A Snakemake workflow and MrBiomics module for performing and visualizing differential analyses of NGS data powered by the R package limma.

A Snakemake workflow and MrBiomics module for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R package Seurat.

Template R code for bioinformatics analysis pipeline of transcriptomic Illumina datasets

Automatic descriptor selection and volcano curve generation

A shiny app for custom analyzes of preprocessed omics data

Data for volcano3D package

Transparent statistical pipeline for identifying biomarkers associated with neurological disease progression. Spearman correlations, Mann-Whitney group comparisons, volcano plots, and FDR correction.

a polar representation of multiple volcano plots

Biplots, Volcano plots, PCA plots, Heatmaps and more Computational Genomics data created and visualized during University of Pittsburgh course, Computational Biology (BIOSC1540), with Dr. Miler Lee

Analyse d'expression différentielle de gènes avec le logiciel R

Reusable R/Bash scripts for RNA-Seq (DESeq2), VCF filtering, and multi-omics visualization (heatmaps, volcano plots)

Useful R functions for Multi-omics analyses

This project visualizes Treatment-Emergent Adverse Events(TEAE) in a single graph.

A multi-omics analysis framework for cancer survival prediction (KIRC/LUSC). Utilizes LASSO feature selection, Cox Regression, and Volcano plots to identify genomic biomarkers and predict patient outcomes from TCGA data.

Bioinformatics and statistical analysis of peer-reviewed papers in Dr. Martha Bhattacharya's lab at the University of Arizona. Overlaps with Itch, Endo, and Hippo repos

A Shiny interface to analyse Olink data

R package that visualizes MaxQuant output of activity-based protein profiling experiments.

Analysis and Visualization for the Global Terrorism Dataset including ANOVA tests volcano plots and Topological Data Analysis applications https://www.start.umd.edu & https://www.kaggle.com/START-UMD/gtd#globalterrorismdb_0718dist.csv

interactive volcano plots in shiny application (R)

RNA sequencing, bioinformatics, and data analysis involved in the Itch project for Dr. Martha Bhattacharya's Lab at the University of Arizona