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1. DeepMAST DeepMAST Public

   Evidence-governed agent harness for spatial transcriptomics — pipeline building, CCI interpretation, and drug target prioritization with LangGraph, Deep Agents, and MCP

   Python 2

2. sgcp-rag sgcp-rag Public

   Self-correcting, SNI-guided RAG (SGCP-RAG) with LangGraph, pgvector, and MCP integration

   Python 2

3. ReasonLineage ReasonLineage Public

   Evolutionary reasoning engine with author-recused, context-isolated LLM judging and jev structural checks

   HTML 2

4. Degree-GEAR Degree-GEAR Public

   Degree-preserving Graph Evidence Aggregation and Reweighting (Degree-GEAR) for label-free spatial domain identification with frozen biomedical language models, scanpy, and Leiden

   Python 2

5. marsR marsR Public

   MARS: Model-based Association test Reflecting causal Status — leverages allelic heterogeneity to boost GWAS locus-level association power from summary statistics (Genome Biol 2021)

   C++ 9 1

6. voiceinput voiceinput Public

   On-device macOS menu bar app for speech-to-text using WhisperKit — no cloud, no API keys, all local.

   Swift 2