getCPUELength - variable name returned

[einarhjorleifsson]

At least these survey-years-quarters give variable name HaulDur xsi:nil="true" rather than just HaulDur

library(icesDatras)
getCPUELength("SWC-IBTS", 2012, 1) |> dplyr::glimpse()
getCPUELength("SWC-IBTS", 2012, 4) |> dplyr::glimpse()
getCPUELength("SWC-IBTS", 2013, 1) |> dplyr::glimpse()
getCPUELength("SWC-IBTS", 2014, 1) |> dplyr::glimpse()

E.g.

getCPUELength("SWC-IBTS", 2012, 1) |> dplyr::glimpse()
Rows: 14,038
Columns: 20
$ Survey                   <chr> "SWC-IBTS", "SWC-IBTS", "SWC-IBTS", "SWC-IBTS", "SWC-IBTS", "SWC-IBTS", "SW…
$ Year                     <int> 2012, 2012, 2012, 2012, 2012, 2012, 2012, 2012, 2012, 2012, 2012, 2012, 201…
$ Quarter                  <int> 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, …
$ Ship                     <chr> "748S", "748S", "748S", "748S", "748S", "748S", "748S", "748S", "748S", "74…
$ Gear                     <chr> "GOV", "GOV", "GOV", "GOV", "GOV", "GOV", "GOV", "GOV", "GOV", "GOV", "GOV"…
$ HaulNo                   <int> 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, …
$ `HaulDur xsi:nil="true"` <chr> "NA", "NA", "NA", "NA", "NA", "NA", "NA", "NA", "NA", "NA", "NA", "NA", "NA…
$ ShootLat                 <dbl> 59.9465, 59.9465, 59.9465, 59.9465, 59.9465, 59.9465, 59.9465, 59.9465, 59.…
$ ShootLon                 <dbl> -4.0988, -4.0988, -4.0988, -4.0988, -4.0988, -4.0988, -4.0988, -4.0988, -4.…
$ DateTime                 <chr> "20-02-2012 15:40:00", "20-02-2012 15:40:00", "20-02-2012 15:40:00", "20-02…
$ Depth                    <int> 130, 130, 130, 130, 130, 130, 130, 130, 130, 130, 130, 130, 130, 130, 130, …
$ Area                     <int> 41, 41, 41, 41, 41, 41, 41, 41, 41, 41, 41, 41, 41, 41, 41, 41, 41, 41, 41,…
$ SubArea                  <chr> "48E5", "48E5", "48E5", "48E5", "48E5", "48E5", "48E5", "48E5", "48E5", "48…
$ DayNight                 <chr> "D", "D", "D", "D", "D", "D", "D", "D", "D", "D", "D", "D", "D", "D", "D", …
$ AphiaID                  <int> 11725, 11760, 105812, 105814, 105814, 105814, 105814, 105814, 105814, 10581…
$ Species                  <chr> "Sepiolidae", "Ommastrephidae", "Galeus melastomus", "Scyliorhinus canicula…
$ Sex                      <chr> "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", …
$ LngtClas                 <int> 0, 0, 0, 430, 470, 480, 500, 510, 520, 530, 540, 550, 560, 570, 580, 590, 6…
$ CPUE_number_per_hour     <int> 0, 0, 0, 2, 4, 4, 6, 16, 8, 2, 8, 14, 14, 6, 14, 10, 6, 20, 20, 18, 14, 6, …
$ Cal_DateID               <int> 20130411, 20130411, 20130411, 20130411, 20130411, 20130411, 20130411, 20130…

This may be an API issue rather than a package issue.

 devtools::session_info()
─ Session info ─────────────────────────────────────────────────────────────────────────────────────────────
 setting  value
 version  R version 4.4.1 (2024-06-14)
 os       Debian GNU/Linux 11 (bullseye)
 system   x86_64, linux-gnu
 ui       RStudio
 language (EN)
 collate  is_IS.UTF-8
 ctype    is_IS.UTF-8
 tz       Atlantic/Reykjavik
 date     2026-01-29
 rstudio  2024.09.0+375 Cranberry Hibiscus (server)
 pandoc   3.2 @ /usr/lib/rstudio-server/bin/quarto/bin/tools/x86_64/ (via rmarkdown)
 quarto   1.5.57 @ /usr/local/bin/quarto

─ Packages ─────────────────────────────────────────────────────────────────────────────────────────────────
 package     * version date (UTC) lib source
 ....
 dplyr         1.1.4   2023-11-17 [1] CRAN (R 4.4.1)
 ....
 icesDatras  * 1.4.1   2023-05-08 [1] CRAN (R 4.4.1)

 [1] /heima/einarhj/R/x86_64-pc-linux-gnu-library/4.4
 [2] /usr/local/lib/R/site-library
 [3] /usr/lib/R/site-library
 [4] /usr/lib/R/library
 * ── Packages attached to the search path.

