Refactor for fastapi

[MaribelleHGomez]

Link to JIRA ticket if there is one: https://ctds-planx.atlassian.net/browse/PD-152

New Features

Breaking Changes

Bug Fixes

Improvements

Dependency updates

Deployment changes

[github-actions]

The style in this PR agrees with black. ✔️

This formatting comment was generated automatically by a script in uc-cdis/wool.

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Integration Tests

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Integration Tests

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Integration Tests

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Failure Analysis

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Integration Tests

Test summary after running integration tests

filepath	passed	failed	error	skipped	SUBTOTAL
tests/test_drs_endpoint.py	0	0	4	19	23
tests/test_data_upload.py	7	1	0	1	9
tests/test_dbgap.py	0	0	4	1	5
tests/test_ras_passport.py	0	0	0	3	3
tests/test_centralized_auth.py	0	0	16	0	16
tests/test_presigned_url.py	0	0	8	0	8
tests/test_graph_submit_and_query.py	6	1	0	0	7
tests/test_audit_service.py	0	1	0	0	1
tests/test_gen3client.py	0	1	0	0	1
TOTAL	13	4	32	24	73

Test summary after rerunning failed integration tests

filepath	passed	failed	error	SUBTOTAL
tests/test_presigned_url.py	0	0	8	8
tests/test_centralized_auth.py	0	0	16	16
tests/test_drs_endpoint.py	0	0	4	4
tests/test_dbgap.py	0	0	4	4
tests/test_gen3client.py	0	0	1	1
tests/test_graph_submit_and_query.py	1	0	0	1
tests/test_audit_service.py	0	1	0	1
tests/test_data_upload.py	0	1	0	1
TOTAL	1	2	33	36

Please find the detailed integration test report here

Please find the detailed integration test report after rerunning failed tests here

Please find the Github Action logs here

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Failure Analysis

Please find the detailed test analysis report here

[github-actions]

Integration Tests

Test summary after running integration tests

filepath	passed	failed	error	skipped	SUBTOTAL
tests/test_centralized_auth.py	0	0	16	0	16
tests/test_drs_endpoint.py	0	0	23	0	23
tests/test_presigned_url.py	0	0	8	0	8
tests/test_dbgap.py	0	0	4	1	5
tests/test_graph_submit_and_query.py	6	1	0	0	7
tests/test_data_upload.py	6	2	0	1	9
tests/test_audit_service.py	0	1	0	0	1
tests/test_gen3client.py	0	1	0	0	1
tests/test_ras_passport.py	0	0	0	3	3
TOTAL	12	5	51	5	73

Test summary after rerunning failed integration tests

filepath	passed	failed	error	SUBTOTAL
tests/test_centralized_auth.py	0	0	16	16
tests/test_drs_endpoint.py	0	0	23	23
tests/test_presigned_url.py	0	0	8	8
tests/test_dbgap.py	0	0	4	4
tests/test_gen3client.py	0	0	1	1
tests/test_graph_submit_and_query.py	1	0	0	1
tests/test_data_upload.py	0	2	0	2
tests/test_audit_service.py	0	1	0	1
TOTAL	1	3	52	56

Please find the detailed integration test report here

Please find the detailed integration test report after rerunning failed tests here

Please find the Github Action logs here

[github-actions]

Failure Analysis

Please find the detailed test analysis report here

[github-actions]

Integration Tests

Test summary after running integration tests

filepath	passed	failed	error	skipped	SUBTOTAL
tests/test_centralized_auth.py	0	0	16	0	16
tests/test_drs_endpoint.py	0	0	23	0	23
tests/test_presigned_url.py	0	0	8	0	8
tests/test_dbgap.py	0	0	4	1	5
tests/test_graph_submit_and_query.py	6	1	0	0	7
tests/test_data_upload.py	6	2	0	1	9
tests/test_audit_service.py	0	1	0	0	1
tests/test_gen3client.py	0	1	0	0	1
tests/test_ras_passport.py	0	0	0	3	3
TOTAL	12	5	51	5	73

