issues

• Variant calling mismatch

  datacarpentry/wrangling-genomics#265 · Filter by author sstevens2 opened on Aug 8, 2025

• 02-quality-control: clarification for transfer data from AWS to local desktop

  datacarpentry/wrangling-genomics#258 · Filter by author youyaqi opened on Jun 19, 2024

• 02-quality-control: clarification for paired-end data

  datacarpentry/wrangling-genomics#257 · Filter by author youyaqi opened on Jun 19, 2024

• Update software versions

  datacarpentry/wrangling-genomics#246 · Filter by author bkmgit opened on Jul 23, 2023

• Links need to be fixed in CONTRIBUTING.md

  datacarpentry/wrangling-genomics#243 · Filter by author tobyhodges opened on Jun 2, 2023

• Grammatical / typo errors in Trimming and Filtering

  datacarpentry/wrangling-genomics#237 · Filter by author anniewest opened on Dec 13, 2022

• Add alt text for images included in the lesson for improved accessibility

  datacarpentry/wrangling-genomics#236 · Filter by author mellamosummer opened on Dec 7, 2022

• Consider updating the trimming tool to something a bit friendlier

  datacarpentry/wrangling-genomics#232 · Filter by author JCSzamosi opened on Jun 24, 2022
  4

• Need jump lists (anchors) for headings

  datacarpentry/wrangling-genomics#230 · Filter by author annajiat opened on Jan 20, 2022

• Lesson Contribution: Assessing Read Quality

  datacarpentry/wrangling-genomics#224 · Filter by author Talishask opened on Jul 21, 2021
  1

• Where does the build recipe for the 'dataCgen-qc' AMI live?

  datacarpentry/wrangling-genomics#221 · Filter by author willfurnass opened on Jun 3, 2021

• Assessing Read Quality: Improve the visualisation of Phred Quality Scores

  datacarpentry/wrangling-genomics#220 · Filter by author theheking opened on Apr 16, 2021
  1

• Adapt trimmomatic command

  datacarpentry/wrangling-genomics#219 · Filter by author larahurban opened on Mar 25, 2021

• Use of SRA Explorer to Download FastQC Files ?

  datacarpentry/wrangling-genomics#217 · Filter by author jcjimbo opened on Nov 3, 2020

• Add the use of MultiQC to combine fastqc file in section 02-quality-control

  datacarpentry/wrangling-genomics#213 · Filter by author ggrimes opened on Jun 26, 2020

• Variant Calling Workflow: example has incorrect samtool sort options and param

  datacarpentry/wrangling-genomics#211 · Filter by author msuhovec opened on Mar 5, 2020
  1

• AWS AMI missing fastqc and related tools

  datacarpentry/wrangling-genomics#209 · Filter by author tejashree1modak opened on Jan 28, 2020
  1

• SRR2584866_final_variants.vcf is missing "results" data

  datacarpentry/wrangling-genomics#200 · Filter by author hoytpr opened on Nov 12, 2019

• Use of touch in "Automating a Variant Calling Workflow" lesson in Data Wrangling and Processing for Genomics

  datacarpentry/wrangling-genomics#197 · Filter by author cpaisie opened on Oct 23, 2019

• Wording of aligner choice in lesson 04-variant_calling

  datacarpentry/wrangling-genomics#189 · Filter by author JanaSperschneider opened on Sep 15, 2019
  1

• I have a problem with executing variant call

  datacarpentry/wrangling-genomics#188 · Filter by author otienolwanga opened on Sep 14, 2019
  7

• wrangling-genomics/01-background: lack of clarity in "View the Metadata" section (omission)

  datacarpentry/wrangling-genomics#182 · Filter by author ousodaniel opened on Jun 24, 2019

• wrangling-genomics/02-quality-control: scp command needs clarity

  datacarpentry/wrangling-genomics#180 · Filter by author hoytpr opened on Jun 12, 2019

• Shell scripting not effectively handled

  datacarpentry/wrangling-genomics#174 · Filter by author sstevens2 opened on Jun 1, 2019
  5

• Why import files from ENA

  datacarpentry/wrangling-genomics#173 · Filter by author JasonJWilliamsNY opened on May 30, 2019