[einarhjorleifsson]

feels like there is a contagion:

> getCPUEAge(survey = "NS-IBTS", year = 2018, quarter = 1) |> dplyr::glimpse()
Rows: 3,263
Columns: 33
$ Survey                  <chr> "NS-IBTS", "NS-IBTS", "NS-IBTS", "NS-IBTS", "NS-IBTS", "NS-IBTS", "NS…
$ Year                    <int> 2018, 2018, 2018, 2018, 2018, 2018, 2018, 2018, 2018, 2018, 2018, 201…
$ Quarter                 <int> 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, …
$ Ship                    <chr> "06NI", "06NI", "06NI", "06NI", "06NI", "06NI", "06NI", "06NI", "06NI…
$ Gear                    <chr> "GOV", "GOV", "GOV", "GOV", "GOV", "GOV", "GOV", "GOV", "GOV", "GOV",…
$ HaulNo                  <int> 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 3, 3, 3, 3, 3, …
$ ShootLat                <dbl> 54.9293, 54.9293, 54.9293, 54.9293, 54.9293, 54.9293, 54.9293, 54.929…
$ ShootLon                <dbl> 8.0610, 8.0610, 8.0610, 8.0610, 8.0610, 8.0610, 8.0610, 8.0610, 8.061…
$ DateTime                <chr> "25-01-2018 14:21:00", "25-01-2018 14:21:00", "25-01-2018 14:21:00", …
$ Depth                   <int> 16, 16, 16, 16, 16, 16, 16, 16, 16, 28, 28, 28, 28, 28, 28, 28, 28, 2…
$ Area                    <int> 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, …
$ SubArea                 <chr> "38F8", "38F8", "38F8", "38F8", "38F8", "38F8", "38F8", "38F8", "38F8…
$ DayNight                <chr> "D", "D", "D", "D", "D", "D", "D", "D", "D", "D", "D", "D", "D", "D",…
$ AphiaID                 <int> 126417, 126425, 126436, 126437, 126438, 126441, 126444, 127023, 12714…
$ Species                 <chr> "Clupea harengus", "Sprattus sprattus", "Gadus morhua", "Melanogrammu…
$ Sex                     <int> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, N…
$ Age_0                   <int> 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, …
$ Age_1                   <dbl> 1372.855, 5884.098, 0.000, 0.000, 7.304, 0.000, 0.000, 0.000, 18.000,…
$ Age_2                   <dbl> 7.065, 85.589, 2.000, 0.000, 9.714, 0.000, 0.000, 0.000, 1.583, 1272.…
$ Age_3                   <dbl> 0.080, 3.901, 2.500, 0.000, 0.956, 0.000, 0.000, 0.000, 0.417, 48.512…
$ Age_4                   <dbl> 0.000, 0.206, 5.500, 0.000, 0.026, 0.000, 0.000, 0.000, 0.000, 8.985,…
$ Age_5                   <dbl> 0.000, 0.000, 5.500, 0.000, 0.000, 0.000, 0.000, 0.000, 0.000, 2.480,…
$ `Age_6 xsi:nil="true"`  <chr> "NA", "0.206", "0.500", "0.000", "0.000", "0.000", "0.000", "0.000", …
$ `Age_7 xsi:nil="true"`  <chr> "NA", "NA", "NA", "NA", "NA", "0.000", "NA", "NA", "0.000", "NA", "NA…
$ `Age_8 xsi:nil="true"`  <chr> "NA", "NA", "NA", "NA", "NA", "0.000", "NA", "NA", "0.000", "NA", "NA…
$ `Age_9 xsi:nil="true"`  <chr> "NA", "NA", "NA", "NA", "NA", "0.000", "NA", "NA", "0.000", "NA", "NA…
$ `Age_10 xsi:nil="true"` <chr> "NA", "NA", "NA", "NA", "NA", "0.000", "NA", "NA", "0.000", "NA", "NA…
$ `Age_11 xsi:nil="true"` <chr> "NA", "NA", "NA", "NA", "NA", "NA", "NA", "NA", "NA", "NA", "NA", "NA…
$ `Age_12 xsi:nil="true"` <chr> "NA", "NA", "NA", "NA", "NA", "NA", "NA", "NA", "NA", "NA", "NA", "NA…
$ `Age_13 xsi:nil="true"` <chr> "NA", "NA", "NA", "NA", "NA", "NA", "NA", "NA", "NA", "NA", "NA", "NA…
$ `Age_14 xsi:nil="true"` <chr> "NA", "NA", "NA", "NA", "NA", "NA", "NA", "NA", "NA", "NA", "NA", "NA…
$ `Age_15 xsi:nil="true"` <chr> "NA", "NA", "NA", "NA", "NA", "NA", "NA", "NA", "NA", "NA", "NA", "NA…
$ Cal_DateID              <int> 20220712, 20220712, 20220712, 20220712, 20220712, 20220712, 20220712,…