Nanopub Ecosystem Paper

LNCS-style paper for ISWC 2026 on the second-generation Nanopub ecosystem and the IDEBT trust algorithm. The manuscript is written in dokieli — a single self-contained HTML file that doubles as the rendered article.

Top-level layout

• index.html — the paper itself. Open in a browser to read; edit in dokieli to author.
• README.md — this file.
• .gitignore — local ignore rules.

Folders

• media/ — assets used to render index.html: LNCS-style CSS, fonts, and images (figures embedded in the paper).
• scripts/ — dokieli.js, the bundled dokieli editor loaded by index.html.
• slides/ — companion dokieli slide deck (index.html + img/) summarising the paper for talks.
• analysis/ — reproducibility code and data behind §5.1 (live network snapshot) and §5.3 (network simulation):
  • fetch_snapshot.py — pulls a snapshot from the live Nanopub Registry.
  • analyze.py — computes the descriptive statistics and snapshot figure.
  • compare_trustrank.py — compares IDEBT scores against personalized PageRank.
  • simulate_plots.py — generates the simulation-study figure from the XLSX checkpoints.
  • data/ — fetched snapshot (JSON + trust-path dump) consumed by the scripts above.
  • figures/ — generated figures (SVG/PDF/PNG) embedded in the paper.
  • network_simulation_results/ — raw simulation outputs (Stats checkpoints.xlsx, plots.ipynb) and the §4.2 Evaluation working doc.