Skip to content

Add cellpin to scverse ecosystem #375

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
philinscience wants to merge 2 commits into
base: main
Choose a base branch
from
Open

Add cellpin to scverse ecosystem #375

Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
be8dd5c
Add cellpin
philinscience Jun 17, 2026
9f1a10f
fix tutorial link
philinscience Jun 17, 2026
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
21 changes: 21 additions & 0 deletions packages/cellpin/meta.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,21 @@
name: cellpin
description: cellpin is a lightweight probabilistic model that reconstructs and denoises spatial transcriptomes from single-cell RNA-seq references. It enables transcriptome-wide imputation, robust atlas-to-spatial label-transfer, and improved biological interpretation of both targeted-panel and full-transcriptome spatial datasets.
project_home: https://github.com/Saur-Lab/cellpin
documentation_home: https://cellpin.readthedocs.io/
tutorials_home: https://cellpin.readthedocs.io/
install:
pypi: cellpin
license: MIT
tags:
- spatial-transcriptomics
- single-cell
- transcriptome-imputation
- label-transfer
publications:
- 10.64898/2026.06.02.729566
version: 0.1.1
contact:
- philinscience
- MDLDan
test_command: uv sync --group test && uv run pytest
category: ecosystem
Loading