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1. tskit tskit Public

   Population-scale Ancestral Recombination Graph (ARG) library

   Python 180 83

2. msprime msprime Public

   Simulate ARGs and genomic sequence data using population genetic models

   Python 210 92

3. tsinfer tsinfer Public

   Infer a tree sequence from genetic variation data.

   Python 63 17

4. tsdate tsdate Public

   Infer the age of ancestral nodes in a tree sequence.

   Python 25 12

5. tutorials tutorials Public

   A set of tutorials for msprime and tskit.

   Jupyter Notebook 21 19

6. tszip tszip Public

   Gzip-like compression for tskit tree sequences

   Python 5 7