Test summary after rerunning failed integration tests

filepath	passed	failed	error	SUBTOTAL
tests/test_centralized_auth.py	0	0	16	16
tests/test_drs_endpoint.py	0	0	23	23
tests/test_presigned_url.py	0	0	8	8
tests/test_dbgap.py	0	0	4	4
tests/test_gen3client.py	0	0	1	1
tests/test_graph_submit_and_query.py	1	0	0	1
tests/test_data_upload.py	0	2	0	2
tests/test_audit_service.py	0	1	0	1
TOTAL	1	3	52	56

Please find the detailed integration test report here

Please find the detailed integration test report after rerunning failed tests here

Please find the Github Action logs here

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Failure Analysis

Please find the detailed test analysis report here

[github-actions]

Integration Tests

Test summary after running integration tests

filepath	passed	failed	skipped	SUBTOTAL
tests/test_drs_endpoint.py	22	1	0	23
tests/test_centralized_auth.py	13	3	0	16
tests/test_data_upload.py	6	2	1	9
tests/test_presigned_url.py	8	0	0	8
tests/test_graph_submit_and_query.py	6	1	0	7
tests/test_dbgap.py	2	2	1	5
tests/test_gen3client.py	1	0	0	1
tests/test_audit_service.py	0	1	0	1
tests/test_ras_passport.py	0	0	3	3
TOTAL	58	10	5	73

Test summary after rerunning failed integration tests

filepath	passed	failed	SUBTOTAL
tests/test_centralized_auth.py	0	3	3
tests/test_data_upload.py	0	2	2
tests/test_audit_service.py	0	1	1
tests/test_drs_endpoint.py	0	1	1
tests/test_dbgap.py	0	2	2
tests/test_graph_submit_and_query.py	1	0	1
TOTAL	1	9	10

Please find the detailed integration test report here

Please find the detailed integration test report after rerunning failed tests here

Please find the Github Action logs here

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Failure Analysis

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[github-actions]

Integration Tests

Test summary after running integration tests

filepath	passed	failed	skipped	SUBTOTAL
tests/test_drs_endpoint.py	9	1	0	10
tests/test_centralized_auth.py	13	3	0	16
tests/test_data_upload.py	5	3	1	9
tests/test_dbgap.py	2	2	1	5
tests/test_audit_service.py	0	1	0	1
TOTAL	29	10	2	41

Test summary after rerunning failed integration tests

filepath	passed	failed	SUBTOTAL
tests/test_centralized_auth.py	0	3	3
tests/test_dbgap.py	0	2	2
tests/test_data_upload.py	1	2	3
tests/test_audit_service.py	0	1	1
tests/test_drs_endpoint.py	0	1	1
TOTAL	1	9	10

Please find the detailed integration test report here

Please find the detailed integration test report after rerunning failed tests here

Please find the Github Action logs here

[github-actions]

Failure Analysis

Please find the detailed test analysis report here

[github-actions]

Integration Tests

Test summary after running integration tests

filepath	passed	failed	skipped	SUBTOTAL
tests/test_drs_endpoint.py	22	1	0	23
tests/test_centralized_auth.py	16	0	0	16
tests/test_data_upload.py	6	2	1	9
tests/test_presigned_url.py	8	0	0	8
tests/test_graph_submit_and_query.py	6	1	0	7
tests/test_dbgap.py	4	0	1	5
tests/test_gen3client.py	1	0	0	1
tests/test_audit_service.py	0	1	0	1
tests/test_ras_passport.py	0	0	3	3
TOTAL	63	5	5	73

Test summary after rerunning failed integration tests

filepath	passed	failed	SUBTOTAL
tests/test_data_upload.py	1	1	2
tests/test_audit_service.py	0	1	1
tests/test_drs_endpoint.py	0	1	1
tests/test_graph_submit_and_query.py	1	0	1
TOTAL	2	3	5

Please find the detailed integration test report here

Please find the detailed integration test report after rerunning failed tests here

Please find the Github Action logs here

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Failure Analysis

Please find the detailed test analysis report here