Repository navigation

Merging-template-4.0.2 - #248

Merged

JoseEspinosa merged 51 commits into

nf-core:devfrom

JoseEspinosa:merging-template-4.0.2

May 29, 2026

Merged

Merging-template-4.0.2#248
JoseEspinosa merged 51 commits into
nf-core:devfrom
JoseEspinosa:merging-template-4.0.2

Commits on Jun 3, 2025
- Template update for nf-core/tools version 3.3.1
  nf-core-bot
  committed
  29122cb
Commits on Jul 8, 2025
- Template update for nf-core/tools version 3.3.2
  nf-core-bot
  committed
  6593947
Commits on Oct 16, 2025
- Template update for nf-core/tools version 3.4.1
  nf-core-bot
  committed
  eeae652
Commits on Nov 20, 2025
- Template update for nf-core/tools version 3.5.1
  nf-core-bot
  committed
  bf2a906
Commits on Apr 30, 2026
- Template update for nf-core/tools version 4.0.2
  nf-core-bot
  committed
  0aaf1a8
Commits on May 20, 2026
- Merge branch 'TEMPLATE' of https://github.com/nf-core/multiplesequencealign into merging-template-4.0.2
  JoseEspinosa
  committed
  b4b4978
- Bring back ci until nf-test are implemented
  JoseEspinosa
  committed
  e7df212
- FIx tyop
  JoseEspinosa
  committed
  e48b17e
- Move classes to lib directory and other fixes in utils_nfcore_multiplesequencealign_pipeline
  JoseEspinosa
  committed
  9bdbb92
- Fix error in multiplesequencealign
  JoseEspinosa
  committed
  b528b3f
- Make lint happy
  JoseEspinosa
  committed
  7b40a22
- Make nf-core lint happy
  JoseEspinosa
  committed
  790022a
- Update nextflow version for ci
  JoseEspinosa
  committed
  588db7d
- Update fastqc
  JoseEspinosa
  committed
  56c457d
- Convert classes in utlls to functions, aligned with current nf-core guidelines
  JoseEspinosa
  committed
  4eb9461
- Update nf-test default test to make nf-core lint happy
  JoseEspinosa
  committed
  1ff6d4d
- Add files to files_unchaged
  JoseEspinosa
  committed
  aeebd41
- Replace conditional publishDir blocks with enabled
  JoseEspinosa
  committed
  19c28eb
- Update mafft align module to make lint happy
  JoseEspinosa
  committed
  f52de2a
- Get rid of versions for mafft after update
  JoseEspinosa
  committed
  f30828f
- Increase disk size for nf-test
  JoseEspinosa
  committed
  d239c61
- Increase more nf-test runners for ci
  JoseEspinosa
  committed
  9144d0d
- Mas madera!
  JoseEspinosa
  committed
  237cdc4
- Update learnmsa module
  JoseEspinosa
  committed
  c621b7a
- Reduce disk back since the problem was not the disk size
  JoseEspinosa
  committed
  91ec2cf
- Increase volume for nf-test again
  JoseEspinosa
  committed
  72be577
- Más madera!
  JoseEspinosa
  committed
  490f9ec
Commits on May 21, 2026
- Update toolsheet input, LEARNMSA removed parameter
  JoseEspinosa
  committed
  6e79051
Commits on May 22, 2026
- Add nf-test default test snapshot
  JoseEspinosa
  committed
  e05e0fb
- Get rid of variable files in nf-test snapshots
  JoseEspinosa
  committed
  b76e192
- Use trace_report_suffix parameter to name coo2print files
  JoseEspinosa
  committed
  47c74e2
- Increase resources for LEARNMSA on nf-test
  JoseEspinosa
  committed
  14c3163
- Update to the newest toolsheet v1.2 for nf-test
  JoseEspinosa
  committed
  be330f8
- Update snapshots
  JoseEspinosa
  committed
  18e71db
- Change ci runners for nf-test to increase available memory
  JoseEspinosa
  committed
  0e4bf7f
- Merge branch 'merging-template-4.0.2' of https://github.com/JoseEspinosa/nf-core-multiplesequencealign into merging-template-4.0.2
  JoseEspinosa
  committed
  52e284e
Commits on May 26, 2026
- Increase memory for nf-test
  JoseEspinosa
  committed
  63ab498
- Try freeing memory first
  JoseEspinosa
  committed
  908ed76
- Use the same input and output than on ci.yml
  JoseEspinosa
  committed
  b670e79
- Remove unused volume
  JoseEspinosa
  committed
  fb43923
- Revert last change
  JoseEspinosa
  committed
  1f0bb30
- Update runners now that toolsheet is correctly passed to test config
  JoseEspinosa
  committed
  0a17704
Commits on May 27, 2026
- Increase memory for nf-test
  JoseEspinosa
  committed
  4613ef6
- Fix c/p tyop
  JoseEspinosa
  committed
  1281348
- Update the correct runner
  JoseEspinosa
  committed
  5ddecea
- Fix config
  JoseEspinosa
  committed
  871118b
- c/p process config from test configuration
  JoseEspinosa
  committed
  01a62a6
- update snapshots
  JoseEspinosa
  committed
  0ca64df
- Update .nftignore and snapshots
  JoseEspinosa
  committed
  64c7768
- Make lint happy
  JoseEspinosa
  committed
  72df2ad
Commits on May 28, 2026
- Update test
  JoseEspinosa
  committed
  595559f

Commits

Commits on Jun 3, 2025

Commits on Jul 8, 2025

Commits on Oct 16, 2025

Commits on Nov 20, 2025

Commits on Apr 30, 2026

Commits on May 20, 2026

Commits on May 21, 2026

Commits on May 22, 2026

Commits on May 26, 2026

Commits on May 27, 2026

Commits on May 28, 2026