SQL

[TeunHuijben]

Apart from a long list of tracksdata changes that were necessary, because it secretly handled the SQL backend differently from the in memory backends, on the funtracks side, we only need a few changes:

• t node attribute is not mutable, so remove from revive_attrs in DeleteNode
• Tracks.add_feature acts on graph_full
• give the td_utils the option to pick a backend
• a temporary tracksdata pin to the graph-views branch, until it gets merged + released

[codecov]

Codecov Report

❌ Patch coverage is 96.42857% with 1 line in your changes missing coverage. Please review.
✅ Project coverage is 93.95%. Comparing base (8ad0413) to head (e9f9d69).

Files with missing lines	Patch %	Lines
src/funtracks/utils/tracksdata_utils.py	93.33%	1 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #270      +/-   ##
==========================================
- Coverage   93.96%   93.95%   -0.02%     
==========================================
  Files          60       60              
  Lines        3582     3589       +7     
==========================================
+ Hits         3366     3372       +6     
- Misses        216      217       +1     

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[TeunHuijben]

Updates:

• funtracks is now fully compatible with two backends (memory and sql), where the default graph backend is memory (tracksdata's IndexedRXGraph).
• all tests run over both backends (a fixture in conftest.py ensures this)

[cmalinmayor]

Just wondering about the tempdir db location, since if you close the app and wait, it goes away? Also, how do we re-open an existing sql graph?

Otherwise looks great! You can merge after you decide where to save, I trust your judgement. 🎉

[TeunHuijben]

Regarding tmpdir, when a database path is provided, the db is saved there and persists. This is what napari_track_edit should and will do

[TeunHuijben]

Currently blocked 🔴 by royerlab/tracksdata#325